Wall clock time and date at job start Tue Mar 31 2020 14:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46608 * 2 1 4 4 C 1.52998 * 109.46996 * 119.99618 * 2 1 3 5 5 H 1.09000 * 109.47280 * 297.02883 * 4 2 1 6 6 N 1.46502 * 109.46833 * 177.03097 * 4 2 1 7 7 C 1.34772 * 120.00283 * 85.00560 * 6 4 2 8 8 O 1.21570 * 120.00049 * 359.97438 * 7 6 4 9 9 C 1.47723 * 119.99977 * 180.02562 * 7 6 4 10 10 C 1.39654 * 120.11997 * 359.71874 * 9 7 6 11 11 C 1.37837 * 119.87886 * 179.74245 * 10 9 7 12 12 C 1.38657 * 120.11989 * 0.51519 * 11 10 9 13 13 F 1.35091 * 119.88288 * 179.73958 * 12 11 10 14 14 C 1.38658 * 120.23844 * 359.76276 * 12 11 10 15 15 C 1.37839 * 120.11631 * 359.97438 * 14 12 11 16 16 C 1.50704 * 109.47055 * 57.03040 * 4 2 1 17 17 O 1.21289 * 119.99815 * 92.28947 * 16 4 2 18 18 N 1.34773 * 119.99951 * 272.29462 * 16 4 2 19 19 C 1.46498 * 119.99775 * 354.38058 * 18 16 4 20 20 C 1.37099 * 120.00136 * 174.38716 * 18 16 4 21 21 H 1.08007 * 119.99773 * 6.40766 * 20 18 16 22 22 C 1.38945 * 120.00080 * 186.41216 * 20 18 16 23 23 N 1.31408 * 120.00344 * 18.34419 * 22 20 18 24 24 Si 1.86799 * 119.99721 * 198.35231 * 22 20 18 25 25 H 1.48501 * 109.47435 * 94.94407 * 24 22 20 26 26 H 1.48502 * 109.46905 * 214.94023 * 24 22 20 27 27 H 1.48501 * 109.47105 * 334.94155 * 24 22 20 28 28 H 1.08994 * 109.47559 * 298.14178 * 1 2 3 29 29 H 1.09003 * 109.46938 * 58.14490 * 1 2 3 30 30 H 1.09003 * 109.46826 * 178.13576 * 1 2 3 31 31 H 1.08998 * 109.47532 * 240.00475 * 2 1 3 32 32 H 1.09005 * 109.46835 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47665 * 299.99587 * 3 2 1 34 34 H 1.09003 * 109.47205 * 60.00227 * 3 2 1 35 35 H 0.97008 * 119.99492 * 264.99684 * 6 4 2 36 36 H 1.08000 * 120.05656 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.93931 * 180.25381 * 11 10 9 38 38 H 1.08004 * 119.94125 * 179.97438 * 14 12 11 39 39 H 1.08008 * 120.05715 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47586 * 355.27952 * 19 18 16 41 41 H 1.08998 * 109.47056 * 115.28532 * 19 18 16 42 42 H 1.09000 * 109.47209 * 235.27809 * 19 18 16 43 43 H 0.96996 * 120.00437 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7208 -0.1775 2.1384 6 7 3.5033 -0.7834 1.2140 7 6 4.2331 0.2529 1.6720 8 8 3.6772 1.2395 2.1141 9 6 5.7086 0.1903 1.6359 10 6 6.3498 -0.9439 1.1331 11 6 7.7267 -0.9949 1.0968 12 6 8.4752 0.0729 1.5682 13 9 9.8245 0.0157 1.5353 14 6 7.8437 1.1991 2.0738 15 6 6.4673 1.2627 2.1098 16 6 1.4784 -2.1192 1.2867 17 8 2.1030 -3.0369 0.7980 18 7 0.2822 -2.3496 1.8631 19 6 -0.4154 -1.2667 2.5609 20 6 -0.2818 -3.5974 1.7966 21 1 0.2759 -4.4203 1.3741 22 6 -1.5709 -3.8035 2.2724 23 7 -2.3779 -2.7813 2.4477 24 14 -2.1567 -5.5337 2.6634 25 1 -1.9584 -5.8086 4.1092 26 1 -3.5986 -5.6553 2.3296 27 1 -1.3788 -6.5125 1.8621 28 1 -0.3634 0.4847 0.9061 29 1 -0.3633 0.5424 -0.8729 30 1 -0.3633 -1.0272 -0.0334 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9468 -1.5707 0.8611 36 1 5.7677 -1.7780 0.7699 37 1 8.2236 -1.8698 0.7044 38 1 8.4314 2.0279 2.4402 39 1 5.9764 2.1402 2.5042 40 1 0.2185 -0.3803 2.5819 41 1 -1.3442 -1.0370 2.0387 42 1 -0.6397 -1.5772 3.5814 43 1 -3.2779 -2.9252 2.7795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354144171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:01 Heat of formation + Delta-G solvation = -74.499093 kcal Electronic energy + Delta-G solvation = -27646.330716 eV Core-core repulsion = 23606.838206 eV Total energy + Delta-G solvation = -4039.492511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.21671 -40.48859 -39.12854 -37.93500 -35.46836 -34.91265 -33.29068 -31.63328 -31.37068 -30.81406 -27.59303 -26.59375 -26.02382 -24.37051 -23.51875 -23.05707 -20.62577 -20.38887 -19.17580 -18.10636 -17.57329 -16.95534 -16.65910 -16.14343 -15.91106 -15.44912 -15.34950 -15.13611 -14.59895 -14.27286 -14.10093 -14.06780 -13.84721 -13.38895 -13.11829 -12.87479 -12.81439 -12.39372 -12.26694 -11.98244 -11.89365 -11.77105 -11.40782 -11.28798 -11.16502 -10.99312 -10.91998 -10.49295 -10.41958 -10.32751 -10.13538 -9.79594 -9.44994 -9.14262 -9.03975 -8.80892 -8.40149 -7.89979 -6.36858 -3.90228 0.49064 0.94836 2.71677 3.07484 3.19152 3.22699 3.28517 3.61598 3.73820 3.90097 4.06746 4.41344 4.56461 4.69180 4.74710 4.95345 5.01744 5.04603 5.32413 5.35842 5.50102 5.54338 5.62426 5.73584 5.78791 5.83208 5.90800 6.05023 6.07499 6.09534 6.26649 6.30321 6.39531 6.46385 6.50647 6.63988 6.78233 6.86815 6.89976 7.29288 7.50687 7.71610 7.95211 8.33877 8.38189 9.06109 9.32413 9.82571 10.58045 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003150 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.632433 B = 8885.829485 C = 9759.321350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.135 4.135 4 C 0.135 3.865 5 H 0.103 0.897 6 N -0.699 5.699 7 C 0.556 3.444 8 O -0.536 6.536 9 C -0.139 4.139 10 C -0.056 4.056 11 C -0.160 4.160 12 C 0.118 3.882 13 F -0.137 7.137 14 C -0.164 4.164 15 C -0.032 4.032 16 C 0.433 3.567 17 O -0.597 6.597 18 N -0.430 5.430 19 C 0.094 3.906 20 C -0.310 4.310 21 H 0.106 0.894 22 C 0.033 3.967 23 N -0.873 5.873 24 Si 0.926 3.074 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.268 1.268 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.406 0.594 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.614 8.172 -1.674 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.192 4.192 4 C 0.027 3.973 5 H 0.121 0.879 6 N -0.351 5.351 7 C 0.343 3.657 8 O -0.415 6.415 9 C -0.142 4.142 10 C -0.074 4.074 11 C -0.179 4.179 12 C 0.098 3.902 13 F -0.116 7.116 14 C -0.183 4.183 15 C -0.051 4.051 16 C 0.221 3.779 17 O -0.483 6.483 18 N -0.147 5.147 19 C -0.050 4.050 20 C -0.438 4.438 21 H 0.124 0.876 22 C -0.171 4.171 23 N -0.513 5.513 24 Si 0.753 3.247 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.193 1.193 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.053 0.947 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.299 8.419 -1.511 15.812 hybrid contribution 0.011 -1.191 0.138 1.199 sum 13.310 7.228 -1.373 15.207 Atomic orbital electron populations 1.22093 0.93737 1.03685 1.01670 1.21356 0.96829 0.96071 0.97064 1.21872 1.00827 0.95242 1.01262 1.21019 0.79369 0.96560 1.00309 0.87941 1.45746 1.06836 1.19649 1.62827 1.18026 0.86327 0.83208 0.78125 1.90774 1.72461 1.31695 1.46527 1.20121 0.93711 0.96112 1.04278 1.21331 0.93876 0.97101 0.95121 1.21101 0.94223 0.99000 1.03569 1.17977 0.76861 0.95708 0.99618 1.91512 1.29225 1.96687 1.94167 1.21127 0.95237 0.98202 1.03684 1.21150 0.92151 0.97887 0.93907 1.19649 0.84246 0.89040 0.85003 1.90484 1.60464 1.45039 1.52359 1.43633 1.15865 1.10559 1.44624 1.22136 0.97399 0.87385 0.98049 1.19771 0.97883 0.86327 1.39770 0.87604 1.25270 0.95380 0.99479 0.96943 1.70049 1.07023 1.30276 1.43911 0.85910 0.77767 0.82115 0.78935 1.20375 1.20941 1.19289 0.91931 0.93075 0.90677 0.91100 0.93033 0.93620 0.91984 0.75585 0.84097 0.84025 0.84098 0.83490 0.94669 0.88641 0.93169 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 7.44 37.16 0.28 -2.38 16 2 C -0.09 -1.58 2.70 -90.62 -0.24 -1.82 16 3 C -0.13 -2.05 7.76 37.16 0.29 -1.76 16 4 C 0.14 2.52 1.83 -69.08 -0.13 2.40 16 5 H 0.10 1.97 5.27 -51.93 -0.27 1.70 16 6 N -0.70 -11.45 4.94 -55.92 -0.28 -11.72 16 7 C 0.56 8.54 6.25 -12.39 -0.08 8.47 16 8 O -0.54 -9.31 13.47 5.30 0.07 -9.24 16 9 C -0.14 -1.73 5.87 -104.97 -0.62 -2.34 16 10 C -0.06 -0.60 9.54 -39.20 -0.37 -0.97 16 11 C -0.16 -1.54 10.01 -39.57 -0.40 -1.94 16 12 C 0.12 1.18 7.31 -39.27 -0.29 0.90 16 13 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 14 C -0.16 -1.54 10.01 -39.57 -0.40 -1.94 16 15 C -0.03 -0.35 9.59 -39.20 -0.38 -0.72 16 16 C 0.43 9.94 5.97 -10.99 -0.07 9.88 16 17 O -0.60 -15.19 15.65 5.55 0.09 -15.10 16 18 N -0.43 -10.47 2.30 -122.19 -0.28 -10.75 16 19 C 0.09 2.04 6.63 59.85 0.40 2.44 16 20 C -0.31 -8.26 9.51 -14.93 -0.14 -8.40 16 21 H 0.11 2.97 7.24 -52.48 -0.38 2.59 16 22 C 0.03 0.83 5.24 -17.47 -0.09 0.74 16 23 N -0.87 -21.96 10.06 55.50 0.56 -21.40 16 24 Si 0.93 20.06 29.59 -169.99 -5.03 15.03 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 H 0.06 1.05 6.13 -51.93 -0.32 0.73 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.54 6.24 -51.93 -0.32 1.22 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.80 5.69 -51.93 -0.30 0.50 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 35 H 0.41 6.37 5.84 -40.82 -0.24 6.13 16 36 H 0.14 1.40 6.40 -52.49 -0.34 1.06 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.15 1.52 7.65 -52.48 -0.40 1.12 16 40 H 0.03 0.67 4.31 -51.93 -0.22 0.45 16 41 H 0.10 2.17 5.85 -51.93 -0.30 1.87 16 42 H 0.05 1.15 7.73 -51.93 -0.40 0.74 16 43 H 0.27 6.41 8.31 -40.82 -0.34 6.08 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -29.15 345.17 -7.01 -36.15 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.15 Total: 10.67 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.23 Total: 2.54 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.00 Total: -43.87 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.16 Total: -24.34 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.15 -7.01 -36.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354144171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.346 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds