Wall clock time and date at job start Tue Mar 31 2020 13:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47317 * 239.99926 * 2 1 3 5 5 C 1.50699 * 109.46758 * 59.99751 * 4 2 1 6 6 H 1.08001 * 120.00469 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99849 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99420 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00172 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46892 * 90.00127 * 9 7 5 11 11 H 1.48496 * 109.47482 * 210.00186 * 9 7 5 12 12 H 1.48502 * 109.47294 * 330.00384 * 9 7 5 13 13 C 1.53003 * 109.47162 * 120.00104 * 2 1 3 14 14 N 1.46498 * 109.46683 * 299.99804 * 13 2 1 15 15 C 1.34786 * 119.99908 * 180.02562 * 14 13 2 16 16 O 1.21276 * 119.99591 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00140 * 180.02562 * 15 14 13 18 18 C 1.52993 * 109.46977 * 179.97438 * 17 15 14 19 19 S 1.81399 * 109.47075 * 179.97438 * 18 17 15 20 20 C 1.76200 * 102.99971 * 179.97438 * 19 18 17 21 21 C 1.39208 * 119.70805 * 179.97438 * 20 19 18 22 22 C 1.38274 * 119.08752 * 179.97438 * 21 20 19 23 23 C 1.38909 * 118.51576 * 0.02562 * 22 21 20 24 24 C 1.38031 * 119.33836 * 0.27638 * 23 22 21 25 25 N 1.31960 * 120.86241 * 359.44535 * 24 23 22 26 26 H 1.09001 * 109.47641 * 300.00045 * 1 2 3 27 27 H 1.09005 * 109.47408 * 59.99982 * 1 2 3 28 28 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47292 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46952 * 300.00297 * 3 2 1 31 31 H 1.09001 * 109.47312 * 59.99756 * 3 2 1 32 32 H 1.09003 * 109.47252 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46779 * 300.00174 * 4 2 1 34 34 H 0.97010 * 119.99381 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46667 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.47277 * 59.99616 * 13 2 1 37 37 H 0.97006 * 120.00589 * 0.02562 * 14 13 2 38 38 H 1.09003 * 109.47099 * 60.00030 * 17 15 14 39 39 H 1.09002 * 109.46704 * 300.00299 * 17 15 14 40 40 H 1.09003 * 109.47112 * 60.00123 * 18 17 15 41 41 H 1.09002 * 109.47075 * 300.00163 * 18 17 15 42 42 H 1.07997 * 120.45449 * 0.02633 * 21 20 19 43 43 H 1.08004 * 120.73533 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.32660 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.56637 * 179.72239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8526 9 14 1.2490 0.3993 -5.2572 10 1 2.2274 1.4411 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0592 1.0368 -4.9617 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4453 15 6 1.8776 -0.4908 3.6696 16 8 2.5756 -1.4763 3.7808 17 6 1.3748 0.2194 4.9000 18 6 1.8849 -0.5018 6.1492 19 16 1.2804 0.3534 7.6303 20 6 1.9570 -0.6047 8.9451 21 6 1.7017 -0.2427 10.2649 22 6 2.2387 -1.0040 11.2866 23 6 3.0166 -2.1058 10.9543 24 6 3.2344 -2.4035 9.6242 25 7 2.7050 -1.6625 8.6692 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2492 34 1 2.8617 -1.8823 -4.7337 35 1 3.1300 -0.7208 1.2494 36 1 1.6766 -1.7489 1.2493 37 1 0.9936 0.7579 2.3564 38 1 0.2848 0.2185 4.9001 39 1 1.7374 1.2473 4.8998 40 1 2.9750 -0.5014 6.1493 41 1 1.5220 -1.5296 6.1490 42 1 1.0918 0.6203 10.4875 43 1 2.0572 -0.7475 12.3200 44 1 3.4507 -2.7204 11.7291 45 1 3.8424 -3.2566 9.3617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345912159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:39 Heat of formation + Delta-G solvation = -29.402157 kcal Electronic energy + Delta-G solvation = -23473.218715 eV Core-core repulsion = 20001.894931 eV Total energy + Delta-G solvation = -3471.323785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25670 -39.68129 -37.18413 -33.62430 -33.21153 -32.75539 -32.01916 -31.63804 -27.25508 -26.62388 -26.52609 -24.70456 -24.04123 -23.62207 -22.53382 -20.19536 -18.46956 -18.21640 -17.12468 -16.70239 -16.41064 -16.27985 -15.97551 -15.43990 -15.16759 -14.66337 -14.51340 -14.23263 -14.14941 -13.62283 -13.34022 -13.27576 -13.02996 -12.76091 -12.49105 -12.18903 -12.12716 -12.04793 -11.64611 -11.15789 -11.02365 -10.86166 -10.73871 -10.64897 -10.45430 -10.41729 -10.26450 -10.10605 -9.95552 -9.89084 -9.79695 -9.17511 -8.93420 -8.75085 -8.36622 -7.90024 -6.00623 -4.01991 0.59584 0.85198 1.10477 1.93249 2.76607 3.30448 3.32459 3.37456 3.38894 3.47587 4.15503 4.42710 4.44590 4.49066 4.67931 4.68894 4.76098 4.86430 4.93646 5.26929 5.28593 5.34830 5.48706 5.50872 5.55423 5.61661 5.73395 5.74512 5.80200 6.15500 6.17561 6.20930 6.27409 6.37860 6.54679 6.61662 6.74625 7.04841 7.06238 7.11367 7.39830 7.62980 7.70538 7.75389 7.97956 8.37088 8.41107 9.02770 9.61126 11.10760 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.041902 B = 0.001802 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.062554 B =15533.923188 C =15995.016626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.720 5.720 15 C 0.513 3.487 16 O -0.542 6.542 17 C -0.130 4.130 18 C -0.074 4.074 19 S -0.082 6.082 20 C 0.124 3.876 21 C -0.153 4.153 22 C -0.060 4.060 23 C -0.183 4.183 24 C 0.117 3.883 25 N -0.487 5.487 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 4.280 29.367 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.005 3.995 14 N -0.372 5.372 15 C 0.296 3.704 16 O -0.419 6.419 17 C -0.172 4.172 18 C -0.223 4.223 19 S 0.160 5.840 20 C -0.125 4.125 21 C -0.179 4.179 22 C -0.087 4.087 23 C -0.206 4.206 24 C -0.043 4.043 25 N -0.200 5.200 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.005 4.239 28.350 28.822 hybrid contribution 0.143 -0.186 -0.110 0.259 sum -2.861 4.053 28.241 28.673 Atomic orbital electron populations 1.21763 0.95248 1.01176 1.00256 1.20912 0.95495 0.95872 0.95068 1.21765 1.00548 0.95876 1.00252 1.19092 0.96359 0.95233 0.89479 1.21183 1.31225 1.12066 0.90520 0.92251 1.25024 0.95335 0.95082 0.99113 1.69970 1.36937 1.22987 1.23440 0.86638 0.79163 0.79400 0.83036 1.20781 1.21344 1.19955 1.21643 0.98943 0.96037 0.82867 1.46194 1.53166 1.32015 1.05802 1.20286 0.80766 0.84780 0.84543 1.90726 1.37983 1.26397 1.86818 1.21418 1.03203 1.00955 0.91632 1.23171 1.05400 1.02411 0.91319 1.85379 1.64259 1.37205 0.97114 1.23068 0.97467 0.96001 0.95929 1.21664 1.02733 1.02020 0.91525 1.21512 0.94150 0.93477 0.99582 1.22118 1.01304 0.99144 0.98024 1.22789 0.95442 0.97308 0.88796 1.68124 1.09527 1.04994 1.37310 0.95217 0.91414 0.93364 0.93364 0.91418 0.95219 0.96346 0.96334 0.93039 0.91781 0.91778 0.76572 0.88067 0.88064 0.88126 0.88119 0.84307 0.84333 0.84527 0.82326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.15 0.30 -1.89 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 14 N -0.72 -10.00 4.96 -60.29 -0.30 -10.30 16 15 C 0.51 7.27 7.83 -10.98 -0.09 7.19 16 16 O -0.54 -10.00 15.98 5.56 0.09 -9.91 16 17 C -0.13 -1.30 5.71 -27.89 -0.16 -1.46 16 18 C -0.07 -0.83 4.49 37.15 0.17 -0.67 16 19 S -0.08 -0.80 21.91 -107.50 -2.36 -3.16 16 20 C 0.12 1.31 7.00 -16.92 -0.12 1.19 16 21 C -0.15 -1.23 9.84 -39.21 -0.39 -1.62 16 22 C -0.06 -0.38 10.16 -39.32 -0.40 -0.78 16 23 C -0.18 -1.19 10.11 -39.41 -0.40 -1.59 16 24 C 0.12 1.01 11.17 -17.57 -0.20 0.82 16 25 N -0.49 -5.60 9.43 -12.10 -0.11 -5.71 16 26 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 4.56 6.16 -40.82 -0.25 4.31 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.29 8.10 -51.92 -0.42 0.86 16 41 H 0.10 1.29 8.10 -51.92 -0.42 0.87 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 45 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -32.61 381.76 -9.76 -42.37 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.00 Total: 1.98 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.55 Total: -11.51 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.32 Total: -41.64 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.36 Total: -3.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.61 -9.76 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345912159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.967 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds