Wall clock time and date at job start Tue Mar 31 2020 12:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47618 * 2 1 4 4 C 1.38113 * 119.97282 * 99.99697 * 3 2 1 5 5 C 1.38893 * 119.94821 * 180.02562 * 4 3 2 6 6 N 1.39804 * 120.05269 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00085 * 142.93815 * 6 5 4 8 8 O 1.21377 * 119.99836 * 4.38540 * 7 6 5 9 9 C 1.49347 * 120.00126 * 184.39882 * 7 6 5 10 10 O 1.21364 * 119.99864 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99724 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99786 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47303 * 325.00576 * 12 11 9 14 14 C 1.50697 * 109.47556 * 204.99671 * 12 11 9 15 15 H 1.08005 * 119.99841 * 354.79142 * 14 12 11 16 16 C 1.37872 * 120.00254 * 174.78831 * 14 12 11 17 17 N 1.31512 * 119.99960 * 162.97518 * 16 14 12 18 18 Si 1.86808 * 119.99990 * 342.97064 * 16 14 12 19 19 H 1.48498 * 109.47090 * 269.99949 * 18 16 14 20 20 H 1.48498 * 109.46786 * 30.00178 * 18 16 14 21 21 H 1.48493 * 109.46921 * 150.00232 * 18 16 14 22 22 C 1.53007 * 109.46780 * 84.99960 * 12 11 9 23 23 C 1.53000 * 109.47071 * 296.23226 * 22 12 11 24 24 C 1.38942 * 119.89772 * 0.28089 * 5 4 3 25 25 C 1.38067 * 119.94597 * 359.44069 * 24 5 4 26 26 C 1.38467 * 119.97442 * 280.02219 * 3 2 1 27 27 F 1.35102 * 119.94977 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47015 * 59.99498 * 1 2 3 29 29 H 1.08993 * 109.47478 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47107 * 300.00366 * 1 2 3 31 31 H 1.09000 * 109.47307 * 240.00108 * 2 1 3 32 32 H 1.09006 * 109.47246 * 119.99810 * 2 1 3 33 33 H 1.08001 * 120.02949 * 0.02562 * 4 3 2 34 34 H 0.97000 * 120.00239 * 322.93692 * 6 5 4 35 35 H 0.96996 * 120.00393 * 359.97438 * 11 9 7 36 36 H 0.97001 * 120.00329 * 354.91086 * 17 16 14 37 37 H 1.08993 * 109.47377 * 56.23437 * 22 12 11 38 38 H 1.09001 * 109.46750 * 176.23157 * 22 12 11 39 39 H 1.08996 * 109.46952 * 60.00154 * 23 22 12 40 40 H 1.08998 * 109.47071 * 180.02562 * 23 22 12 41 41 H 1.09005 * 109.47194 * 299.99991 * 23 22 12 42 42 H 1.07999 * 120.02537 * 179.70402 * 24 5 4 43 43 H 1.08004 * 119.97133 * 180.27758 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4582 2.0021 1.1783 5 6 2.9207 3.3117 1.1778 6 7 3.3528 3.9021 2.3691 7 6 4.4061 4.7431 2.3612 8 8 4.9295 5.0502 1.3100 9 6 4.9292 5.2968 3.6458 10 8 4.4057 4.9898 4.6968 11 7 5.9827 6.1373 3.6378 12 6 6.4955 6.6809 4.8979 13 1 5.6665 6.8487 5.5854 14 6 7.2000 7.9863 4.6322 15 1 7.3336 8.3310 3.6174 16 6 7.6740 8.7406 5.6844 17 7 8.5635 9.6849 5.4684 18 14 7.0527 8.4213 7.4170 19 1 5.8569 9.2626 7.6769 20 1 6.6895 6.9882 7.5563 21 1 8.1177 8.7594 8.3949 22 6 7.4797 5.6875 5.5188 23 6 6.7429 4.3947 5.8750 24 6 2.9483 4.0360 -0.0076 25 6 2.5270 3.4488 -1.1840 26 6 2.0662 2.1426 -1.1812 27 9 1.6492 1.5719 -2.3325 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4317 1.4387 2.0993 34 1 2.8947 3.7065 3.2014 35 1 6.4013 6.3824 2.7979 36 1 8.9410 9.8022 4.5826 37 1 8.2737 5.4682 4.8050 38 1 7.9118 6.1200 6.4212 39 1 6.3109 3.9623 4.9726 40 1 7.4440 3.6872 6.3178 41 1 5.9490 4.6140 6.5890 42 1 3.3030 5.0561 -0.0095 43 1 2.5525 4.0100 -2.1065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354483584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:46 Heat of formation + Delta-G solvation = -119.031085 kcal Electronic energy + Delta-G solvation = -26693.602839 eV Core-core repulsion = 22652.179276 eV Total energy + Delta-G solvation = -4041.423563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.92034 -42.19725 -40.65118 -39.40270 -37.35496 -36.29606 -34.78298 -34.46653 -33.17681 -31.15336 -30.07635 -29.31306 -26.28373 -25.15346 -24.26704 -23.65118 -22.70222 -21.54731 -21.22175 -20.42820 -19.22340 -18.62227 -18.34001 -17.64774 -17.52811 -16.95423 -16.86168 -16.62182 -15.71600 -15.56534 -15.35119 -15.06274 -14.90417 -14.73148 -14.53167 -14.50398 -14.35255 -14.18893 -13.91364 -13.79372 -13.56262 -13.12283 -12.83413 -12.66977 -12.66308 -12.47860 -12.31689 -11.99998 -11.82645 -11.76794 -11.39291 -11.33149 -11.13602 -10.71307 -10.55351 -10.01212 -9.99736 -9.22688 -8.81920 -6.47088 -0.22653 0.13214 0.42912 1.23696 1.51140 1.52464 1.72355 2.05522 2.45671 2.49330 2.62293 2.99505 3.22107 3.38733 3.56720 3.71079 4.05028 4.13907 4.23586 4.29512 4.37654 4.41642 4.46389 4.49591 4.59287 4.79486 4.91044 4.92649 5.01543 5.07961 5.10386 5.12349 5.14321 5.14705 5.23463 5.32507 5.36654 5.40665 5.51517 5.60291 5.78029 5.90669 5.98832 6.42306 6.49180 6.67584 6.97242 7.29609 8.56949 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.002551 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.127008 B =10975.483879 C =11554.127830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.096 4.096 4 C -0.101 4.101 5 C 0.123 3.877 6 N -0.632 5.632 7 C 0.516 3.484 8 O -0.522 6.522 9 C 0.500 3.500 10 O -0.537 6.537 11 N -0.670 5.670 12 C 0.251 3.749 13 H 0.041 0.959 14 C -0.620 4.620 15 H 0.035 0.965 16 C -0.003 4.003 17 N -0.926 5.926 18 Si 1.072 2.928 19 H -0.275 1.275 20 H -0.238 1.238 21 H -0.282 1.282 22 C -0.134 4.134 23 C -0.135 4.135 24 C -0.109 4.109 25 C -0.134 4.134 26 C 0.076 3.924 27 F -0.141 7.141 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.434 0.566 35 H 0.407 0.593 36 H 0.258 0.742 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.132 0.868 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 -20.450 -8.690 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.120 4.120 5 C 0.030 3.970 6 N -0.279 5.279 7 C 0.298 3.702 8 O -0.397 6.397 9 C 0.280 3.720 10 O -0.415 6.415 11 N -0.319 5.319 12 C 0.147 3.853 13 H 0.059 0.941 14 C -0.658 4.658 15 H 0.054 0.946 16 C -0.204 4.204 17 N -0.560 5.560 18 Si 0.893 3.107 19 H -0.201 1.201 20 H -0.161 1.161 21 H -0.207 1.207 22 C -0.172 4.172 23 C -0.192 4.192 24 C -0.129 4.129 25 C -0.153 4.153 26 C 0.056 3.944 27 F -0.120 7.120 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.183 0.817 34 H 0.274 0.726 35 H 0.242 0.758 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.150 0.850 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.556 -19.885 -7.130 26.234 hybrid contribution 0.368 0.349 -2.314 2.370 sum -15.188 -19.535 -9.444 26.486 Atomic orbital electron populations 1.21737 0.93736 1.02911 1.01971 1.20573 0.96961 0.90040 1.04461 1.19978 1.00507 0.98245 0.91026 1.20946 1.00071 0.91715 0.99316 1.17895 1.00247 0.92866 0.86017 1.42993 1.29953 1.43896 1.11102 1.20333 0.80713 0.79743 0.89426 1.90760 1.58486 1.57621 1.32795 1.19895 0.82042 0.81073 0.88968 1.90730 1.58910 1.59612 1.32294 1.46052 1.30141 1.43529 1.12184 1.19062 0.92928 0.91248 0.82064 0.94119 1.22236 1.41711 1.07224 0.94621 0.94636 1.26951 0.92959 0.92567 1.07916 1.70927 1.25759 1.34611 1.24733 0.83768 0.76632 0.78790 0.71519 1.20133 1.16103 1.20746 1.22211 0.98685 0.96094 1.00249 1.21790 0.99776 0.96677 1.00985 1.21105 0.99523 1.00794 0.91462 1.21151 1.00428 0.93987 0.99766 1.17696 1.02100 0.92530 0.82071 1.91468 1.87995 1.84829 1.47687 0.93587 0.90615 0.92037 0.90540 0.88466 0.81729 0.72567 0.75771 0.93260 0.92997 0.92003 0.93694 0.92182 0.93003 0.84972 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.08 -0.97 5.78 29.85 0.17 -0.79 16 3 C -0.10 -1.57 5.14 -19.84 -0.10 -1.67 16 4 C -0.10 -1.62 9.59 22.40 0.21 -1.41 16 5 C 0.12 2.63 6.25 38.20 0.24 2.87 16 6 N -0.63 -14.28 5.32 -304.79 -1.62 -15.90 16 7 C 0.52 15.36 7.72 87.24 0.67 16.03 16 8 O -0.52 -17.51 14.06 -3.33 -0.05 -17.56 16 9 C 0.50 17.34 6.40 87.24 0.56 17.90 16 10 O -0.54 -19.33 13.61 -3.29 -0.04 -19.38 16 11 N -0.67 -26.36 5.00 -447.52 -2.24 -28.60 16 12 C 0.25 11.24 1.80 44.25 0.08 11.32 16 13 H 0.04 1.91 6.16 -2.38 -0.01 1.89 16 14 C -0.62 -33.06 9.01 25.60 0.23 -32.83 16 15 H 0.04 2.05 7.96 -2.91 -0.02 2.03 16 16 C 0.00 -0.17 5.32 84.65 0.45 0.28 16 17 N -0.93 -55.30 13.70 21.44 0.29 -55.01 16 18 Si 1.07 47.57 26.22 68.60 1.80 49.37 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.24 -9.39 5.59 99.48 0.56 -8.83 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 C -0.13 -5.45 4.97 30.60 0.15 -5.29 16 23 C -0.14 -4.67 8.49 71.98 0.61 -4.06 16 24 C -0.11 -2.52 8.68 22.40 0.19 -2.33 16 25 C -0.13 -2.71 10.02 22.29 0.22 -2.49 16 26 C 0.08 1.47 7.24 22.39 0.16 1.63 16 27 F -0.14 -2.82 16.65 44.97 0.75 -2.08 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.92 7.94 -2.39 -0.02 0.90 16 32 H 0.10 0.79 8.00 -2.38 -0.02 0.77 16 33 H 0.17 1.73 8.04 -2.91 -0.02 1.71 16 34 H 0.43 8.00 8.30 -92.71 -0.77 7.23 16 35 H 0.41 15.84 8.00 -92.71 -0.74 15.10 16 36 H 0.26 15.58 8.73 -92.71 -0.81 14.77 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 2.57 5.14 -2.39 -0.01 2.56 16 39 H 0.04 1.53 5.67 -2.39 -0.01 1.51 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.83 7.77 -2.38 -0.02 1.81 16 42 H 0.13 3.46 6.40 -2.91 -0.02 3.44 16 43 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -63.50 357.55 2.83 -60.67 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.63 Total: 30.15 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.57 Total: -1.67 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.56 Total: -99.51 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.09 Total: -36.93 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.75 Total: -2.08 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.80 Total: 49.37 kcal Total: -63.50 2.83 -60.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354483584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.360 kcal (2) G-P(sol) polarization free energy of solvation -63.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds