Wall clock time and date at job start Tue Mar 31 2020 13:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76198 * 102.99933 * 2 1 4 4 C 1.38942 * 120.01218 * 179.97438 * 3 2 1 5 5 C 1.38049 * 119.99026 * 180.29590 * 4 3 2 6 6 C 1.38852 * 120.01128 * 359.45103 * 5 4 3 7 7 N 1.40200 * 119.99008 * 180.27422 * 6 5 4 8 8 C 1.34776 * 119.99899 * 213.56205 * 7 6 5 9 9 O 1.21599 * 120.00130 * 5.32227 * 8 7 6 10 10 N 1.34770 * 120.00161 * 185.31422 * 8 7 6 11 11 C 1.46506 * 120.00486 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47159 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47185 * 300.00050 * 12 11 10 14 14 C 1.52999 * 109.47067 * 60.00195 * 12 11 10 15 15 C 1.53002 * 109.46894 * 179.97438 * 12 11 10 16 16 C 1.50697 * 109.46941 * 179.97438 * 15 12 11 17 17 H 1.07996 * 120.00409 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99652 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00401 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99867 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47167 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47045 * 120.00386 * 20 18 16 23 23 H 1.48506 * 109.47126 * 240.00284 * 20 18 16 24 24 C 1.38856 * 120.01719 * 0.55409 * 6 5 4 25 25 C 1.38044 * 120.00999 * 359.72181 * 24 6 5 26 26 H 1.09003 * 109.46783 * 60.00373 * 1 2 3 27 27 H 1.08998 * 109.47209 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47796 * 300.00162 * 1 2 3 29 29 H 1.08003 * 120.00542 * 0.02590 * 4 3 2 30 30 H 1.08006 * 119.99597 * 179.72394 * 5 4 3 31 31 H 0.96998 * 119.99871 * 33.56407 * 7 6 5 32 32 H 0.97007 * 120.00196 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.46668 * 300.00311 * 11 10 8 34 34 H 1.09000 * 109.46560 * 60.00321 * 11 10 8 35 35 H 1.08999 * 109.47215 * 60.00447 * 13 12 11 36 36 H 1.08998 * 109.46929 * 180.02562 * 13 12 11 37 37 H 1.09001 * 109.47389 * 299.99891 * 13 12 11 38 38 H 1.09002 * 109.46987 * 59.99996 * 14 12 11 39 39 H 1.08998 * 109.47066 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47349 * 299.99563 * 14 12 11 41 41 H 1.09002 * 109.47152 * 300.00518 * 15 12 11 42 42 H 1.09006 * 109.46694 * 59.99859 * 15 12 11 43 43 H 0.96998 * 120.00133 * 179.97438 * 19 18 16 44 44 H 1.08001 * 119.98679 * 179.70157 * 24 6 5 45 45 H 1.08005 * 120.00311 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5389 2.1234 0.0005 5 6 3.8490 3.4686 0.0067 6 6 2.8333 4.4154 0.0009 7 7 3.1487 5.7814 0.0013 8 6 2.3494 6.6573 0.6419 9 8 1.4096 6.2541 1.2999 10 7 2.5917 7.9801 0.5534 11 6 1.7232 8.9323 1.2501 12 6 2.2138 10.3573 0.9866 13 6 3.6479 10.5059 1.4987 14 6 2.1773 10.6394 -0.5167 15 6 1.3064 11.3517 1.7138 16 6 1.7900 12.7553 1.4547 17 1 2.6574 12.9215 0.8333 18 6 1.1248 13.8272 2.0111 19 7 0.0688 13.6248 2.7683 20 14 1.7238 15.5671 1.6895 21 1 2.9211 15.5242 0.8122 22 1 0.6493 16.3451 1.0221 23 1 2.0768 16.2153 2.9781 24 6 1.5054 4.0096 0.0004 25 6 1.1944 2.6646 0.0000 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 4.3291 1.3870 0.0005 30 1 4.8817 3.7847 0.0116 31 1 3.9421 6.0961 -0.4594 32 1 3.3412 8.3019 0.0283 33 1 0.7017 8.8267 0.8850 34 1 1.7490 8.7310 2.3211 35 1 4.2940 9.7976 0.9803 36 1 3.9972 11.5213 1.3114 37 1 3.6739 10.3050 2.5697 38 1 1.1556 10.5336 -0.8815 39 1 2.5264 11.6548 -0.7044 40 1 2.8235 9.9311 -1.0351 41 1 0.2849 11.2456 1.3485 42 1 1.3320 11.1508 2.7848 43 1 -0.3989 14.3790 3.1601 44 1 0.7158 4.7464 0.0008 45 1 0.1615 2.3491 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348196675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:21 Heat of formation + Delta-G solvation = -17.476269 kcal Electronic energy + Delta-G solvation = -24099.269464 eV Core-core repulsion = 20628.462825 eV Total energy + Delta-G solvation = -3470.806640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67910 -38.89812 -37.24910 -34.79135 -33.71648 -32.14485 -31.44634 -29.89608 -29.03990 -27.13769 -26.56386 -26.15073 -23.51713 -22.99711 -22.38739 -20.74910 -18.90300 -18.27865 -17.79507 -17.31342 -16.33856 -15.77424 -15.35772 -15.20006 -14.72139 -14.66110 -14.40366 -14.23523 -14.10454 -13.85609 -13.61568 -13.13412 -13.08567 -13.00622 -12.80558 -12.28762 -12.26073 -12.10072 -11.59247 -11.23444 -11.06646 -10.87306 -10.80446 -10.68453 -10.62209 -10.45367 -10.27895 -10.10782 -9.92819 -9.26064 -9.20361 -9.11240 -8.95988 -8.75697 -8.39299 -7.43976 -6.03065 -4.04505 0.95579 1.17625 1.26636 2.12541 2.60295 3.08795 3.27898 3.36183 3.38234 3.60357 4.18298 4.42786 4.59419 4.70987 4.71563 4.72390 5.06536 5.22343 5.31265 5.32483 5.32880 5.42268 5.57640 5.68462 5.73403 5.83003 6.05287 6.07777 6.11478 6.17078 6.22044 6.29711 6.34354 6.49615 6.58140 6.69459 6.79403 6.88966 7.01086 7.02861 7.08262 7.60591 7.72228 7.93854 7.95899 8.36723 8.54828 9.00463 9.58822 11.08344 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.037977 B = 0.001958 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.108473 B =14298.016090 C =14753.240388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.128 6.128 3 C -0.107 4.107 4 C -0.078 4.078 5 C -0.134 4.134 6 C 0.174 3.826 7 N -0.691 5.691 8 C 0.698 3.302 9 O -0.576 6.576 10 N -0.730 5.730 11 C 0.145 3.855 12 C -0.072 4.072 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.036 3.964 16 C -0.511 4.511 17 H 0.060 0.940 18 C 0.055 3.945 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.101 4.101 25 C -0.111 4.111 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.406 0.594 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.142 0.858 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 -23.895 -8.522 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.113 5.887 3 C -0.220 4.220 4 C -0.102 4.102 5 C -0.156 4.156 6 C 0.076 3.924 7 N -0.339 5.339 8 C 0.398 3.602 9 O -0.452 6.452 10 N -0.384 5.384 11 C 0.022 3.978 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.002 4.002 16 C -0.549 4.549 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.123 4.123 25 C -0.135 4.135 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.241 0.759 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.159 0.841 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.199 -25.097 -7.797 27.001 hybrid contribution 0.129 2.525 -0.493 2.576 sum 6.329 -22.572 -8.290 24.865 Atomic orbital electron populations 1.23660 0.94648 1.06988 1.05860 1.85341 1.06638 1.03589 1.93159 1.21576 0.96640 0.96201 1.07619 1.20468 0.94245 0.95197 1.00324 1.20777 0.98497 0.91952 1.04411 1.17542 0.93476 0.82139 0.99238 1.42762 1.29398 1.04916 1.56831 1.16009 0.82660 0.81448 0.80033 1.90944 1.31514 1.77955 1.44821 1.45415 1.34441 1.03797 1.54787 1.21575 0.92829 0.87173 0.96202 1.20926 0.97210 0.92599 0.96560 1.21762 0.95151 1.01450 1.00063 1.21763 1.00515 1.01345 0.94798 1.19096 0.93756 0.92208 0.95099 1.21209 1.12742 0.90803 1.30195 0.92188 1.25025 0.95083 0.99120 0.95348 1.69972 1.19332 1.30922 1.33067 0.86585 0.78680 0.85052 0.77947 1.19809 1.21135 1.21127 1.21136 0.95836 0.95789 0.99575 1.21039 0.98258 0.92468 1.01690 0.89706 0.87509 0.89615 0.85235 0.85166 0.75875 0.76894 0.91745 0.91744 0.95330 0.91379 0.93304 0.93314 0.91384 0.95319 0.96281 0.96277 0.93066 0.84067 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.15 101.05 0.92 0.05 16 2 S -0.13 -1.13 22.56 -107.50 -2.43 -3.55 16 3 C -0.11 -1.11 6.11 -39.06 -0.24 -1.35 16 4 C -0.08 -0.75 9.78 -39.39 -0.39 -1.14 16 5 C -0.13 -1.28 9.95 -39.42 -0.39 -1.67 16 6 C 0.17 2.02 6.29 -83.57 -0.53 1.50 16 7 N -0.69 -7.58 5.36 -14.17 -0.08 -7.65 16 8 C 0.70 10.19 8.30 -86.92 -0.72 9.47 16 9 O -0.58 -10.66 14.03 5.28 0.07 -10.59 16 10 N -0.73 -9.98 4.96 -65.22 -0.32 -10.31 16 11 C 0.15 2.47 4.56 -4.04 -0.02 2.45 16 12 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 13 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 14 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 15 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 16 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 17 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.10 -1.28 8.65 -39.42 -0.34 -1.62 16 25 C -0.11 -1.21 9.36 -39.39 -0.37 -1.58 16 26 H 0.08 0.48 7.75 -51.92 -0.40 0.07 16 27 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 30 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.41 3.03 8.84 -40.82 -0.36 2.67 16 32 H 0.40 4.41 6.18 -40.82 -0.25 4.15 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 36 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 40 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.14 2.03 6.41 -52.49 -0.34 1.69 16 45 H 0.13 1.15 5.87 -52.48 -0.31 0.84 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -31.60 373.82 -10.13 -41.72 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.70 Total: 4.59 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.03 Total: -10.39 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.34 Total: -43.33 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.43 Total: -3.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.60 -10.13 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348196675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.249 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds