Wall clock time and date at job start Tue Mar 31 2020 13:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52996 * 109.47224 * 300.00294 * 3 2 1 5 5 C 1.53002 * 109.47106 * 60.00162 * 3 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 7 7 H 1.09004 * 109.55628 * 300.00262 * 6 3 2 8 8 C 1.53138 * 109.55914 * 179.79011 * 6 3 2 9 9 C 1.52978 * 109.45553 * 169.49018 * 8 6 3 10 10 C 1.52340 * 108.76150 * 51.51429 * 9 8 6 11 11 N 1.32176 * 123.46515 * 162.32534 * 10 9 8 12 12 C 1.29885 * 117.98320 * 180.02562 * 11 10 9 13 13 N 1.37920 * 125.46052 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00219 * 359.97438 * 13 12 11 15 15 O 1.21857 * 119.99523 * 0.02562 * 14 13 12 16 16 C 1.41235 * 120.00194 * 179.97438 * 14 13 12 17 17 H 1.07998 * 120.00144 * 0.02562 * 16 14 13 18 18 C 1.40157 * 120.00198 * 180.02562 * 16 14 13 19 19 N 1.30621 * 119.99940 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99992 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47049 * 60.00256 * 20 18 16 22 22 H 1.48506 * 109.46905 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47471 * 299.99913 * 20 18 16 24 24 S 1.76071 * 109.08028 * 359.97438 * 12 11 10 25 25 C 1.35315 * 122.36786 * 342.33245 * 10 9 8 26 26 C 1.51125 * 125.23661 * 359.83964 * 25 10 9 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09004 * 109.47552 * 59.99646 * 4 3 2 33 33 H 1.09004 * 109.47298 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46993 * 299.99360 * 4 3 2 35 35 H 1.09002 * 109.47596 * 60.00070 * 5 3 2 36 36 H 1.08996 * 109.47407 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.46986 * 300.00235 * 5 3 2 38 38 H 1.08994 * 109.47983 * 289.48525 * 8 6 3 39 39 H 1.09003 * 109.47484 * 49.49178 * 8 6 3 40 40 H 1.08993 * 109.59230 * 171.30138 * 9 8 6 41 41 H 1.08999 * 109.58689 * 291.59633 * 9 8 6 42 42 H 0.97002 * 119.99526 * 179.97438 * 13 12 11 43 43 H 0.96996 * 120.00378 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.70998 * 224.39099 * 26 25 10 45 45 H 1.08997 * 109.54401 * 103.84867 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 1.5301 2.1637 1.2493 6 6 3.5700 1.4424 0.0006 7 1 3.9345 0.9289 0.8904 8 6 4.0827 2.8854 -0.0046 9 6 5.5896 2.8917 0.2591 10 6 6.2603 1.9248 -0.7083 11 7 7.5548 1.9413 -0.9750 12 6 8.0145 1.0671 -1.8184 13 7 9.3323 0.9458 -2.2067 14 6 10.2634 1.7783 -1.7002 15 8 9.9409 2.6378 -0.8989 16 6 11.6130 1.6537 -2.0974 17 1 11.8989 0.8917 -2.8073 18 6 12.5814 2.5191 -1.5703 19 7 12.2357 3.4405 -0.7113 20 14 14.3665 2.3539 -2.0951 21 1 14.4710 2.5503 -3.5633 22 1 15.1841 3.3794 -1.3985 23 1 14.8637 1.0004 -1.7401 24 16 6.6858 0.0606 -2.3857 25 6 5.5702 0.9685 -1.3718 26 6 4.0835 0.7248 -1.2523 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 0.4400 2.1638 -1.2492 33 1 1.8931 3.1915 -1.2489 34 1 1.8934 1.6499 -2.1392 35 1 1.8934 1.6499 2.1393 36 1 1.8931 3.1914 1.2491 37 1 0.4401 2.1637 1.2493 38 1 3.8818 3.3389 -0.9752 39 1 3.5750 3.4543 0.7743 40 1 5.9835 3.8961 0.1039 41 1 5.7823 2.5780 1.2850 42 1 9.5890 0.2613 -2.8443 43 1 12.9059 4.0391 -0.3462 44 1 3.8922 -0.3448 -1.1657 45 1 3.5774 1.1194 -2.1333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345412970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:34 Heat of formation + Delta-G solvation = -37.810734 kcal Electronic energy + Delta-G solvation = -25068.916903 eV Core-core repulsion = 21597.228495 eV Total energy + Delta-G solvation = -3471.688408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30142 -40.24173 -38.95756 -36.12379 -34.90554 -34.37926 -31.87308 -31.24492 -29.46420 -28.30193 -28.10935 -25.88607 -24.66330 -24.21482 -22.91026 -21.38298 -20.37357 -19.48228 -18.70715 -18.35183 -17.41516 -17.29822 -16.33496 -16.08619 -15.81208 -15.65090 -15.36006 -15.20328 -14.81943 -14.63056 -14.43559 -14.34263 -13.83361 -13.38606 -13.28432 -13.21952 -13.02534 -12.87958 -12.80932 -12.74202 -12.70509 -12.43351 -12.28033 -12.07655 -12.02596 -11.76641 -11.44788 -11.16341 -11.10944 -10.97890 -10.88069 -10.82967 -10.48576 -10.02804 -9.64611 -8.65479 -8.40685 -7.07882 -0.04567 0.13557 0.84820 1.39270 1.41880 1.55585 1.99713 2.18994 2.45644 2.61694 3.60762 3.61895 3.66734 3.82332 3.86394 4.16801 4.22565 4.29953 4.37197 4.51312 4.56650 4.59953 4.64563 4.71234 4.77700 4.88207 4.92399 4.97394 5.02086 5.07431 5.17377 5.18611 5.21935 5.24405 5.28444 5.29980 5.35680 5.41393 5.43908 5.52950 5.68795 5.71499 5.74867 5.87606 6.03097 6.67714 6.92922 7.43752 8.34885 8.52902 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.002700 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.765377 B =10369.370514 C =10963.172772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.049 4.049 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.065 4.065 7 H 0.067 0.933 8 C -0.103 4.103 9 C -0.039 4.039 10 C 0.071 3.929 11 N -0.540 5.540 12 C 0.311 3.689 13 N -0.642 5.642 14 C 0.519 3.481 15 O -0.574 6.574 16 C -0.558 4.558 17 H 0.098 0.902 18 C 0.029 3.971 19 N -0.800 5.800 20 Si 1.007 2.993 21 H -0.251 1.251 22 H -0.273 1.273 23 H -0.251 1.251 24 S 0.060 5.940 25 C -0.252 4.252 26 C -0.021 4.021 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.419 0.581 43 H 0.280 0.720 44 H 0.085 0.915 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.207 -6.918 -1.302 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.049 4.049 4 C -0.206 4.206 5 C -0.203 4.203 6 C -0.085 4.085 7 H 0.085 0.915 8 C -0.140 4.140 9 C -0.079 4.079 10 C -0.060 4.060 11 N -0.263 5.263 12 C -0.059 4.059 13 N -0.293 5.293 14 C 0.325 3.675 15 O -0.456 6.456 16 C -0.594 4.594 17 H 0.116 0.884 18 C -0.189 4.189 19 N -0.428 5.428 20 Si 0.826 3.174 21 H -0.174 1.174 22 H -0.198 1.198 23 H -0.175 1.175 24 S 0.311 5.689 25 C -0.374 4.374 26 C -0.061 4.061 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.256 0.744 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.961 -6.653 -1.132 22.020 hybrid contribution 1.151 0.340 0.146 1.209 sum -19.810 -6.313 -0.987 20.815 Atomic orbital electron populations 1.21874 0.95192 1.01636 1.02311 1.21619 0.96490 0.95365 1.01931 1.20455 0.92091 0.95925 0.96443 1.22059 1.01478 1.00278 0.96798 1.21997 1.01515 1.00335 0.96448 1.21196 0.95262 0.95158 0.96932 0.91480 1.21684 0.91565 0.97607 1.03159 1.20458 0.95762 0.95838 0.95838 1.21349 0.86314 0.98261 1.00033 1.66142 1.15240 1.25584 1.19309 1.24739 0.91486 0.94341 0.95337 1.43673 1.02236 1.37189 1.46219 1.17618 0.86185 0.81265 0.82392 1.90755 1.81077 1.36628 1.37110 1.20430 0.91204 1.19387 1.28334 0.88425 1.27119 1.06717 0.92483 0.92625 1.70175 1.37452 1.13496 1.21676 0.84924 0.73437 0.79447 0.79641 1.17442 1.19795 1.17467 1.84097 0.99861 1.37284 1.47626 1.26068 1.01708 1.03071 1.06568 1.20341 0.84525 1.01450 0.99735 0.92108 0.92187 0.92876 0.92381 0.91866 0.91414 0.92600 0.92518 0.92894 0.92179 0.91396 0.91400 0.88647 0.92005 0.90693 0.74395 0.90930 0.89693 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.21 71.98 0.66 -1.03 16 2 C -0.12 -1.56 4.66 30.59 0.14 -1.42 16 3 C -0.05 -0.71 0.35 -52.19 -0.02 -0.72 16 4 C -0.15 -2.03 7.45 71.98 0.54 -1.49 16 5 C -0.15 -1.91 7.80 71.98 0.56 -1.35 16 6 C -0.07 -1.30 1.55 -10.66 -0.02 -1.32 16 7 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 8 C -0.10 -2.31 4.37 30.63 0.13 -2.18 16 9 C -0.04 -1.29 6.29 30.37 0.19 -1.10 16 10 C 0.07 2.88 6.75 42.36 0.29 3.17 16 11 N -0.54 -27.67 8.61 -183.23 -1.58 -29.25 16 12 C 0.31 14.55 8.25 179.50 1.48 16.04 16 13 N -0.64 -31.13 5.35 -318.73 -1.71 -32.83 16 14 C 0.52 30.92 7.51 84.98 0.64 31.56 16 15 O -0.57 -39.80 13.51 -4.85 -0.07 -39.87 16 16 C -0.56 -31.03 9.28 23.47 0.22 -30.81 16 17 H 0.10 4.69 7.85 -2.91 -0.02 4.67 16 18 C 0.03 1.59 5.50 85.34 0.47 2.05 16 19 N -0.80 -48.49 11.72 21.85 0.26 -48.23 16 20 Si 1.01 39.49 29.56 68.60 2.03 41.51 16 21 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 24 S 0.06 2.02 23.43 -56.49 -1.32 0.69 16 25 C -0.25 -8.28 6.39 25.15 0.16 -8.12 16 26 C -0.02 -0.47 4.77 30.07 0.14 -0.33 16 27 H 0.06 0.63 6.43 -2.39 -0.02 0.61 16 28 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.86 6.71 -2.39 -0.02 0.85 16 32 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 33 H 0.05 0.80 6.68 -2.38 -0.02 0.79 16 34 H 0.06 0.80 6.22 -2.39 -0.01 0.78 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.79 6.22 -2.39 -0.01 0.77 16 37 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 38 H 0.07 1.54 7.00 -2.39 -0.02 1.52 16 39 H 0.10 1.74 5.95 -2.39 -0.01 1.72 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.42 16.49 8.77 -92.71 -0.81 15.68 16 43 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 44 H 0.08 1.70 7.09 -2.39 -0.02 1.69 16 45 H 0.09 1.84 5.95 -2.39 -0.01 1.82 16 Total: -1.00 -79.38 354.90 3.42 -75.97 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.21 Total: 29.05 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.59 Total: 2.96 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -3.03 Total: -110.32 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.07 Total: -39.87 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.32 Total: 0.69 kcal Total: -79.38 3.42 -75.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345412970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.155 kcal (2) G-P(sol) polarization free energy of solvation -79.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds