Wall clock time and date at job start Tue Mar 31 2020 12:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47618 * 2 1 4 4 C 1.38113 * 119.97282 * 99.99697 * 3 2 1 5 5 C 1.38893 * 119.94821 * 180.02562 * 4 3 2 6 6 N 1.39804 * 120.05269 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00085 * 142.93815 * 6 5 4 8 8 O 1.21377 * 119.99836 * 4.38540 * 7 6 5 9 9 C 1.49347 * 120.00126 * 184.39882 * 7 6 5 10 10 O 1.21364 * 119.99864 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99724 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99786 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47303 * 325.00576 * 12 11 9 14 14 C 1.50697 * 109.47556 * 204.99671 * 12 11 9 15 15 H 1.08005 * 119.99841 * 354.79142 * 14 12 11 16 16 C 1.37872 * 120.00254 * 174.78831 * 14 12 11 17 17 N 1.31512 * 119.99960 * 162.97518 * 16 14 12 18 18 Si 1.86808 * 119.99990 * 342.97064 * 16 14 12 19 19 H 1.48498 * 109.47090 * 269.99949 * 18 16 14 20 20 H 1.48498 * 109.46786 * 30.00178 * 18 16 14 21 21 H 1.48493 * 109.46921 * 150.00232 * 18 16 14 22 22 C 1.53007 * 109.46780 * 84.99960 * 12 11 9 23 23 C 1.53000 * 109.47071 * 296.23226 * 22 12 11 24 24 C 1.38942 * 119.89772 * 0.28089 * 5 4 3 25 25 C 1.38067 * 119.94597 * 359.44069 * 24 5 4 26 26 C 1.38467 * 119.97442 * 280.02219 * 3 2 1 27 27 F 1.35102 * 119.94977 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47015 * 59.99498 * 1 2 3 29 29 H 1.08993 * 109.47478 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47107 * 300.00366 * 1 2 3 31 31 H 1.09000 * 109.47307 * 240.00108 * 2 1 3 32 32 H 1.09006 * 109.47246 * 119.99810 * 2 1 3 33 33 H 1.08001 * 120.02949 * 0.02562 * 4 3 2 34 34 H 0.97000 * 120.00239 * 322.93692 * 6 5 4 35 35 H 0.96996 * 120.00393 * 359.97438 * 11 9 7 36 36 H 0.97001 * 120.00329 * 354.91086 * 17 16 14 37 37 H 1.08993 * 109.47377 * 56.23437 * 22 12 11 38 38 H 1.09001 * 109.46750 * 176.23157 * 22 12 11 39 39 H 1.08996 * 109.46952 * 60.00154 * 23 22 12 40 40 H 1.08998 * 109.47071 * 180.02562 * 23 22 12 41 41 H 1.09005 * 109.47194 * 299.99991 * 23 22 12 42 42 H 1.07999 * 120.02537 * 179.70402 * 24 5 4 43 43 H 1.08004 * 119.97133 * 180.27758 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4582 2.0021 1.1783 5 6 2.9207 3.3117 1.1778 6 7 3.3528 3.9021 2.3691 7 6 4.4061 4.7431 2.3612 8 8 4.9295 5.0502 1.3100 9 6 4.9292 5.2968 3.6458 10 8 4.4057 4.9898 4.6968 11 7 5.9827 6.1373 3.6378 12 6 6.4955 6.6809 4.8979 13 1 5.6665 6.8487 5.5854 14 6 7.2000 7.9863 4.6322 15 1 7.3336 8.3310 3.6174 16 6 7.6740 8.7406 5.6844 17 7 8.5635 9.6849 5.4684 18 14 7.0527 8.4213 7.4170 19 1 5.8569 9.2626 7.6769 20 1 6.6895 6.9882 7.5563 21 1 8.1177 8.7594 8.3949 22 6 7.4797 5.6875 5.5188 23 6 6.7429 4.3947 5.8750 24 6 2.9483 4.0360 -0.0076 25 6 2.5270 3.4488 -1.1840 26 6 2.0662 2.1426 -1.1812 27 9 1.6492 1.5719 -2.3325 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4317 1.4387 2.0993 34 1 2.8947 3.7065 3.2014 35 1 6.4013 6.3824 2.7979 36 1 8.9410 9.8022 4.5826 37 1 8.2737 5.4682 4.8050 38 1 7.9118 6.1200 6.4212 39 1 6.3109 3.9623 4.9726 40 1 7.4440 3.6872 6.3178 41 1 5.9490 4.6140 6.5890 42 1 3.3030 5.0561 -0.0095 43 1 2.5525 4.0100 -2.1065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354483584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:46 Heat of formation + Delta-G solvation = -100.344467 kcal Electronic energy + Delta-G solvation = -26692.792527 eV Core-core repulsion = 22652.179276 eV Total energy + Delta-G solvation = -4040.613250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.08925 -41.01148 -39.46794 -38.21743 -35.81118 -35.18949 -33.97524 -32.53423 -31.55431 -30.36078 -29.21279 -27.56221 -24.97427 -24.42840 -22.86667 -22.44790 -21.57453 -20.28166 -19.73932 -18.93830 -17.79285 -17.52358 -17.23488 -16.64275 -16.15228 -15.83233 -15.66599 -15.31568 -14.71684 -14.41630 -14.19487 -14.05630 -13.91587 -13.56994 -13.39504 -13.19987 -13.03774 -12.80433 -12.52474 -12.45459 -12.31423 -12.06641 -11.83044 -11.52894 -11.35391 -11.14958 -10.95344 -10.82439 -10.58319 -10.38187 -10.02597 -9.69323 -9.36146 -9.18471 -9.15261 -8.48249 -8.36784 -8.30708 -6.65999 -4.31335 0.72575 0.92617 1.65040 2.45426 3.22854 3.34492 3.38646 3.51126 3.52210 3.87691 4.02004 4.26644 4.36507 4.44265 4.71572 4.84229 4.92084 4.96200 5.05169 5.07265 5.13957 5.26077 5.52949 5.57345 5.61388 5.84071 5.90617 5.92123 5.96593 5.96940 5.98403 6.11392 6.13747 6.51498 6.61898 6.65337 6.74186 6.84530 6.90400 7.11933 7.21492 7.45555 7.68428 8.12958 8.20765 8.42621 8.71416 9.37501 10.73699 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.002551 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.127008 B =10975.483879 C =11554.127830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.098 4.098 4 C -0.112 4.112 5 C 0.141 3.859 6 N -0.651 5.651 7 C 0.508 3.492 8 O -0.503 6.503 9 C 0.496 3.504 10 O -0.530 6.530 11 N -0.660 5.660 12 C 0.246 3.754 13 H 0.049 0.951 14 C -0.623 4.623 15 H 0.065 0.935 16 C 0.044 3.956 17 N -0.893 5.893 18 Si 1.036 2.964 19 H -0.283 1.283 20 H -0.265 1.265 21 H -0.283 1.283 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.095 4.095 25 C -0.131 4.131 26 C 0.083 3.917 27 F -0.139 7.139 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.424 0.576 35 H 0.406 0.594 36 H 0.272 0.728 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.148 0.852 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -17.540 -9.492 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.132 4.132 5 C 0.047 3.953 6 N -0.299 5.299 7 C 0.291 3.709 8 O -0.376 6.376 9 C 0.274 3.726 10 O -0.409 6.409 11 N -0.309 5.309 12 C 0.143 3.857 13 H 0.066 0.934 14 C -0.660 4.660 15 H 0.083 0.917 16 C -0.164 4.164 17 N -0.525 5.525 18 Si 0.862 3.138 19 H -0.209 1.209 20 H -0.191 1.191 21 H -0.208 1.208 22 C -0.173 4.173 23 C -0.202 4.202 24 C -0.115 4.115 25 C -0.150 4.150 26 C 0.063 3.937 27 F -0.118 7.118 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.263 0.737 35 H 0.241 0.759 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.166 0.834 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.875 -16.929 -7.909 23.274 hybrid contribution -0.062 -0.502 -1.913 1.978 sum -13.937 -17.432 -9.822 24.384 Atomic orbital electron populations 1.21743 0.94320 1.02042 1.02396 1.20481 0.96547 0.91494 1.03496 1.19679 1.01470 0.97243 0.91598 1.20715 1.01658 0.92658 0.98217 1.17746 0.99002 0.91907 0.86683 1.43198 1.31277 1.45203 1.10186 1.20936 0.79905 0.79076 0.90958 1.90751 1.57497 1.56617 1.32710 1.19607 0.83027 0.81927 0.88003 1.90742 1.58982 1.59577 1.31592 1.46221 1.29044 1.42472 1.13121 1.19335 0.93183 0.92225 0.80930 0.93353 1.22064 1.42331 1.05564 0.96063 0.91695 1.25678 0.93406 0.93107 1.04194 1.70813 1.23633 1.32604 1.25451 0.84211 0.76861 0.77128 0.75578 1.20922 1.19055 1.20846 1.22291 0.99006 0.95241 1.00713 1.21896 0.99686 0.97697 1.00914 1.21159 0.98573 1.01131 0.90597 1.21042 1.00676 0.93648 0.99645 1.17514 1.02102 0.92430 0.81656 1.91471 1.87985 1.84854 1.47476 0.92440 0.92078 0.92325 0.90528 0.90355 0.84446 0.73742 0.75878 0.91820 0.92747 0.91455 0.93805 0.94707 0.92620 0.83442 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.15 0.37 -0.61 16 2 C -0.08 -0.61 5.78 -27.89 -0.16 -0.77 16 3 C -0.10 -0.93 5.14 -104.58 -0.54 -1.47 16 4 C -0.11 -1.07 9.59 -39.38 -0.38 -1.44 16 5 C 0.14 1.62 6.25 -83.72 -0.52 1.10 16 6 N -0.65 -7.96 5.32 -10.28 -0.05 -8.01 16 7 C 0.51 7.83 7.72 -11.63 -0.09 7.74 16 8 O -0.50 -8.49 14.06 5.47 0.08 -8.41 16 9 C 0.50 8.87 6.40 -11.64 -0.07 8.79 16 10 O -0.53 -10.06 13.61 5.48 0.07 -9.99 16 11 N -0.66 -13.06 5.00 -55.39 -0.28 -13.33 16 12 C 0.25 5.58 1.80 -69.08 -0.12 5.45 16 13 H 0.05 1.16 6.16 -51.93 -0.32 0.84 16 14 C -0.62 -16.27 9.01 -34.44 -0.31 -16.58 16 15 H 0.06 1.80 7.96 -52.48 -0.42 1.38 16 16 C 0.04 1.18 5.32 -17.82 -0.09 1.09 16 17 N -0.89 -25.95 13.70 55.43 0.76 -25.19 16 18 Si 1.04 23.84 26.22 -169.99 -4.46 19.38 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -5.66 5.59 56.52 0.32 -5.34 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.13 -2.82 4.97 -26.73 -0.13 -2.96 16 23 C -0.14 -2.70 8.49 37.16 0.32 -2.39 16 24 C -0.09 -1.12 8.68 -39.38 -0.34 -1.47 16 25 C -0.13 -1.38 10.02 -39.54 -0.40 -1.77 16 26 C 0.08 0.87 7.24 -39.40 -0.29 0.58 16 27 F -0.14 -1.49 16.65 2.25 0.04 -1.45 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 32 H 0.08 0.47 8.00 -51.93 -0.42 0.06 16 33 H 0.14 1.01 8.04 -52.49 -0.42 0.59 16 34 H 0.42 4.44 8.30 -40.82 -0.34 4.10 16 35 H 0.41 7.76 8.00 -40.82 -0.33 7.44 16 36 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.46 5.14 -51.93 -0.27 1.19 16 39 H 0.04 0.80 5.67 -51.93 -0.29 0.51 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.07 7.77 -51.93 -0.40 0.67 16 42 H 0.15 1.90 6.40 -52.49 -0.34 1.57 16 43 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -29.32 357.55 -6.95 -36.26 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.73 Total: 10.05 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.77 Total: -4.70 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.43 Total: -46.54 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.15 Total: -18.40 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.46 Total: 19.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.32 -6.95 -36.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354483584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.080 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds