Wall clock time and date at job start Tue Mar 31 2020 13:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47317 * 239.99926 * 2 1 3 5 5 C 1.50699 * 109.46758 * 59.99751 * 4 2 1 6 6 H 1.08001 * 120.00469 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99849 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99420 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00172 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46892 * 90.00127 * 9 7 5 11 11 H 1.48496 * 109.47482 * 210.00186 * 9 7 5 12 12 H 1.48502 * 109.47294 * 330.00384 * 9 7 5 13 13 C 1.53003 * 109.47162 * 120.00104 * 2 1 3 14 14 N 1.46498 * 109.46683 * 299.99804 * 13 2 1 15 15 C 1.34786 * 119.99908 * 180.02562 * 14 13 2 16 16 O 1.21276 * 119.99591 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00140 * 180.02562 * 15 14 13 18 18 C 1.52993 * 109.46977 * 179.97438 * 17 15 14 19 19 S 1.81399 * 109.47075 * 179.97438 * 18 17 15 20 20 C 1.76200 * 102.99971 * 179.97438 * 19 18 17 21 21 C 1.39208 * 119.70805 * 179.97438 * 20 19 18 22 22 C 1.38274 * 119.08752 * 179.97438 * 21 20 19 23 23 C 1.38909 * 118.51576 * 0.02562 * 22 21 20 24 24 C 1.38031 * 119.33836 * 0.27638 * 23 22 21 25 25 N 1.31960 * 120.86241 * 359.44535 * 24 23 22 26 26 H 1.09001 * 109.47641 * 300.00045 * 1 2 3 27 27 H 1.09005 * 109.47408 * 59.99982 * 1 2 3 28 28 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47292 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46952 * 300.00297 * 3 2 1 31 31 H 1.09001 * 109.47312 * 59.99756 * 3 2 1 32 32 H 1.09003 * 109.47252 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46779 * 300.00174 * 4 2 1 34 34 H 0.97010 * 119.99381 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46667 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.47277 * 59.99616 * 13 2 1 37 37 H 0.97006 * 120.00589 * 0.02562 * 14 13 2 38 38 H 1.09003 * 109.47099 * 60.00030 * 17 15 14 39 39 H 1.09002 * 109.46704 * 300.00299 * 17 15 14 40 40 H 1.09003 * 109.47112 * 60.00123 * 18 17 15 41 41 H 1.09002 * 109.47075 * 300.00163 * 18 17 15 42 42 H 1.07997 * 120.45449 * 0.02633 * 21 20 19 43 43 H 1.08004 * 120.73533 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.32660 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.56637 * 179.72239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8526 9 14 1.2490 0.3993 -5.2572 10 1 2.2274 1.4411 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0592 1.0368 -4.9617 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4453 15 6 1.8776 -0.4908 3.6696 16 8 2.5756 -1.4763 3.7808 17 6 1.3748 0.2194 4.9000 18 6 1.8849 -0.5018 6.1492 19 16 1.2804 0.3534 7.6303 20 6 1.9570 -0.6047 8.9451 21 6 1.7017 -0.2427 10.2649 22 6 2.2387 -1.0040 11.2866 23 6 3.0166 -2.1058 10.9543 24 6 3.2344 -2.4035 9.6242 25 7 2.7050 -1.6625 8.6692 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2492 34 1 2.8617 -1.8823 -4.7337 35 1 3.1300 -0.7208 1.2494 36 1 1.6766 -1.7489 1.2493 37 1 0.9936 0.7579 2.3564 38 1 0.2848 0.2185 4.9001 39 1 1.7374 1.2473 4.8998 40 1 2.9750 -0.5014 6.1493 41 1 1.5220 -1.5296 6.1490 42 1 1.0918 0.6203 10.4875 43 1 2.0572 -0.7475 12.3200 44 1 3.4507 -2.7204 11.7291 45 1 3.8424 -3.2566 9.3617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345912159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:38 Heat of formation + Delta-G solvation = -49.350277 kcal Electronic energy + Delta-G solvation = -23474.083731 eV Core-core repulsion = 20001.894931 eV Total energy + Delta-G solvation = -3472.188800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93695 -40.85631 -38.70754 -35.24855 -34.21023 -33.77772 -33.37285 -32.22384 -29.16453 -27.98875 -27.94574 -25.86204 -24.76042 -24.56858 -23.94896 -21.39312 -19.86025 -18.94420 -18.37721 -18.26921 -17.32835 -17.00265 -16.93348 -16.81078 -16.40264 -15.91657 -15.76269 -15.19320 -15.17820 -14.75374 -14.64113 -14.42840 -14.16062 -13.94000 -13.91176 -13.72891 -13.31833 -12.87198 -12.71853 -12.71085 -12.60704 -12.46454 -12.32465 -12.22049 -11.97316 -11.54138 -11.52937 -11.19920 -11.03130 -10.90003 -10.77861 -10.74875 -10.54086 -10.51411 -10.06730 -8.60119 -8.13964 -6.21895 -0.00220 0.29120 0.37619 1.14104 1.42815 1.43298 1.53696 1.62885 2.29454 2.45756 2.72381 3.20455 3.53613 3.65047 3.89432 3.91447 3.97605 4.04811 4.09133 4.12659 4.19291 4.23815 4.39653 4.49804 4.65603 4.70064 4.74108 4.74726 4.80973 4.90616 4.98101 5.05875 5.11920 5.13928 5.22205 5.41075 5.47358 5.51263 5.54845 5.57869 5.66638 5.81068 5.90159 6.30250 6.58502 6.77674 6.93518 7.26683 7.45898 8.98500 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.041902 B = 0.001802 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.062554 B =15533.923188 C =15995.016626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.141 3.859 14 N -0.707 5.707 15 C 0.512 3.488 16 O -0.591 6.591 17 C -0.116 4.116 18 C -0.072 4.072 19 S -0.061 6.061 20 C 0.090 3.910 21 C -0.156 4.156 22 C -0.058 4.058 23 C -0.173 4.173 24 C 0.092 3.908 25 N -0.526 5.526 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.073 0.927 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.157 0.843 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 6.889 31.864 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.017 3.983 14 N -0.359 5.359 15 C 0.298 3.702 16 O -0.471 6.471 17 C -0.157 4.157 18 C -0.221 4.221 19 S 0.181 5.819 20 C -0.159 4.159 21 C -0.183 4.183 22 C -0.085 4.085 23 C -0.195 4.195 24 C -0.067 4.067 25 N -0.239 5.239 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.255 0.745 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.175 0.825 43 H 0.192 0.808 44 H 0.186 0.814 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.887 6.890 30.869 32.004 hybrid contribution 0.780 -1.081 -0.728 1.519 sum -4.107 5.810 30.141 30.969 Atomic orbital electron populations 1.21700 0.93441 1.00954 1.01817 1.20716 0.96817 0.96363 0.92670 1.21704 0.99854 0.94533 1.01838 1.18983 0.94210 0.94191 0.92493 1.21606 1.30414 1.12073 0.91037 0.90802 1.25982 0.95716 0.95887 1.02824 1.70134 1.38830 1.24992 1.24056 0.85514 0.79192 0.78063 0.78679 1.20172 1.21653 1.18255 1.21198 0.97695 0.95361 0.84074 1.45948 1.53155 1.32217 1.04629 1.21045 0.79611 0.84105 0.85483 1.90717 1.40171 1.28759 1.87471 1.21411 1.04734 1.01292 0.88297 1.22983 1.03998 1.01850 0.93287 1.85055 1.64223 1.36736 0.95896 1.23337 0.98786 0.96662 0.97081 1.21975 1.02697 1.02708 0.90879 1.21992 0.92920 0.92643 1.00917 1.22494 1.00204 0.99150 0.97682 1.23164 0.96034 0.97762 0.89750 1.68045 1.10758 1.06086 1.39017 0.90802 0.92589 0.94556 0.94562 0.92546 0.90807 0.99722 0.99703 0.93223 0.93783 0.93777 0.74529 0.85145 0.85138 0.90443 0.90438 0.82520 0.80753 0.81380 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.07 -2.43 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.50 7.65 25.60 0.20 -27.30 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 9 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 C 0.14 5.02 4.56 86.38 0.39 5.41 16 14 N -0.71 -18.49 4.96 -463.06 -2.30 -20.78 16 15 C 0.51 14.13 7.83 87.66 0.69 14.82 16 16 O -0.59 -22.55 15.98 -3.02 -0.05 -22.60 16 17 C -0.12 -2.08 5.71 29.85 0.17 -1.91 16 18 C -0.07 -1.62 4.49 71.98 0.32 -1.30 16 19 S -0.06 -1.13 21.91 -56.49 -1.24 -2.37 16 20 C 0.09 1.84 7.00 84.83 0.59 2.44 16 21 C -0.16 -2.23 9.84 22.51 0.22 -2.01 16 22 C -0.06 -0.57 10.16 22.44 0.23 -0.34 16 23 C -0.17 -1.87 10.11 22.38 0.23 -1.65 16 24 C 0.09 1.58 11.17 84.62 0.95 2.52 16 25 N -0.53 -12.35 9.43 -192.21 -1.81 -14.16 16 26 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 27 H 0.06 1.98 6.62 -2.38 -0.02 1.96 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.98 6.62 -2.38 -0.02 1.97 16 31 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 32 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.42 7.92 6.16 -92.70 -0.57 7.35 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 41 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 45 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -76.29 381.76 3.03 -73.26 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.41 Total: 14.60 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.70 Total: -16.46 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -3.82 Total: -92.09 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -1.24 Total: -2.37 kcal Total: -76.29 3.03 -73.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345912159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.911 kcal (2) G-P(sol) polarization free energy of solvation -76.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds