Wall clock time and date at job start Tue Mar 31 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00001 * 2 1 4 4 C 1.46896 * 110.99946 * 123.95203 * 2 1 3 5 5 C 1.53001 * 109.47242 * 296.04632 * 4 2 1 6 6 C 1.53004 * 109.47407 * 176.04768 * 4 2 1 7 7 C 1.53004 * 109.47309 * 56.04871 * 4 2 1 8 8 N 1.46492 * 109.47018 * 59.99910 * 7 4 2 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 4 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09001 * 109.47565 * 296.04486 * 1 2 3 27 27 H 1.09002 * 109.47464 * 56.04709 * 1 2 3 28 28 H 1.09003 * 109.47319 * 176.04788 * 1 2 3 29 29 H 1.08998 * 109.47274 * 183.95205 * 3 2 1 30 30 H 1.08996 * 109.46871 * 303.95387 * 3 2 1 31 31 H 1.09004 * 109.46993 * 63.95071 * 3 2 1 32 32 H 1.09004 * 109.46862 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47519 * 299.99751 * 5 4 2 34 34 H 1.08998 * 109.46951 * 60.00476 * 5 4 2 35 35 H 1.09002 * 109.46676 * 300.00017 * 6 4 2 36 36 H 1.08998 * 109.46830 * 59.99678 * 6 4 2 37 37 H 1.08994 * 109.47261 * 179.97438 * 6 4 2 38 38 H 1.09005 * 109.46655 * 299.99919 * 7 4 2 39 39 H 1.09002 * 109.47164 * 179.97438 * 7 4 2 40 40 H 0.96996 * 120.00373 * 359.97438 * 8 7 4 41 41 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 42 42 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 44 44 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5868 -0.0836 2.4447 6 6 3.5217 -0.8263 1.0493 7 6 1.4260 -2.1857 1.1038 8 7 1.8173 -2.8390 -0.1477 9 6 1.4259 -4.1041 -0.3985 10 8 0.7488 -4.7031 0.4140 11 6 1.8204 -4.7634 -1.6619 12 6 2.5980 -4.0768 -2.5972 13 6 2.9650 -4.6933 -3.7765 14 6 2.5715 -5.9924 -4.0344 15 6 1.7917 -6.6840 -3.1121 16 16 1.2858 -8.3377 -3.4495 17 6 -0.3034 -8.0352 -4.1476 18 1 -0.6328 -7.0215 -4.3215 19 6 -1.1316 -9.0993 -4.4739 20 7 -0.7300 -10.3348 -4.2625 21 14 -2.8163 -8.7785 -5.2147 22 1 -3.0267 -7.3149 -5.3507 23 1 -2.8984 -9.4174 -6.5528 24 1 -3.8631 -9.3485 -4.3290 25 6 1.4172 -6.0718 -1.9232 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 1.9771 -0.6522 3.2888 33 1 1.9925 0.9278 2.4688 34 1 0.4995 -0.0407 2.5076 35 1 3.8127 -1.3125 0.1181 36 1 3.9273 0.1851 1.0734 37 1 3.9123 -1.3943 1.8936 38 1 0.3387 -2.1426 1.1667 39 1 1.8170 -2.7541 1.9476 40 1 2.3573 -2.3609 -0.7962 41 1 2.9123 -3.0630 -2.3976 42 1 3.5660 -4.1598 -4.4980 43 1 2.8658 -6.4711 -4.9568 44 1 -1.3093 -11.0787 -4.4904 45 1 0.8156 -6.6073 -1.2037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350107305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:50 Heat of formation + Delta-G solvation = -5.692785 kcal Electronic energy + Delta-G solvation = -24649.330798 eV Core-core repulsion = 21179.035129 eV Total energy + Delta-G solvation = -3470.295669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31446 -39.16230 -37.62604 -34.54246 -32.47969 -32.37867 -30.80335 -30.44398 -28.85478 -27.41232 -26.01770 -25.53938 -24.38947 -23.14381 -22.09488 -20.26554 -19.28399 -18.17673 -17.36860 -16.70245 -16.07343 -15.77749 -15.20537 -15.13374 -14.83820 -14.80519 -14.71389 -14.26107 -14.09108 -13.66545 -13.40434 -13.24814 -12.93551 -12.85649 -12.76949 -12.36603 -12.24106 -12.15398 -11.83377 -11.65761 -11.60211 -11.51160 -11.11297 -11.09062 -11.05373 -10.95167 -10.66480 -9.92248 -9.70258 -9.14064 -9.05432 -8.95306 -8.68272 -8.51035 -7.97568 -6.67713 -6.25874 -3.99269 1.24097 1.73059 3.11797 3.16340 3.22018 3.27082 3.31738 3.50867 3.57419 4.13859 4.24853 4.31331 4.49241 4.65643 4.80075 4.90057 4.97493 5.10597 5.14431 5.17123 5.18635 5.21458 5.31438 5.32200 5.40306 5.43679 5.47874 5.51102 5.52229 5.53145 5.71854 5.76209 5.80925 5.88733 5.93780 6.06383 6.31843 6.44725 6.65576 6.66089 6.69287 6.70786 6.99171 7.25712 7.60832 7.64543 8.36133 8.40221 9.20162 10.80935 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.002766 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.604927 B =10119.297861 C =10554.346571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.018 3.982 4 C 0.091 3.909 5 C -0.180 4.180 6 C -0.142 4.142 7 C 0.133 3.867 8 N -0.719 5.719 9 C 0.561 3.439 10 O -0.540 6.540 11 C -0.153 4.153 12 C -0.088 4.088 13 C -0.142 4.142 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.037 6.037 17 C -0.517 4.517 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.871 5.871 21 Si 0.921 3.079 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.020 4.020 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.405 0.595 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.269 0.731 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 23.520 8.846 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.257 5.257 3 C -0.130 4.130 4 C 0.001 3.999 5 C -0.239 4.239 6 C -0.199 4.199 7 C 0.008 3.992 8 N -0.373 5.373 9 C 0.350 3.650 10 O -0.418 6.418 11 C -0.158 4.158 12 C -0.107 4.107 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.218 4.218 16 S 0.198 5.802 17 C -0.665 4.665 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.041 4.041 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.242 0.758 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.393 21.616 9.157 24.931 hybrid contribution -1.744 2.102 -0.198 2.738 sum 6.649 23.717 8.960 26.211 Atomic orbital electron populations 1.22513 0.87177 1.03007 1.00584 1.62205 1.08233 1.13783 1.41486 1.22487 1.01063 0.88848 1.00631 1.21364 0.95990 0.93015 0.89491 1.22403 1.02205 1.01389 0.97906 1.21910 0.92951 1.02255 1.02795 1.21377 0.99986 0.90591 0.87234 1.45759 1.55942 1.14189 1.21414 1.18422 0.79212 0.81036 0.86373 1.90766 1.38441 1.64534 1.48049 1.19861 1.04325 0.96240 0.95326 1.21154 0.96985 0.98664 0.93896 1.21051 1.02105 0.95641 0.97329 1.21941 0.94329 0.93272 0.98194 1.22825 1.00005 1.03500 0.95453 1.83589 1.21262 0.95407 1.79956 1.22882 1.01012 0.95776 1.46829 0.90577 1.25004 0.98785 0.94439 0.95396 1.69997 1.37086 0.98155 1.45371 0.86071 0.81972 0.78659 0.78635 1.19490 1.20502 1.20453 1.21937 0.94198 0.92134 0.95868 0.95182 0.91276 0.90681 0.90995 0.91389 0.95219 0.91419 0.91710 0.91975 0.91606 0.92081 0.91697 0.91320 0.91022 0.75804 0.86444 0.85925 0.85157 0.92142 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 8.80 60.06 0.53 0.65 16 2 N -0.53 -4.14 4.52 -235.40 -1.06 -5.20 16 3 C 0.02 0.11 8.82 60.06 0.53 0.64 16 4 C 0.09 0.69 0.37 -131.60 -0.05 0.65 16 5 C -0.18 -1.17 7.78 37.16 0.29 -0.88 16 6 C -0.14 -0.95 8.07 37.16 0.30 -0.65 16 7 C 0.13 1.39 4.09 -4.04 -0.02 1.37 16 8 N -0.72 -8.69 5.08 -61.24 -0.31 -9.00 16 9 C 0.56 9.31 7.77 -12.32 -0.10 9.22 16 10 O -0.54 -10.94 16.34 5.32 0.09 -10.85 16 11 C -0.15 -2.65 5.87 -105.00 -0.62 -3.26 16 12 C -0.09 -1.25 9.54 -39.12 -0.37 -1.62 16 13 C -0.14 -2.08 10.02 -39.67 -0.40 -2.48 16 14 C -0.06 -1.03 9.79 -39.25 -0.38 -1.41 16 15 C -0.11 -2.33 5.45 -39.00 -0.21 -2.55 16 16 S -0.04 -0.96 21.40 -107.50 -2.30 -3.26 16 17 C -0.52 -14.79 9.46 30.92 0.29 -14.50 16 18 H 0.08 2.17 7.79 -52.49 -0.41 1.76 16 19 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 21 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.02 -0.41 9.34 -38.92 -0.36 -0.77 16 26 H 0.03 0.22 6.40 -51.93 -0.33 -0.11 16 27 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 28 H 0.07 0.74 6.24 -51.93 -0.32 0.42 16 29 H 0.07 0.39 6.30 -51.93 -0.33 0.07 16 30 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 31 H 0.03 0.17 6.30 -51.93 -0.33 -0.16 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.37 6.40 -51.93 -0.33 0.04 16 34 H 0.06 0.42 6.49 -51.93 -0.34 0.09 16 35 H 0.06 0.47 6.86 -51.93 -0.36 0.12 16 36 H 0.06 0.34 6.40 -51.93 -0.33 0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.79 6.35 -51.93 -0.33 0.46 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 4.17 5.18 -40.82 -0.21 3.96 16 41 H 0.12 1.25 6.40 -52.49 -0.34 0.91 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 3.12 7.65 -52.49 -0.40 2.71 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -32.71 371.97 -9.39 -42.09 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.45 Total: 2.57 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.66 Total: -13.65 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.64 Total: -39.19 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.71 -9.39 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350107305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.402 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds