Wall clock time and date at job start Tue Mar 31 2020 13:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76198 * 102.99933 * 2 1 4 4 C 1.38942 * 120.01218 * 179.97438 * 3 2 1 5 5 C 1.38049 * 119.99026 * 180.29590 * 4 3 2 6 6 C 1.38852 * 120.01128 * 359.45103 * 5 4 3 7 7 N 1.40200 * 119.99008 * 180.27422 * 6 5 4 8 8 C 1.34776 * 119.99899 * 213.56205 * 7 6 5 9 9 O 1.21599 * 120.00130 * 5.32227 * 8 7 6 10 10 N 1.34770 * 120.00161 * 185.31422 * 8 7 6 11 11 C 1.46506 * 120.00486 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47159 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47185 * 300.00050 * 12 11 10 14 14 C 1.52999 * 109.47067 * 60.00195 * 12 11 10 15 15 C 1.53002 * 109.46894 * 179.97438 * 12 11 10 16 16 C 1.50697 * 109.46941 * 179.97438 * 15 12 11 17 17 H 1.07996 * 120.00409 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99652 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00401 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99867 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47167 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47045 * 120.00386 * 20 18 16 23 23 H 1.48506 * 109.47126 * 240.00284 * 20 18 16 24 24 C 1.38856 * 120.01719 * 0.55409 * 6 5 4 25 25 C 1.38044 * 120.00999 * 359.72181 * 24 6 5 26 26 H 1.09003 * 109.46783 * 60.00373 * 1 2 3 27 27 H 1.08998 * 109.47209 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47796 * 300.00162 * 1 2 3 29 29 H 1.08003 * 120.00542 * 0.02590 * 4 3 2 30 30 H 1.08006 * 119.99597 * 179.72394 * 5 4 3 31 31 H 0.96998 * 119.99871 * 33.56407 * 7 6 5 32 32 H 0.97007 * 120.00196 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.46668 * 300.00311 * 11 10 8 34 34 H 1.09000 * 109.46560 * 60.00321 * 11 10 8 35 35 H 1.08999 * 109.47215 * 60.00447 * 13 12 11 36 36 H 1.08998 * 109.46929 * 180.02562 * 13 12 11 37 37 H 1.09001 * 109.47389 * 299.99891 * 13 12 11 38 38 H 1.09002 * 109.46987 * 59.99996 * 14 12 11 39 39 H 1.08998 * 109.47066 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47349 * 299.99563 * 14 12 11 41 41 H 1.09002 * 109.47152 * 300.00518 * 15 12 11 42 42 H 1.09006 * 109.46694 * 59.99859 * 15 12 11 43 43 H 0.96998 * 120.00133 * 179.97438 * 19 18 16 44 44 H 1.08001 * 119.98679 * 179.70157 * 24 6 5 45 45 H 1.08005 * 120.00311 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5389 2.1234 0.0005 5 6 3.8490 3.4686 0.0067 6 6 2.8333 4.4154 0.0009 7 7 3.1487 5.7814 0.0013 8 6 2.3494 6.6573 0.6419 9 8 1.4096 6.2541 1.2999 10 7 2.5917 7.9801 0.5534 11 6 1.7232 8.9323 1.2501 12 6 2.2138 10.3573 0.9866 13 6 3.6479 10.5059 1.4987 14 6 2.1773 10.6394 -0.5167 15 6 1.3064 11.3517 1.7138 16 6 1.7900 12.7553 1.4547 17 1 2.6574 12.9215 0.8333 18 6 1.1248 13.8272 2.0111 19 7 0.0688 13.6248 2.7683 20 14 1.7238 15.5671 1.6895 21 1 2.9211 15.5242 0.8122 22 1 0.6493 16.3451 1.0221 23 1 2.0768 16.2153 2.9781 24 6 1.5054 4.0096 0.0004 25 6 1.1944 2.6646 0.0000 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 4.3291 1.3870 0.0005 30 1 4.8817 3.7847 0.0116 31 1 3.9421 6.0961 -0.4594 32 1 3.3412 8.3019 0.0283 33 1 0.7017 8.8267 0.8850 34 1 1.7490 8.7310 2.3211 35 1 4.2940 9.7976 0.9803 36 1 3.9972 11.5213 1.3114 37 1 3.6739 10.3050 2.5697 38 1 1.1556 10.5336 -0.8815 39 1 2.5264 11.6548 -0.7044 40 1 2.8235 9.9311 -1.0351 41 1 0.2849 11.2456 1.3485 42 1 1.3320 11.1508 2.7848 43 1 -0.3989 14.3790 3.1601 44 1 0.7158 4.7464 0.0008 45 1 0.1615 2.3491 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348196675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:20 Heat of formation + Delta-G solvation = -36.161352 kcal Electronic energy + Delta-G solvation = -24100.079710 eV Core-core repulsion = 20628.462825 eV Total energy + Delta-G solvation = -3471.616886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74008 -39.90767 -38.65930 -35.82240 -35.28848 -33.93873 -32.21121 -30.78491 -29.64455 -29.02325 -27.95055 -27.51168 -25.07823 -23.97269 -23.49919 -21.87896 -20.19243 -19.35204 -18.77483 -18.40852 -18.23971 -16.86179 -16.62795 -16.25316 -16.13339 -15.68630 -15.50662 -15.31642 -15.10004 -14.73155 -14.68023 -14.49178 -14.33359 -13.98557 -13.93455 -13.72360 -13.62696 -12.98181 -12.90043 -12.69590 -12.60485 -12.37371 -12.33409 -12.22886 -11.94931 -11.72822 -11.53988 -11.51596 -11.14417 -10.97410 -10.84645 -10.51924 -10.23085 -9.99163 -9.77743 -8.18670 -8.13832 -6.21419 0.12383 0.36888 0.61857 1.41966 1.43032 1.46827 1.54188 1.56245 1.98952 2.44353 2.74283 3.17830 3.20831 3.83521 3.94754 3.96581 4.09330 4.22893 4.24804 4.27422 4.31922 4.44184 4.51586 4.68648 4.73428 4.76455 4.84843 4.93736 4.97535 5.03556 5.10727 5.13714 5.26067 5.28845 5.37281 5.43955 5.48107 5.51753 5.54661 5.58043 5.81258 5.90337 5.93014 5.95505 6.31253 6.93567 6.97401 7.44374 7.46409 8.98799 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.037977 B = 0.001958 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.108473 B =14298.016090 C =14753.240388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.138 6.138 3 C -0.114 4.114 4 C -0.082 4.082 5 C -0.122 4.122 6 C 0.153 3.847 7 N -0.671 5.671 8 C 0.698 3.302 9 O -0.619 6.619 10 N -0.715 5.715 11 C 0.161 3.839 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.511 4.511 17 H 0.074 0.926 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.959 3.041 21 H -0.256 1.256 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.426 0.574 32 H 0.413 0.587 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.071 0.929 41 H -0.014 1.014 42 H -0.014 1.014 43 H 0.259 0.741 44 H 0.116 0.884 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -25.072 -10.243 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.103 5.897 3 C -0.227 4.227 4 C -0.106 4.106 5 C -0.144 4.144 6 C 0.056 3.944 7 N -0.321 5.321 8 C 0.398 3.602 9 O -0.499 6.499 10 N -0.372 5.372 11 C 0.036 3.964 12 C -0.064 4.064 13 C -0.179 4.179 14 C -0.179 4.179 15 C 0.001 3.999 16 C -0.549 4.549 17 H 0.092 0.908 18 C -0.204 4.204 19 N -0.580 5.580 20 Si 0.784 3.216 21 H -0.179 1.179 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.145 4.145 25 C -0.143 4.143 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.104 0.896 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.265 0.735 32 H 0.251 0.749 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.005 0.995 42 H 0.004 0.996 43 H 0.068 0.932 44 H 0.134 0.866 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.064 -26.295 -9.570 29.414 hybrid contribution -0.790 2.728 0.044 2.840 sum 8.274 -23.568 -9.526 26.733 Atomic orbital electron populations 1.23763 0.92490 1.08411 1.06183 1.85346 1.09121 1.02340 1.92893 1.21824 0.97007 0.96986 1.06877 1.20838 0.94505 0.95816 0.99447 1.21065 0.99395 0.91385 1.02524 1.17725 0.93647 0.82520 1.00538 1.42447 1.29289 1.04309 1.56015 1.16109 0.82476 0.81735 0.79853 1.90928 1.33551 1.78661 1.46769 1.45009 1.34376 1.03137 1.54633 1.21110 0.92590 0.87297 0.95373 1.20711 0.96987 0.91527 0.97188 1.21699 0.94358 1.01974 0.99883 1.21699 1.00844 1.01844 0.93517 1.18980 0.93478 0.93707 0.93700 1.21628 1.12553 0.91527 1.29230 0.90801 1.25967 0.95332 1.03736 0.95389 1.70127 1.21028 1.32080 1.34743 0.85484 0.78559 0.79650 0.77858 1.17936 1.21174 1.21161 1.21071 0.96047 0.96086 1.01344 1.21145 0.99188 0.92049 1.01918 0.89110 0.85514 0.89599 0.83091 0.82036 0.73545 0.74906 0.93581 0.93639 0.90987 0.92559 0.94457 0.94464 0.92556 0.91042 0.99535 0.99550 0.93219 0.86648 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.15 113.37 1.04 -0.47 16 2 S -0.14 -2.22 22.56 -56.49 -1.27 -3.49 16 3 C -0.11 -2.21 6.11 22.61 0.14 -2.08 16 4 C -0.08 -1.39 9.78 22.39 0.22 -1.17 16 5 C -0.12 -1.99 9.95 22.37 0.22 -1.77 16 6 C 0.15 3.36 6.29 38.10 0.24 3.60 16 7 N -0.67 -13.44 5.36 -316.99 -1.70 -15.14 16 8 C 0.70 19.85 8.30 179.06 1.49 21.34 16 9 O -0.62 -23.55 14.03 -4.03 -0.06 -23.60 16 10 N -0.72 -18.49 4.96 -478.52 -2.37 -20.86 16 11 C 0.16 5.55 4.56 86.38 0.39 5.95 16 12 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 13 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 14 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 15 C 0.04 1.95 4.04 29.85 0.12 2.07 16 16 C -0.51 -26.97 7.65 25.60 0.20 -26.77 16 17 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 18 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 19 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16 20 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 C -0.12 -3.16 8.65 22.37 0.19 -2.97 16 25 C -0.12 -2.58 9.36 22.39 0.21 -2.37 16 26 H 0.09 0.89 7.75 -2.39 -0.02 0.87 16 27 H 0.13 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 29 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.43 4.93 8.84 -92.71 -0.82 4.11 16 32 H 0.41 7.73 6.18 -92.70 -0.57 7.16 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16 36 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.94 6.62 -2.39 -0.02 1.93 16 40 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 43 H 0.26 14.87 8.31 -92.71 -0.77 14.09 16 44 H 0.12 3.53 6.41 -2.91 -0.02 3.51 16 45 H 0.13 2.49 5.87 -2.91 -0.02 2.47 16 Total: -1.00 -72.18 373.82 2.58 -69.61 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.38 Total: 18.31 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 6.05 Total: -13.56 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -3.79 Total: -92.50 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -1.27 Total: -3.49 kcal Total: -72.18 2.58 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348196675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.445 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds