Wall clock time and date at job start Tue Mar 31 2020 12:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47304 * 2 1 4 4 C 1.38112 * 119.97233 * 99.72315 * 3 2 1 5 5 C 1.38896 * 119.94813 * 179.72622 * 4 3 2 6 6 N 1.39807 * 120.05011 * 180.29626 * 5 4 3 7 7 C 1.34784 * 119.99804 * 215.41798 * 6 5 4 8 8 O 1.21385 * 120.00107 * 5.00123 * 7 6 5 9 9 C 1.49345 * 119.99716 * 185.00418 * 7 6 5 10 10 O 1.21361 * 120.00370 * 354.43372 * 9 7 6 11 11 N 1.34781 * 119.99723 * 174.43847 * 9 7 6 12 12 C 1.46503 * 119.99889 * 174.63026 * 11 9 7 13 13 C 1.52994 * 109.47039 * 94.46234 * 12 11 9 14 14 C 1.46499 * 119.99987 * 354.62966 * 11 9 7 15 15 C 1.50700 * 109.47042 * 84.95596 * 14 11 9 16 16 H 1.07995 * 120.00035 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99471 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99625 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00226 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47285 * 90.00241 * 19 17 15 21 21 H 1.48505 * 109.46744 * 209.99617 * 19 17 15 22 22 H 1.48499 * 109.47263 * 329.99349 * 19 17 15 23 23 C 1.38942 * 119.89909 * 0.55422 * 5 4 3 24 24 C 1.38072 * 119.94489 * 359.72276 * 23 5 4 25 25 C 1.38464 * 119.97482 * 280.00265 * 3 2 1 26 26 F 1.35097 * 119.95521 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.46737 * 300.00253 * 1 2 3 28 28 H 1.09005 * 109.46916 * 59.99664 * 1 2 3 29 29 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46889 * 120.00291 * 2 1 3 31 31 H 1.09003 * 109.47194 * 240.00020 * 2 1 3 32 32 H 1.08001 * 120.02748 * 0.02562 * 4 3 2 33 33 H 0.96993 * 120.00314 * 35.41437 * 6 5 4 34 34 H 1.09001 * 109.46811 * 214.46556 * 12 11 9 35 35 H 1.09004 * 109.46961 * 334.46676 * 12 11 9 36 36 H 1.09005 * 109.47155 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47614 * 300.00340 * 13 12 11 38 38 H 1.09004 * 109.46883 * 60.00394 * 13 12 11 39 39 H 1.09002 * 109.46997 * 204.95217 * 14 11 9 40 40 H 1.08997 * 109.46937 * 324.95087 * 14 11 9 41 41 H 0.96998 * 120.00316 * 180.02562 * 18 17 15 42 42 H 1.07989 * 120.02482 * 179.70442 * 23 5 4 43 43 H 1.07996 * 119.96982 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4530 2.0040 1.1792 5 6 2.9212 3.3116 1.1777 6 7 3.3533 3.9019 2.3691 7 6 3.1346 5.2136 2.5893 8 8 2.4839 5.8620 1.7958 9 6 3.6929 5.8691 3.8095 10 8 4.2563 5.2024 4.6526 11 7 3.5709 7.2012 3.9744 12 6 4.0125 7.8283 5.2226 13 6 5.4464 8.3362 5.0587 14 6 2.9967 8.0221 2.9054 15 6 1.4940 8.0151 3.0188 16 1 1.0146 7.4549 3.8079 17 6 0.7312 8.7240 2.1151 18 7 -0.5802 8.7175 2.2137 19 14 1.5604 9.6924 0.7498 20 1 1.7220 8.8250 -0.4446 21 1 0.7238 10.8679 0.3983 22 1 2.8945 10.1543 1.2104 23 6 2.9546 4.0339 -0.0088 24 6 2.5278 3.4486 -1.1842 25 6 2.0667 2.1425 -1.1812 26 9 1.6490 1.5722 -2.3325 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.4223 1.4420 2.1010 33 1 3.8103 3.3676 3.0372 34 1 3.3557 8.6648 5.4612 35 1 3.9764 7.0963 6.0295 36 1 5.7748 8.8031 5.9873 37 1 6.1032 7.4997 4.8201 38 1 5.4825 9.0681 4.2518 39 1 3.3631 9.0447 2.9960 40 1 3.2900 7.6154 1.9377 41 1 -1.1169 9.2159 1.5778 42 1 3.3139 5.0523 -0.0115 43 1 2.5532 4.0098 -2.1066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354562155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:31 Heat of formation + Delta-G solvation = -78.231816 kcal Electronic energy + Delta-G solvation = -27488.616213 eV Core-core repulsion = 23448.961839 eV Total energy + Delta-G solvation = -4039.654374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.81391 -40.70739 -39.28349 -37.80494 -35.94612 -34.75598 -33.62197 -32.60755 -30.74900 -30.05549 -28.88259 -27.73928 -25.05357 -24.20783 -22.88090 -22.65975 -22.14061 -20.49207 -19.36097 -17.60553 -17.41698 -17.10518 -16.85552 -16.30913 -16.04594 -15.60289 -15.21747 -14.95885 -14.48878 -14.22877 -14.00628 -13.86094 -13.78113 -13.55203 -13.30281 -13.21407 -12.83530 -12.74234 -12.52069 -12.24094 -12.06215 -11.89756 -11.85844 -11.79348 -11.16471 -11.09254 -10.92209 -10.78092 -10.71675 -10.48391 -10.22723 -9.96338 -9.54971 -8.99198 -8.78689 -8.54658 -8.04288 -7.90108 -6.07727 -4.04852 1.06634 1.22721 2.00952 2.72259 3.28315 3.32802 3.35889 3.49774 3.82150 3.92357 4.30983 4.39967 4.53629 4.70649 4.80734 5.00049 5.19035 5.23105 5.25512 5.33509 5.39014 5.40698 5.55510 5.56965 5.67064 5.74281 5.83400 5.89383 6.05125 6.10236 6.14537 6.20378 6.26837 6.28659 6.40175 6.42122 6.48446 6.78180 6.97409 7.07825 7.37883 7.54199 7.81750 8.14658 8.42799 8.54293 8.92709 9.52192 11.05895 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.004159 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.524260 B = 6730.169547 C = 8073.108634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.118 4.118 5 C 0.156 3.844 6 N -0.662 5.662 7 C 0.489 3.511 8 O -0.431 6.431 9 C 0.511 3.489 10 O -0.555 6.555 11 N -0.554 5.554 12 C 0.110 3.890 13 C -0.165 4.165 14 C 0.202 3.798 15 C -0.513 4.513 16 H 0.072 0.928 17 C 0.080 3.920 18 N -0.897 5.897 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.267 1.267 23 C -0.096 4.096 24 C -0.127 4.127 25 C 0.076 3.924 26 F -0.142 7.142 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.418 0.582 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.144 0.856 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -12.465 -2.524 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.139 4.139 5 C 0.061 3.939 6 N -0.311 5.311 7 C 0.271 3.729 8 O -0.298 6.298 9 C 0.293 3.707 10 O -0.436 6.436 11 N -0.284 5.284 12 C -0.012 4.012 13 C -0.223 4.223 14 C 0.082 3.918 15 C -0.551 4.551 16 H 0.090 0.910 17 C -0.122 4.122 18 N -0.535 5.535 19 Si 0.700 3.300 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.116 4.116 24 C -0.146 4.146 25 C 0.056 3.944 26 F -0.120 7.120 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.648 -12.129 -2.748 15.147 hybrid contribution 0.226 0.347 -0.668 0.786 sum 8.874 -11.781 -3.416 15.140 Atomic orbital electron populations 1.21753 0.94388 1.01813 1.02675 1.20452 0.96568 0.91606 1.03119 1.19631 1.01476 0.97150 0.91671 1.20648 1.00706 0.94651 0.97872 1.17690 0.97765 0.92616 0.85840 1.43240 1.58868 1.10237 1.18746 1.20430 0.82016 0.82228 0.88267 1.90996 1.32379 1.61527 1.44939 1.19702 0.80816 0.83496 0.86686 1.90664 1.44280 1.63748 1.44858 1.47948 1.56891 1.05727 1.17865 1.21477 0.95180 0.98440 0.86116 1.22118 0.96896 1.01313 1.01950 1.20241 0.95600 0.90133 0.85856 1.21049 0.88242 1.30943 1.14887 0.90988 1.24723 0.94541 0.96086 0.96872 1.69882 1.04318 1.42246 1.37069 0.86910 0.79681 0.79877 0.83500 1.19851 1.21280 1.19233 1.21035 0.99702 1.00993 0.89914 1.20995 1.00686 0.93342 0.99617 1.17456 1.02876 0.92355 0.81673 1.91450 1.88143 1.84875 1.47577 0.92207 0.92383 0.92249 0.90547 0.90741 0.84696 0.74514 0.89599 0.90201 0.91783 0.92588 0.92417 0.95063 0.93218 0.92639 0.83868 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.08 -0.78 5.78 -27.88 -0.16 -0.94 16 3 C -0.10 -1.20 5.14 -104.58 -0.54 -1.74 16 4 C -0.12 -1.48 9.59 -39.38 -0.38 -1.86 16 5 C 0.16 2.31 6.24 -83.72 -0.52 1.79 16 6 N -0.66 -10.15 5.32 -10.28 -0.05 -10.20 16 7 C 0.49 9.40 7.42 -11.63 -0.09 9.31 16 8 O -0.43 -9.70 9.96 5.47 0.05 -9.64 16 9 C 0.51 10.05 7.68 -11.63 -0.09 9.97 16 10 O -0.55 -10.82 16.05 5.49 0.09 -10.73 16 11 N -0.55 -11.12 2.47 -175.61 -0.43 -11.55 16 12 C 0.11 1.84 6.12 -4.04 -0.02 1.81 16 13 C -0.16 -2.26 10.24 37.15 0.38 -1.88 16 14 C 0.20 4.59 3.84 -5.19 -0.02 4.57 16 15 C -0.51 -13.97 8.29 -34.44 -0.29 -14.25 16 16 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 18 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 19 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 23 C -0.10 -1.49 8.65 -39.38 -0.34 -1.83 16 24 C -0.13 -1.78 10.02 -39.54 -0.40 -2.18 16 25 C 0.08 1.04 7.24 -39.39 -0.29 0.75 16 26 F -0.14 -1.91 16.65 2.25 0.04 -1.88 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.61 8.00 -51.93 -0.42 0.20 16 31 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 32 H 0.14 1.36 8.04 -52.49 -0.42 0.94 16 33 H 0.42 5.39 8.30 -40.82 -0.34 5.05 16 34 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.08 1.30 7.37 -51.93 -0.38 0.92 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.69 7.09 -51.93 -0.37 0.32 16 40 H 0.05 1.16 5.35 -51.93 -0.28 0.88 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.14 2.39 6.54 -52.49 -0.34 2.05 16 43 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -31.81 364.25 -7.12 -38.94 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.93 Total: 5.03 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.48 Total: 4.59 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.29 Total: -48.15 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.14 Total: -20.38 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.81 -7.12 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354562155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.297 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds