Wall clock time and date at job start Tue Mar 31 2020 14:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00001 * 2 1 4 4 C 1.46896 * 110.99946 * 123.95203 * 2 1 3 5 5 C 1.53001 * 109.47242 * 296.04632 * 4 2 1 6 6 C 1.53004 * 109.47407 * 176.04768 * 4 2 1 7 7 C 1.53004 * 109.47309 * 56.04871 * 4 2 1 8 8 N 1.46492 * 109.47018 * 59.99910 * 7 4 2 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 4 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09001 * 109.47565 * 296.04486 * 1 2 3 27 27 H 1.09002 * 109.47464 * 56.04709 * 1 2 3 28 28 H 1.09003 * 109.47319 * 176.04788 * 1 2 3 29 29 H 1.08998 * 109.47274 * 183.95205 * 3 2 1 30 30 H 1.08996 * 109.46871 * 303.95387 * 3 2 1 31 31 H 1.09004 * 109.46993 * 63.95071 * 3 2 1 32 32 H 1.09004 * 109.46862 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47519 * 299.99751 * 5 4 2 34 34 H 1.08998 * 109.46951 * 60.00476 * 5 4 2 35 35 H 1.09002 * 109.46676 * 300.00017 * 6 4 2 36 36 H 1.08998 * 109.46830 * 59.99678 * 6 4 2 37 37 H 1.08994 * 109.47261 * 179.97438 * 6 4 2 38 38 H 1.09005 * 109.46655 * 299.99919 * 7 4 2 39 39 H 1.09002 * 109.47164 * 179.97438 * 7 4 2 40 40 H 0.96996 * 120.00373 * 359.97438 * 8 7 4 41 41 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 42 42 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 44 44 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5868 -0.0836 2.4447 6 6 3.5217 -0.8263 1.0493 7 6 1.4260 -2.1857 1.1038 8 7 1.8173 -2.8390 -0.1477 9 6 1.4259 -4.1041 -0.3985 10 8 0.7488 -4.7031 0.4140 11 6 1.8204 -4.7634 -1.6619 12 6 2.5980 -4.0768 -2.5972 13 6 2.9650 -4.6933 -3.7765 14 6 2.5715 -5.9924 -4.0344 15 6 1.7917 -6.6840 -3.1121 16 16 1.2858 -8.3377 -3.4495 17 6 -0.3034 -8.0352 -4.1476 18 1 -0.6328 -7.0215 -4.3215 19 6 -1.1316 -9.0993 -4.4739 20 7 -0.7300 -10.3348 -4.2625 21 14 -2.8163 -8.7785 -5.2147 22 1 -3.0267 -7.3149 -5.3507 23 1 -2.8984 -9.4174 -6.5528 24 1 -3.8631 -9.3485 -4.3290 25 6 1.4172 -6.0718 -1.9232 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 1.9771 -0.6522 3.2888 33 1 1.9925 0.9278 2.4688 34 1 0.4995 -0.0407 2.5076 35 1 3.8127 -1.3125 0.1181 36 1 3.9273 0.1851 1.0734 37 1 3.9123 -1.3943 1.8936 38 1 0.3387 -2.1426 1.1667 39 1 1.8170 -2.7541 1.9476 40 1 2.3573 -2.3609 -0.7962 41 1 2.9123 -3.0630 -2.3976 42 1 3.5660 -4.1598 -4.4980 43 1 2.8658 -6.4711 -4.9568 44 1 -1.3093 -11.0787 -4.4904 45 1 0.8156 -6.6073 -1.2037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350107305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:49 Heat of formation + Delta-G solvation = -27.735798 kcal Electronic energy + Delta-G solvation = -24650.286655 eV Core-core repulsion = 21179.035129 eV Total energy + Delta-G solvation = -3471.251526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39950 -40.11014 -38.96411 -35.60839 -34.65525 -33.18457 -32.07890 -31.83130 -29.46435 -28.03629 -27.74529 -26.81649 -25.04407 -24.39108 -23.49463 -21.58128 -20.22604 -19.72209 -18.85810 -17.53446 -17.29247 -16.93812 -16.85012 -16.61189 -16.02607 -15.73942 -15.69217 -15.50726 -15.14044 -14.77838 -14.59808 -14.57695 -14.09557 -13.84885 -13.53678 -13.33662 -13.24307 -13.06172 -12.98316 -12.88104 -12.77182 -12.63849 -12.46272 -12.37881 -12.16444 -12.08669 -11.73109 -11.60005 -11.25989 -11.11448 -10.74322 -10.22401 -9.86360 -9.67860 -9.25352 -8.80198 -8.39430 -6.19212 -0.15825 0.27251 1.29513 1.36148 1.46452 1.66077 1.82293 2.11593 2.24780 2.82299 2.93500 2.94869 3.42142 3.57425 3.72290 3.88991 3.96160 4.02851 4.11079 4.24686 4.37531 4.38992 4.50000 4.53676 4.60466 4.65868 4.69812 4.74264 4.77888 4.85685 4.92949 4.93640 4.94228 5.04945 5.10901 5.24381 5.25009 5.33665 5.37618 5.38878 5.40127 5.52118 5.88202 6.07190 6.12469 6.16023 6.52956 7.01008 7.18026 8.67947 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.002766 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.604927 B =10119.297861 C =10554.346571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.018 3.982 4 C 0.099 3.901 5 C -0.177 4.177 6 C -0.141 4.141 7 C 0.129 3.871 8 N -0.693 5.693 9 C 0.559 3.441 10 O -0.587 6.587 11 C -0.155 4.155 12 C -0.062 4.062 13 C -0.120 4.120 14 C -0.063 4.063 15 C -0.128 4.128 16 S -0.096 6.096 17 C -0.534 4.534 18 H 0.066 0.934 19 C 0.019 3.981 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.265 1.265 24 H -0.272 1.272 25 C -0.046 4.046 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.417 0.583 41 H 0.169 0.831 42 H 0.176 0.824 43 H 0.136 0.864 44 H 0.274 0.726 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 27.657 8.010 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.130 4.130 4 C 0.009 3.991 5 C -0.236 4.236 6 C -0.198 4.198 7 C 0.005 3.995 8 N -0.345 5.345 9 C 0.347 3.653 10 O -0.469 6.469 11 C -0.160 4.160 12 C -0.080 4.080 13 C -0.139 4.139 14 C -0.084 4.084 15 C -0.240 4.240 16 S 0.139 5.861 17 C -0.682 4.682 18 H 0.085 0.915 19 C -0.186 4.186 20 N -0.543 5.543 21 Si 0.814 3.186 22 H -0.191 1.191 23 H -0.189 1.189 24 H -0.198 1.198 25 C -0.068 4.068 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.257 0.743 41 H 0.186 0.814 42 H 0.193 0.807 43 H 0.154 0.846 44 H 0.083 0.917 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.714 25.799 8.317 28.795 hybrid contribution -2.030 0.983 0.131 2.260 sum 7.684 26.783 8.448 29.116 Atomic orbital electron populations 1.22453 0.87753 1.01697 1.01206 1.62214 1.07815 1.15010 1.41418 1.22539 1.01636 0.87684 1.01113 1.21293 0.96614 0.90976 0.90248 1.22379 1.01913 1.02019 0.97308 1.21924 0.91780 1.03359 1.02786 1.21530 0.99505 0.92415 0.86058 1.45570 1.54445 1.12457 1.22065 1.18408 0.78982 0.82147 0.85749 1.90748 1.40769 1.65944 1.49411 1.19960 1.04602 0.94928 0.96544 1.21676 0.93929 1.00213 0.92211 1.21543 1.00643 0.93720 0.98009 1.22067 0.93790 0.94915 0.97623 1.22483 1.02934 1.01273 0.97280 1.83465 1.21118 1.01177 1.80331 1.23089 1.02165 0.95551 1.47363 0.91547 1.26014 1.02927 0.94048 0.95624 1.70114 1.38728 0.99110 1.46336 0.84992 0.76610 0.78700 0.78247 1.19051 1.18938 1.19754 1.21613 0.95680 0.94052 0.95415 0.94564 0.90720 0.92912 0.89919 0.91037 0.94670 0.91130 0.90340 0.92590 0.91715 0.90425 0.91603 0.92601 0.91531 0.74326 0.81366 0.80696 0.84647 0.91691 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.80 127.69 1.12 1.37 16 2 N -0.54 -6.81 4.52 -898.68 -4.06 -10.87 16 3 C 0.02 0.15 8.82 127.69 1.13 1.28 16 4 C 0.10 1.25 0.37 3.53 0.00 1.25 16 5 C -0.18 -1.88 7.78 71.98 0.56 -1.32 16 6 C -0.14 -1.39 8.07 71.98 0.58 -0.81 16 7 C 0.13 2.56 4.09 86.38 0.35 2.91 16 8 N -0.69 -15.46 5.08 -465.94 -2.37 -17.82 16 9 C 0.56 18.46 7.77 86.79 0.67 19.13 16 10 O -0.59 -24.87 16.34 -3.88 -0.06 -24.93 16 11 C -0.16 -5.28 5.87 -20.11 -0.12 -5.40 16 12 C -0.06 -1.50 9.54 22.57 0.22 -1.29 16 13 C -0.12 -3.01 10.02 22.21 0.22 -2.78 16 14 C -0.06 -2.24 9.79 22.48 0.22 -2.02 16 15 C -0.13 -5.81 5.45 22.65 0.12 -5.69 16 16 S -0.10 -5.33 21.40 -56.49 -1.21 -6.54 16 17 C -0.53 -31.94 9.46 67.94 0.64 -31.30 16 18 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 19 C 0.02 1.11 5.49 84.84 0.47 1.57 16 20 N -0.91 -55.40 13.22 21.64 0.29 -55.11 16 21 Si 0.99 45.35 29.55 68.60 2.03 47.38 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C -0.05 -2.00 9.34 22.70 0.21 -1.79 16 26 H 0.04 0.47 6.40 -2.39 -0.02 0.46 16 27 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 28 H 0.05 1.00 6.24 -2.39 -0.01 0.99 16 29 H 0.08 0.55 6.30 -2.39 -0.02 0.53 16 30 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 31 H 0.03 0.27 6.30 -2.38 -0.02 0.26 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.08 0.65 6.40 -2.39 -0.02 0.63 16 34 H 0.06 0.67 6.49 -2.39 -0.02 0.66 16 35 H 0.06 0.66 6.86 -2.39 -0.02 0.64 16 36 H 0.08 0.54 6.40 -2.39 -0.02 0.53 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 1.29 6.35 -2.38 -0.02 1.27 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.42 7.03 5.18 -92.71 -0.48 6.55 16 41 H 0.17 2.44 6.40 -2.91 -0.02 2.42 16 42 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.10 5.07 7.65 -2.91 -0.02 5.05 16 Total: -1.00 -77.38 371.97 1.54 -75.84 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.52 Total: 16.94 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 6.40 Total: -24.89 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -6.14 Total: -83.81 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.21 Total: -6.54 kcal Total: -77.38 1.54 -75.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350107305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.102 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds