Wall clock time and date at job start Tue Mar 31 2020 14:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46608 * 2 1 4 4 C 1.52998 * 109.46996 * 119.99618 * 2 1 3 5 5 H 1.09000 * 109.47280 * 297.02883 * 4 2 1 6 6 N 1.46502 * 109.46833 * 177.03097 * 4 2 1 7 7 C 1.34772 * 120.00283 * 85.00560 * 6 4 2 8 8 O 1.21570 * 120.00049 * 359.97438 * 7 6 4 9 9 C 1.47723 * 119.99977 * 180.02562 * 7 6 4 10 10 C 1.39654 * 120.11997 * 359.71874 * 9 7 6 11 11 C 1.37837 * 119.87886 * 179.74245 * 10 9 7 12 12 C 1.38657 * 120.11989 * 0.51519 * 11 10 9 13 13 F 1.35091 * 119.88288 * 179.73958 * 12 11 10 14 14 C 1.38658 * 120.23844 * 359.76276 * 12 11 10 15 15 C 1.37839 * 120.11631 * 359.97438 * 14 12 11 16 16 C 1.50704 * 109.47055 * 57.03040 * 4 2 1 17 17 O 1.21289 * 119.99815 * 92.28947 * 16 4 2 18 18 N 1.34773 * 119.99951 * 272.29462 * 16 4 2 19 19 C 1.46498 * 119.99775 * 354.38058 * 18 16 4 20 20 C 1.37099 * 120.00136 * 174.38716 * 18 16 4 21 21 H 1.08007 * 119.99773 * 6.40766 * 20 18 16 22 22 C 1.38945 * 120.00080 * 186.41216 * 20 18 16 23 23 N 1.31408 * 120.00344 * 18.34419 * 22 20 18 24 24 Si 1.86799 * 119.99721 * 198.35231 * 22 20 18 25 25 H 1.48501 * 109.47435 * 94.94407 * 24 22 20 26 26 H 1.48502 * 109.46905 * 214.94023 * 24 22 20 27 27 H 1.48501 * 109.47105 * 334.94155 * 24 22 20 28 28 H 1.08994 * 109.47559 * 298.14178 * 1 2 3 29 29 H 1.09003 * 109.46938 * 58.14490 * 1 2 3 30 30 H 1.09003 * 109.46826 * 178.13576 * 1 2 3 31 31 H 1.08998 * 109.47532 * 240.00475 * 2 1 3 32 32 H 1.09005 * 109.46835 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47665 * 299.99587 * 3 2 1 34 34 H 1.09003 * 109.47205 * 60.00227 * 3 2 1 35 35 H 0.97008 * 119.99492 * 264.99684 * 6 4 2 36 36 H 1.08000 * 120.05656 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.93931 * 180.25381 * 11 10 9 38 38 H 1.08004 * 119.94125 * 179.97438 * 14 12 11 39 39 H 1.08008 * 120.05715 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47586 * 355.27952 * 19 18 16 41 41 H 1.08998 * 109.47056 * 115.28532 * 19 18 16 42 42 H 1.09000 * 109.47209 * 235.27809 * 19 18 16 43 43 H 0.96996 * 120.00437 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7208 -0.1775 2.1384 6 7 3.5033 -0.7834 1.2140 7 6 4.2331 0.2529 1.6720 8 8 3.6772 1.2395 2.1141 9 6 5.7086 0.1903 1.6359 10 6 6.3498 -0.9439 1.1331 11 6 7.7267 -0.9949 1.0968 12 6 8.4752 0.0729 1.5682 13 9 9.8245 0.0157 1.5353 14 6 7.8437 1.1991 2.0738 15 6 6.4673 1.2627 2.1098 16 6 1.4784 -2.1192 1.2867 17 8 2.1030 -3.0369 0.7980 18 7 0.2822 -2.3496 1.8631 19 6 -0.4154 -1.2667 2.5609 20 6 -0.2818 -3.5974 1.7966 21 1 0.2759 -4.4203 1.3741 22 6 -1.5709 -3.8035 2.2724 23 7 -2.3779 -2.7813 2.4477 24 14 -2.1567 -5.5337 2.6634 25 1 -1.9584 -5.8086 4.1092 26 1 -3.5986 -5.6553 2.3296 27 1 -1.3788 -6.5125 1.8621 28 1 -0.3634 0.4847 0.9061 29 1 -0.3633 0.5424 -0.8729 30 1 -0.3633 -1.0272 -0.0334 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9468 -1.5707 0.8611 36 1 5.7677 -1.7780 0.7699 37 1 8.2236 -1.8698 0.7044 38 1 8.4314 2.0279 2.4402 39 1 5.9764 2.1402 2.5042 40 1 0.2185 -0.3803 2.5819 41 1 -1.3442 -1.0370 2.0387 42 1 -0.6397 -1.5772 3.5814 43 1 -3.2779 -2.9252 2.7795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354144171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:00 Heat of formation + Delta-G solvation = -90.911960 kcal Electronic energy + Delta-G solvation = -27647.042432 eV Core-core repulsion = 23606.838206 eV Total energy + Delta-G solvation = -4040.204226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01557 -41.80760 -40.52365 -39.11827 -36.99871 -36.74875 -34.61596 -33.54406 -32.19374 -31.76488 -29.19592 -28.08489 -27.61604 -26.08405 -24.56773 -23.92859 -22.08456 -21.63575 -20.61997 -19.32333 -18.88611 -18.58560 -17.84447 -17.53904 -16.91404 -16.71701 -16.62629 -16.48830 -16.05984 -15.82109 -15.72785 -15.16918 -14.79612 -14.60951 -14.25042 -14.22314 -13.94261 -13.78235 -13.74825 -13.50240 -13.31776 -13.19661 -12.98066 -12.88876 -12.61786 -12.38596 -12.25981 -12.12398 -12.07694 -11.91401 -11.64322 -11.08527 -11.01419 -10.46992 -10.22784 -10.07983 -9.83489 -9.79064 -8.29842 -5.91997 -0.40092 0.16954 1.33816 1.42460 1.53736 1.67305 1.83132 2.02941 2.30253 2.66907 3.01061 3.07837 3.10222 3.58209 3.65036 3.82774 3.84773 3.88978 3.91764 4.15665 4.21809 4.30283 4.35786 4.60999 4.70544 4.74407 4.81991 4.87242 4.95677 4.99342 5.00215 5.07221 5.08581 5.15353 5.21693 5.27206 5.39761 5.45401 5.46779 5.53413 5.72458 6.00287 6.40765 6.48718 7.09570 7.12029 7.42602 7.93307 8.63206 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003150 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.632433 B = 8885.829485 C = 9759.321350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.122 4.122 4 C 0.147 3.853 5 H 0.099 0.901 6 N -0.702 5.702 7 C 0.559 3.441 8 O -0.558 6.558 9 C -0.157 4.157 10 C -0.057 4.057 11 C -0.157 4.157 12 C 0.117 3.883 13 F -0.138 7.138 14 C -0.155 4.155 15 C -0.033 4.033 16 C 0.430 3.570 17 O -0.627 6.627 18 N -0.443 5.443 19 C 0.107 3.893 20 C -0.347 4.347 21 H 0.080 0.920 22 C 0.004 3.996 23 N -0.883 5.883 24 Si 0.987 3.013 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.145 0.855 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.151 0.849 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.628 9.089 -1.655 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.180 4.180 4 C 0.039 3.961 5 H 0.116 0.884 6 N -0.354 5.354 7 C 0.348 3.652 8 O -0.438 6.438 9 C -0.160 4.160 10 C -0.076 4.076 11 C -0.176 4.176 12 C 0.097 3.903 13 F -0.116 7.116 14 C -0.174 4.174 15 C -0.052 4.052 16 C 0.219 3.781 17 O -0.516 6.516 18 N -0.159 5.159 19 C -0.035 4.035 20 C -0.475 4.475 21 H 0.098 0.902 22 C -0.199 4.199 23 N -0.521 5.521 24 Si 0.810 3.190 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.317 9.359 -1.487 17.169 hybrid contribution -0.227 -1.460 0.113 1.482 sum 14.090 7.900 -1.375 16.212 Atomic orbital electron populations 1.22004 0.93869 1.01626 1.03000 1.21339 0.96589 0.97123 0.95789 1.21750 1.00531 0.93626 1.02065 1.20804 0.80829 0.93428 1.01048 0.88375 1.45729 1.05808 1.20375 1.63474 1.18423 0.87485 0.82297 0.76996 1.90753 1.73217 1.32356 1.47459 1.19969 0.91820 0.97677 1.06538 1.21377 0.94473 0.96716 0.94989 1.21298 0.93677 0.99674 1.02908 1.18129 0.76870 0.95959 0.99339 1.91518 1.29266 1.96693 1.94122 1.21337 0.94686 0.98710 1.02659 1.21225 0.92714 0.97522 0.93734 1.20391 0.83576 0.90498 0.83612 1.90448 1.61206 1.46608 1.53316 1.43784 1.16456 1.10490 1.45202 1.22002 0.97406 0.87536 0.96584 1.19690 0.98744 0.86989 1.42083 0.90166 1.25958 0.94931 1.02988 0.96046 1.70114 1.07246 1.31568 1.43220 0.85019 0.77501 0.77769 0.78664 1.19714 1.19754 1.19878 0.91567 0.90728 0.94364 0.91581 0.93326 0.91434 0.92469 0.75255 0.83748 0.81991 0.81571 0.83149 0.92078 0.89608 0.94668 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 7.44 71.98 0.54 -4.47 16 2 C -0.09 -2.94 2.70 -10.79 -0.03 -2.97 16 3 C -0.12 -3.51 7.76 71.98 0.56 -2.96 16 4 C 0.15 5.52 1.83 44.25 0.08 5.60 16 5 H 0.10 3.76 5.27 -2.39 -0.01 3.75 16 6 N -0.70 -22.98 4.94 -449.09 -2.22 -25.20 16 7 C 0.56 16.87 6.25 86.75 0.54 17.41 16 8 O -0.56 -18.98 13.47 -3.94 -0.05 -19.03 16 9 C -0.16 -3.73 5.87 -20.09 -0.12 -3.85 16 10 C -0.06 -1.15 9.54 22.52 0.21 -0.94 16 11 C -0.16 -2.70 10.01 22.27 0.22 -2.48 16 12 C 0.12 2.05 7.31 22.47 0.16 2.22 16 13 F -0.14 -2.50 17.26 44.97 0.78 -1.72 16 14 C -0.16 -2.53 10.01 22.28 0.22 -2.31 16 15 C -0.03 -0.66 9.59 22.52 0.22 -0.45 16 16 C 0.43 20.31 5.97 87.66 0.52 20.83 16 17 O -0.63 -33.02 15.65 -3.06 -0.05 -33.06 16 18 N -0.44 -22.19 2.30 -658.90 -1.51 -23.70 16 19 C 0.11 4.76 6.63 127.77 0.85 5.61 16 20 C -0.35 -19.13 9.51 84.04 0.80 -18.34 16 21 H 0.08 4.73 7.24 -2.91 -0.02 4.71 16 22 C 0.00 0.19 5.24 84.93 0.45 0.63 16 23 N -0.88 -44.59 10.06 21.66 0.22 -44.37 16 24 Si 0.99 41.31 29.59 68.60 2.03 43.34 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.07 2.17 6.13 -2.39 -0.01 2.15 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.04 1.58 6.24 -2.39 -0.01 1.57 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.43 5.69 -2.38 -0.01 1.41 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.71 7.72 -2.39 -0.02 1.69 16 35 H 0.41 12.96 5.84 -92.70 -0.54 12.42 16 36 H 0.14 2.77 6.40 -2.91 -0.02 2.75 16 37 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.15 2.88 7.65 -2.91 -0.02 2.86 16 40 H 0.06 2.34 4.31 -2.39 -0.01 2.33 16 41 H 0.09 3.97 5.85 -2.39 -0.01 3.95 16 42 H 0.03 1.63 7.73 -2.39 -0.02 1.61 16 43 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 Total: -1.00 -63.34 345.17 4.94 -58.40 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.52 Total: 31.80 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 5.23 Total: 13.55 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -3.51 Total: -93.28 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.10 Total: -52.09 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -63.34 4.94 -58.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354144171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.512 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds