Wall clock time and date at job start Tue Mar 31 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52996 * 109.47224 * 300.00294 * 3 2 1 5 5 C 1.53002 * 109.47106 * 60.00162 * 3 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 7 7 H 1.09004 * 109.55628 * 300.00262 * 6 3 2 8 8 C 1.53138 * 109.55914 * 179.79011 * 6 3 2 9 9 C 1.52978 * 109.45553 * 169.49018 * 8 6 3 10 10 C 1.52340 * 108.76150 * 51.51429 * 9 8 6 11 11 N 1.32176 * 123.46515 * 162.32534 * 10 9 8 12 12 C 1.29885 * 117.98320 * 180.02562 * 11 10 9 13 13 N 1.37920 * 125.46052 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00219 * 359.97438 * 13 12 11 15 15 O 1.21857 * 119.99523 * 0.02562 * 14 13 12 16 16 C 1.41235 * 120.00194 * 179.97438 * 14 13 12 17 17 H 1.07998 * 120.00144 * 0.02562 * 16 14 13 18 18 C 1.40157 * 120.00198 * 180.02562 * 16 14 13 19 19 N 1.30621 * 119.99940 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99992 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47049 * 60.00256 * 20 18 16 22 22 H 1.48506 * 109.46905 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47471 * 299.99913 * 20 18 16 24 24 S 1.76071 * 109.08028 * 359.97438 * 12 11 10 25 25 C 1.35315 * 122.36786 * 342.33245 * 10 9 8 26 26 C 1.51125 * 125.23661 * 359.83964 * 25 10 9 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09004 * 109.47552 * 59.99646 * 4 3 2 33 33 H 1.09004 * 109.47298 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46993 * 299.99360 * 4 3 2 35 35 H 1.09002 * 109.47596 * 60.00070 * 5 3 2 36 36 H 1.08996 * 109.47407 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.46986 * 300.00235 * 5 3 2 38 38 H 1.08994 * 109.47983 * 289.48525 * 8 6 3 39 39 H 1.09003 * 109.47484 * 49.49178 * 8 6 3 40 40 H 1.08993 * 109.59230 * 171.30138 * 9 8 6 41 41 H 1.08999 * 109.58689 * 291.59633 * 9 8 6 42 42 H 0.97002 * 119.99526 * 179.97438 * 13 12 11 43 43 H 0.96996 * 120.00378 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.70998 * 224.39099 * 26 25 10 45 45 H 1.08997 * 109.54401 * 103.84867 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 1.5301 2.1637 1.2493 6 6 3.5700 1.4424 0.0006 7 1 3.9345 0.9289 0.8904 8 6 4.0827 2.8854 -0.0046 9 6 5.5896 2.8917 0.2591 10 6 6.2603 1.9248 -0.7083 11 7 7.5548 1.9413 -0.9750 12 6 8.0145 1.0671 -1.8184 13 7 9.3323 0.9458 -2.2067 14 6 10.2634 1.7783 -1.7002 15 8 9.9409 2.6378 -0.8989 16 6 11.6130 1.6537 -2.0974 17 1 11.8989 0.8917 -2.8073 18 6 12.5814 2.5191 -1.5703 19 7 12.2357 3.4405 -0.7113 20 14 14.3665 2.3539 -2.0951 21 1 14.4710 2.5503 -3.5633 22 1 15.1841 3.3794 -1.3985 23 1 14.8637 1.0004 -1.7401 24 16 6.6858 0.0606 -2.3857 25 6 5.5702 0.9685 -1.3718 26 6 4.0835 0.7248 -1.2523 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 0.4400 2.1638 -1.2492 33 1 1.8931 3.1915 -1.2489 34 1 1.8934 1.6499 -2.1392 35 1 1.8934 1.6499 2.1393 36 1 1.8931 3.1914 1.2491 37 1 0.4401 2.1637 1.2493 38 1 3.8818 3.3389 -0.9752 39 1 3.5750 3.4543 0.7743 40 1 5.9835 3.8961 0.1039 41 1 5.7823 2.5780 1.2850 42 1 9.5890 0.2613 -2.8443 43 1 12.9059 4.0391 -0.3462 44 1 3.8922 -0.3448 -1.1657 45 1 3.5774 1.1194 -2.1333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345412970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:35 Heat of formation + Delta-G solvation = -17.125312 kcal Electronic energy + Delta-G solvation = -25068.019916 eV Core-core repulsion = 21597.228495 eV Total energy + Delta-G solvation = -3470.791421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07861 -38.76026 -37.33158 -34.73173 -33.22838 -32.36009 -30.72004 -30.40344 -27.87090 -27.45576 -26.71440 -24.83577 -23.27460 -22.98814 -21.58525 -19.91512 -18.61297 -18.40756 -17.48194 -16.65931 -15.74739 -15.57818 -15.20712 -14.93454 -14.57596 -14.44987 -14.15338 -13.91189 -13.73841 -13.45542 -12.93747 -12.64999 -12.56661 -12.44103 -12.36620 -12.14499 -11.91024 -11.72759 -11.56289 -11.40890 -11.37261 -11.21025 -11.00870 -10.87574 -10.69433 -10.67013 -10.40685 -10.33291 -10.11183 -9.91800 -9.40969 -8.88933 -8.75624 -8.51794 -7.61385 -7.01886 -6.39931 -4.96101 1.52312 1.72267 2.34471 3.05269 3.10548 3.12726 3.63124 3.92288 4.21084 4.42835 4.49834 4.60627 4.66881 4.98757 5.07121 5.11635 5.21065 5.28179 5.32184 5.38655 5.49492 5.54176 5.57904 5.69920 5.73017 5.74229 5.78250 5.80063 5.82225 5.88765 5.93072 5.99098 6.05981 6.08702 6.12676 6.24098 6.26683 6.38454 6.47593 6.54011 6.82468 7.18254 7.38269 7.83421 7.94646 8.65034 8.74210 9.20751 10.34784 10.54835 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.002700 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.765377 B =10369.370514 C =10963.172772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.071 4.071 7 H 0.074 0.926 8 C -0.114 4.114 9 C -0.040 4.040 10 C 0.115 3.885 11 N -0.490 5.490 12 C 0.364 3.636 13 N -0.641 5.641 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.534 4.534 17 H 0.071 0.929 18 C 0.087 3.913 19 N -0.743 5.743 20 Si 0.917 3.083 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.265 1.265 24 S -0.023 6.023 25 C -0.274 4.274 26 C -0.020 4.020 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.402 0.598 43 H 0.275 0.725 44 H 0.067 0.933 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.428 -5.265 -0.154 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.058 4.058 4 C -0.205 4.205 5 C -0.203 4.203 6 C -0.091 4.091 7 H 0.092 0.908 8 C -0.151 4.151 9 C -0.080 4.080 10 C -0.018 4.018 11 N -0.212 5.212 12 C -0.007 4.007 13 N -0.290 5.290 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.570 4.570 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.371 5.371 20 Si 0.741 3.259 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.190 1.190 24 S 0.228 5.772 25 C -0.397 4.397 26 C -0.059 4.059 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.237 0.763 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.120 -4.945 0.048 19.749 hybrid contribution 0.830 -0.091 -0.202 0.859 sum -18.290 -5.037 -0.153 18.971 Atomic orbital electron populations 1.21894 0.96209 1.01215 1.01918 1.21618 0.95595 0.96021 1.02127 1.20532 0.94313 0.95185 0.95720 1.22045 1.00576 1.00600 0.97303 1.21991 1.00720 1.00530 0.97019 1.21219 0.93393 0.96333 0.98123 0.90807 1.21718 0.94665 0.96414 1.02335 1.20361 0.93202 0.97756 0.96668 1.20876 0.87266 0.95898 0.97758 1.66196 1.12474 1.24042 1.18483 1.24638 0.90716 0.91966 0.93407 1.44373 1.01863 1.37142 1.45666 1.17243 0.84799 0.81367 0.82860 1.90810 1.79596 1.34149 1.34673 1.19843 0.91042 1.18414 1.27679 0.91029 1.25761 1.00897 0.93665 0.93381 1.69995 1.35154 1.12063 1.19849 0.86273 0.81159 0.78908 0.79599 1.18983 1.20274 1.18988 1.84510 1.03309 1.40009 1.49388 1.25239 0.99613 1.05382 1.09469 1.20069 0.87819 0.99941 0.98092 0.92521 0.92578 0.93225 0.92065 0.91751 0.92714 0.92320 0.92316 0.92725 0.92199 0.92601 0.91493 0.90893 0.89952 0.90397 0.76272 0.91379 0.91480 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.21 37.16 0.34 -0.76 16 2 C -0.12 -0.96 4.66 -26.74 -0.12 -1.08 16 3 C -0.06 -0.50 0.35 -154.51 -0.05 -0.55 16 4 C -0.15 -1.24 7.45 37.16 0.28 -0.97 16 5 C -0.15 -1.16 7.80 37.16 0.29 -0.87 16 6 C -0.07 -0.78 1.55 -90.42 -0.14 -0.92 16 7 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 8 C -0.11 -1.35 4.37 -26.67 -0.12 -1.46 16 9 C -0.04 -0.64 6.29 -27.08 -0.17 -0.81 16 10 C 0.11 2.25 6.75 -82.67 -0.56 1.70 16 11 N -0.49 -11.93 8.61 -9.27 -0.08 -12.01 16 12 C 0.36 8.25 8.25 -88.19 -0.73 7.52 16 13 N -0.64 -14.93 5.35 -14.75 -0.08 -15.01 16 14 C 0.53 15.07 7.51 -15.12 -0.11 14.96 16 15 O -0.52 -16.76 13.51 5.05 0.07 -16.69 16 16 C -0.53 -14.46 9.28 -37.72 -0.35 -14.81 16 17 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 18 C 0.09 2.32 5.50 -17.35 -0.10 2.22 16 19 N -0.74 -21.55 11.72 55.56 0.65 -20.89 16 20 Si 0.92 19.20 29.56 -169.99 -5.02 14.17 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 S -0.02 -0.40 23.43 -107.50 -2.52 -2.92 16 25 C -0.27 -4.66 6.39 -35.14 -0.22 -4.89 16 26 C -0.02 -0.25 4.77 -27.54 -0.13 -0.38 16 27 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 28 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 32 H 0.05 0.41 6.43 -51.93 -0.33 0.07 16 33 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 34 H 0.06 0.51 6.22 -51.93 -0.32 0.19 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.47 6.22 -51.93 -0.32 0.15 16 37 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 38 H 0.07 0.81 7.00 -51.93 -0.36 0.44 16 39 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.40 7.74 8.77 -40.82 -0.36 7.38 16 43 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 44 H 0.07 0.80 7.09 -51.93 -0.37 0.43 16 45 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -33.84 354.90 -10.00 -43.83 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.47 Total: 5.26 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.90 Total: -1.09 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.49 Total: -47.92 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.07 Total: -16.69 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.52 Total: -2.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.84 -10.00 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345412970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.709 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds