Wall clock time and date at job start Tue Mar 31 2020 13:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47179 * 2 1 4 4 C 1.52999 * 109.47198 * 59.99955 * 3 2 1 5 5 C 1.53005 * 109.47045 * 299.99964 * 3 2 1 6 6 C 1.52998 * 109.47179 * 179.97438 * 3 2 1 7 7 H 1.08999 * 109.55835 * 59.79058 * 6 3 2 8 8 C 1.53141 * 109.55740 * 179.97438 * 6 3 2 9 9 C 1.52981 * 109.44880 * 190.62125 * 8 6 3 10 10 C 1.52339 * 108.75698 * 308.46761 * 9 8 6 11 11 N 1.32175 * 123.46181 * 197.70900 * 10 9 8 12 12 C 1.29891 * 117.97949 * 179.97438 * 11 10 9 13 13 N 1.37924 * 125.45836 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99890 * 0.03018 * 13 12 11 15 15 O 1.21853 * 120.00317 * 359.97438 * 14 13 12 16 16 C 1.41238 * 119.99768 * 179.97438 * 14 13 12 17 17 H 1.08002 * 120.00317 * 0.02562 * 16 14 13 18 18 C 1.40153 * 119.99978 * 179.71998 * 16 14 13 19 19 N 1.30624 * 119.99995 * 0.27847 * 18 16 14 20 20 Si 1.86798 * 120.00307 * 180.27638 * 18 16 14 21 21 H 1.48506 * 109.46985 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47563 * 120.00214 * 20 18 16 23 23 H 1.48506 * 109.47035 * 240.00454 * 20 18 16 24 24 S 1.76061 * 109.08162 * 0.26606 * 12 11 10 25 25 C 1.35315 * 122.37063 * 17.67971 * 10 9 8 26 26 C 1.51073 * 125.20125 * 0.06238 * 25 10 9 27 27 H 1.08996 * 109.47218 * 60.00197 * 1 2 3 28 28 H 1.09010 * 109.46843 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47011 * 299.99778 * 1 2 3 30 30 H 1.09000 * 109.47175 * 239.99697 * 2 1 3 31 31 H 1.09003 * 109.47320 * 120.00476 * 2 1 3 32 32 H 1.08999 * 109.47067 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47277 * 300.00580 * 4 3 2 34 34 H 1.09006 * 109.47053 * 60.00109 * 4 3 2 35 35 H 1.09000 * 109.46916 * 300.00063 * 5 3 2 36 36 H 1.09002 * 109.46617 * 59.99918 * 5 3 2 37 37 H 1.08999 * 109.47067 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47469 * 70.63124 * 8 6 3 39 39 H 1.08994 * 109.48004 * 310.61937 * 8 6 3 40 40 H 1.08992 * 109.58837 * 188.68787 * 9 8 6 41 41 H 1.08993 * 109.58884 * 68.24819 * 9 8 6 42 42 H 0.97000 * 119.99587 * 180.02562 * 13 12 11 43 43 H 0.97005 * 119.99999 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.61673 * 256.26434 * 26 25 10 45 45 H 1.09003 * 109.76005 * 135.82343 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 0.0006 7 1 3.9352 0.9255 -0.8867 8 6 4.0826 2.8855 0.0000 9 6 5.5892 2.8907 -0.2652 10 6 6.2608 1.9277 0.7055 11 7 7.5555 1.9457 0.9713 12 6 8.0159 1.0748 1.8179 13 7 9.3340 0.9555 2.2058 14 6 10.2645 1.7864 1.6957 15 8 9.9413 2.6428 0.8913 16 6 11.6142 1.6645 2.0934 17 1 11.9008 0.9052 2.8060 18 6 12.5828 2.5247 1.5584 19 7 12.2363 3.4427 0.6962 20 14 14.3692 2.3586 2.0785 21 1 14.4983 1.2507 3.0590 22 1 15.2065 2.0662 0.8874 23 1 14.8229 3.6271 2.7033 24 16 6.6891 0.0657 2.3845 25 6 5.5713 0.9740 1.3734 26 6 4.0847 0.7318 1.2571 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8937 3.1912 1.2494 33 1 0.4400 2.1637 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8933 1.6498 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 1.8937 3.1912 -1.2495 38 1 3.8827 3.3426 0.9691 39 1 3.5742 3.4515 -0.7805 40 1 5.9833 3.8957 -0.1144 41 1 5.7811 2.5704 -1.2892 42 1 9.5913 0.2735 2.8459 43 1 12.9067 4.0384 0.3262 44 1 3.5790 1.1312 2.1362 45 1 3.8907 -0.3379 1.1778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345412969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:30 Heat of formation + Delta-G solvation = -37.828587 kcal Electronic energy + Delta-G solvation = -25068.732913 eV Core-core repulsion = 21597.043731 eV Total energy + Delta-G solvation = -3471.689182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30287 -40.24204 -38.95824 -36.12598 -34.90696 -34.38092 -31.87334 -31.24549 -29.46511 -28.30247 -28.10925 -25.88629 -24.66561 -24.21490 -22.91027 -21.38449 -20.37519 -19.48285 -18.70887 -18.35696 -17.42095 -17.29984 -16.33301 -16.08626 -15.80196 -15.65192 -15.35874 -15.19988 -14.82014 -14.64611 -14.43881 -14.34419 -13.83367 -13.38238 -13.28267 -13.21169 -13.03750 -12.87632 -12.82209 -12.75163 -12.74216 -12.43892 -12.27883 -12.02765 -11.98500 -11.76538 -11.44765 -11.17661 -11.11863 -10.98133 -10.88570 -10.83777 -10.48340 -10.02821 -9.64439 -8.65483 -8.41194 -7.07871 -0.04660 0.13546 0.84751 1.38415 1.39391 1.58647 1.99592 2.18764 2.45351 2.61609 3.60695 3.61748 3.66714 3.82286 3.86421 4.16817 4.22613 4.30004 4.37128 4.51308 4.56632 4.59880 4.64561 4.71186 4.77659 4.88172 4.92341 4.97404 5.02125 5.07469 5.17777 5.18564 5.21865 5.24391 5.28446 5.29984 5.35654 5.41374 5.43901 5.52940 5.68788 5.71492 5.74844 5.87842 6.03203 6.67879 6.92806 7.43664 8.34746 8.52828 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.002699 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.898676 B =10370.283921 C =10963.817140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.049 4.049 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.065 4.065 7 H 0.067 0.933 8 C -0.103 4.103 9 C -0.039 4.039 10 C 0.071 3.929 11 N -0.540 5.540 12 C 0.311 3.689 13 N -0.642 5.642 14 C 0.518 3.482 15 O -0.574 6.574 16 C -0.557 4.557 17 H 0.098 0.902 18 C 0.029 3.971 19 N -0.800 5.800 20 Si 1.008 2.992 21 H -0.242 1.242 22 H -0.267 1.267 23 H -0.267 1.267 24 S 0.060 5.940 25 C -0.252 4.252 26 C -0.021 4.021 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.419 0.581 43 H 0.280 0.720 44 H 0.090 0.910 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 -6.941 1.339 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.049 4.049 4 C -0.206 4.206 5 C -0.203 4.203 6 C -0.085 4.085 7 H 0.085 0.915 8 C -0.140 4.140 9 C -0.079 4.079 10 C -0.060 4.060 11 N -0.263 5.263 12 C -0.059 4.059 13 N -0.293 5.293 14 C 0.325 3.675 15 O -0.455 6.455 16 C -0.592 4.592 17 H 0.116 0.884 18 C -0.190 4.190 19 N -0.428 5.428 20 Si 0.826 3.174 21 H -0.164 1.164 22 H -0.192 1.192 23 H -0.192 1.192 24 S 0.312 5.688 25 C -0.374 4.374 26 C -0.061 4.061 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.256 0.744 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.975 -6.688 1.168 22.046 hybrid contribution 1.154 0.358 -0.163 1.219 sum -19.821 -6.330 1.005 20.832 Atomic orbital electron populations 1.21875 0.95189 1.01636 1.02313 1.21619 0.96492 0.95365 1.01925 1.20455 0.92081 0.95923 0.96448 1.22061 1.01477 1.00282 0.96798 1.21998 1.01514 1.00340 0.96441 1.21196 0.95263 0.95187 0.96899 0.91491 1.21689 0.91573 0.97612 1.03161 1.20462 0.95755 0.95889 0.95783 1.21355 0.86312 0.98306 0.99994 1.66147 1.15208 1.25688 1.19233 1.24742 0.91502 0.94326 0.95345 1.43676 1.02224 1.37414 1.46004 1.17634 0.86211 0.81239 0.82401 1.90754 1.81057 1.36756 1.36980 1.20480 0.91150 1.19648 1.27936 0.88439 1.27121 1.06745 0.92494 0.92622 1.70193 1.37323 1.13716 1.21571 0.84827 0.73647 0.79755 0.79194 1.16436 1.19185 1.19177 1.84094 0.99862 1.37033 1.47841 1.26049 1.01672 1.03115 1.06574 1.20322 0.84534 1.01486 0.99723 0.92182 0.92878 0.92106 0.92386 0.91876 0.92600 0.91410 0.92519 0.92899 0.91382 0.92170 0.91401 0.88643 0.91990 0.90692 0.74392 0.90945 0.89149 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.21 71.98 0.66 -1.03 16 2 C -0.12 -1.56 4.67 30.59 0.14 -1.42 16 3 C -0.05 -0.70 0.35 -52.18 -0.02 -0.72 16 4 C -0.15 -2.03 7.45 71.98 0.54 -1.49 16 5 C -0.15 -1.91 7.80 71.98 0.56 -1.35 16 6 C -0.07 -1.30 1.55 -10.66 -0.02 -1.32 16 7 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 8 C -0.10 -2.32 4.37 30.64 0.13 -2.18 16 9 C -0.04 -1.28 6.29 30.37 0.19 -1.09 16 10 C 0.07 2.88 6.75 42.36 0.29 3.16 16 11 N -0.54 -27.66 8.61 -183.23 -1.58 -29.24 16 12 C 0.31 14.54 8.25 179.49 1.48 16.02 16 13 N -0.64 -31.11 5.35 -318.73 -1.71 -32.82 16 14 C 0.52 30.90 7.51 84.98 0.64 31.53 16 15 O -0.57 -39.78 13.51 -4.84 -0.07 -39.84 16 16 C -0.56 -30.94 9.28 23.47 0.22 -30.72 16 17 H 0.10 4.71 7.85 -2.91 -0.02 4.68 16 18 C 0.03 1.56 5.50 85.34 0.47 2.02 16 19 N -0.80 -48.45 11.72 21.85 0.26 -48.19 16 20 Si 1.01 39.52 29.56 68.60 2.03 41.55 16 21 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 24 S 0.06 2.03 23.43 -56.49 -1.32 0.71 16 25 C -0.25 -8.28 6.39 25.13 0.16 -8.11 16 26 C -0.02 -0.47 4.77 30.05 0.14 -0.33 16 27 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 28 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.63 6.43 -2.39 -0.02 0.61 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.86 6.71 -2.39 -0.02 0.85 16 32 H 0.05 0.80 6.69 -2.39 -0.02 0.79 16 33 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 34 H 0.06 0.80 6.21 -2.38 -0.01 0.78 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 37 H 0.06 0.79 6.22 -2.39 -0.01 0.78 16 38 H 0.07 1.54 7.00 -2.39 -0.02 1.52 16 39 H 0.10 1.74 5.94 -2.39 -0.01 1.72 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.42 16.49 8.77 -92.71 -0.81 15.68 16 43 H 0.28 15.22 8.29 -92.70 -0.77 14.45 16 44 H 0.09 1.84 5.95 -2.39 -0.01 1.82 16 45 H 0.08 1.70 7.09 -2.39 -0.02 1.68 16 Total: -1.00 -79.41 354.89 3.42 -76.00 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.21 Total: 28.86 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.59 Total: 2.98 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.03 Total: -110.25 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.07 Total: -39.84 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -79.41 3.42 -76.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345412969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.169 kcal (2) G-P(sol) polarization free energy of solvation -79.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds