Wall clock time and date at job start Tue Mar 31 2020 12:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47304 * 2 1 4 4 C 1.38112 * 119.97233 * 99.72315 * 3 2 1 5 5 C 1.38896 * 119.94813 * 179.72622 * 4 3 2 6 6 N 1.39807 * 120.05011 * 180.29626 * 5 4 3 7 7 C 1.34784 * 119.99804 * 215.41798 * 6 5 4 8 8 O 1.21385 * 120.00107 * 5.00123 * 7 6 5 9 9 C 1.49345 * 119.99716 * 185.00418 * 7 6 5 10 10 O 1.21361 * 120.00370 * 354.43372 * 9 7 6 11 11 N 1.34781 * 119.99723 * 174.43847 * 9 7 6 12 12 C 1.46503 * 119.99889 * 174.63026 * 11 9 7 13 13 C 1.52994 * 109.47039 * 94.46234 * 12 11 9 14 14 C 1.46499 * 119.99987 * 354.62966 * 11 9 7 15 15 C 1.50700 * 109.47042 * 84.95596 * 14 11 9 16 16 H 1.07995 * 120.00035 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99471 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99625 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00226 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47285 * 90.00241 * 19 17 15 21 21 H 1.48505 * 109.46744 * 209.99617 * 19 17 15 22 22 H 1.48499 * 109.47263 * 329.99349 * 19 17 15 23 23 C 1.38942 * 119.89909 * 0.55422 * 5 4 3 24 24 C 1.38072 * 119.94489 * 359.72276 * 23 5 4 25 25 C 1.38464 * 119.97482 * 280.00265 * 3 2 1 26 26 F 1.35097 * 119.95521 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.46737 * 300.00253 * 1 2 3 28 28 H 1.09005 * 109.46916 * 59.99664 * 1 2 3 29 29 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46889 * 120.00291 * 2 1 3 31 31 H 1.09003 * 109.47194 * 240.00020 * 2 1 3 32 32 H 1.08001 * 120.02748 * 0.02562 * 4 3 2 33 33 H 0.96993 * 120.00314 * 35.41437 * 6 5 4 34 34 H 1.09001 * 109.46811 * 214.46556 * 12 11 9 35 35 H 1.09004 * 109.46961 * 334.46676 * 12 11 9 36 36 H 1.09005 * 109.47155 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47614 * 300.00340 * 13 12 11 38 38 H 1.09004 * 109.46883 * 60.00394 * 13 12 11 39 39 H 1.09002 * 109.46997 * 204.95217 * 14 11 9 40 40 H 1.08997 * 109.46937 * 324.95087 * 14 11 9 41 41 H 0.96998 * 120.00316 * 180.02562 * 18 17 15 42 42 H 1.07989 * 120.02482 * 179.70442 * 23 5 4 43 43 H 1.07996 * 119.96982 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4530 2.0040 1.1792 5 6 2.9212 3.3116 1.1777 6 7 3.3533 3.9019 2.3691 7 6 3.1346 5.2136 2.5893 8 8 2.4839 5.8620 1.7958 9 6 3.6929 5.8691 3.8095 10 8 4.2563 5.2024 4.6526 11 7 3.5709 7.2012 3.9744 12 6 4.0125 7.8283 5.2226 13 6 5.4464 8.3362 5.0587 14 6 2.9967 8.0221 2.9054 15 6 1.4940 8.0151 3.0188 16 1 1.0146 7.4549 3.8079 17 6 0.7312 8.7240 2.1151 18 7 -0.5802 8.7175 2.2137 19 14 1.5604 9.6924 0.7498 20 1 1.7220 8.8250 -0.4446 21 1 0.7238 10.8679 0.3983 22 1 2.8945 10.1543 1.2104 23 6 2.9546 4.0339 -0.0088 24 6 2.5278 3.4486 -1.1842 25 6 2.0667 2.1425 -1.1812 26 9 1.6490 1.5722 -2.3325 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.4223 1.4420 2.1010 33 1 3.8103 3.3676 3.0372 34 1 3.3557 8.6648 5.4612 35 1 3.9764 7.0963 6.0295 36 1 5.7748 8.8031 5.9873 37 1 6.1032 7.4997 4.8201 38 1 5.4825 9.0681 4.2518 39 1 3.3631 9.0447 2.9960 40 1 3.2900 7.6154 1.9377 41 1 -1.1169 9.2159 1.5778 42 1 3.3139 5.0523 -0.0115 43 1 2.5532 4.0098 -2.1066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354562155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:31 Heat of formation + Delta-G solvation = -97.593315 kcal Electronic energy + Delta-G solvation = -27489.455791 eV Core-core repulsion = 23448.961839 eV Total energy + Delta-G solvation = -4040.493951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89749 -42.13796 -40.58135 -39.19744 -37.48797 -35.99358 -34.70008 -34.63841 -32.21495 -31.11093 -30.02919 -29.55725 -26.43907 -25.16275 -24.62357 -23.94600 -23.33728 -21.67926 -20.76728 -19.12051 -19.00476 -18.56703 -18.28397 -17.54484 -17.46168 -16.82372 -16.63182 -16.50385 -16.00122 -15.58250 -15.19217 -15.14005 -14.86678 -14.72677 -14.68386 -14.40801 -14.35137 -14.06395 -13.82849 -13.68893 -13.45218 -13.23490 -13.04879 -12.78924 -12.68454 -12.57577 -12.26552 -12.08879 -11.96846 -11.87477 -11.82580 -11.65893 -11.23062 -10.73281 -10.38270 -9.95874 -9.66005 -9.11592 -8.24292 -6.25231 -0.13631 0.16083 0.54679 1.31279 1.38189 1.41024 1.46976 2.12328 2.37841 2.48543 2.57214 3.13511 3.24860 3.32410 3.59240 3.72926 4.08466 4.13723 4.16622 4.28025 4.33252 4.42779 4.46678 4.48782 4.60206 4.68107 4.85740 4.91628 4.92430 4.93190 5.00513 5.02348 5.12081 5.14889 5.24523 5.30975 5.33581 5.38901 5.46016 5.51574 5.85717 6.03527 6.10686 6.37649 6.70857 6.73359 7.00606 7.35838 8.93119 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.004159 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.524260 B = 6730.169547 C = 8073.108634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.094 4.094 4 C -0.108 4.108 5 C 0.135 3.865 6 N -0.642 5.642 7 C 0.489 3.511 8 O -0.474 6.474 9 C 0.508 3.492 10 O -0.553 6.553 11 N -0.562 5.562 12 C 0.102 3.898 13 C -0.154 4.154 14 C 0.214 3.786 15 C -0.503 4.503 16 H 0.025 0.975 17 C 0.020 3.980 18 N -0.950 5.950 19 Si 0.936 3.064 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.235 1.235 23 C -0.114 4.114 24 C -0.134 4.134 25 C 0.071 3.929 26 F -0.141 7.141 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.430 0.570 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.126 0.874 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -13.521 -2.565 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.096 4.096 4 C -0.128 4.128 5 C 0.041 3.959 6 N -0.292 5.292 7 C 0.271 3.729 8 O -0.344 6.344 9 C 0.290 3.710 10 O -0.433 6.433 11 N -0.292 5.292 12 C -0.019 4.019 13 C -0.212 4.212 14 C 0.093 3.907 15 C -0.542 4.542 16 H 0.043 0.957 17 C -0.177 4.177 18 N -0.591 5.591 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.158 1.158 23 C -0.134 4.134 24 C -0.154 4.154 25 C 0.051 3.949 26 F -0.120 7.120 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.270 0.730 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.545 -13.229 -2.752 17.140 hybrid contribution -0.381 0.500 -0.594 0.865 sum 10.164 -12.729 -3.346 16.629 Atomic orbital electron populations 1.21759 0.94443 1.02907 1.01540 1.20560 0.96359 0.89888 1.04798 1.19988 1.00267 0.98419 0.90909 1.20931 0.99089 0.93574 0.99165 1.17891 0.99188 0.93648 0.85210 1.43043 1.57930 1.09035 1.19165 1.20466 0.81540 0.83261 0.87675 1.90978 1.34577 1.62721 1.46140 1.19842 0.80738 0.83533 0.86903 1.90653 1.44250 1.63584 1.44860 1.48004 1.56958 1.05855 1.18421 1.21735 0.97090 0.98349 0.84737 1.22041 0.94424 1.01162 1.03557 1.19937 0.92567 0.91314 0.86923 1.21187 0.90747 1.29222 1.13026 0.95710 1.25597 0.94972 0.97536 0.99611 1.70046 1.06238 1.44184 1.38636 0.85888 0.80073 0.78150 0.79858 1.20151 1.21088 1.15807 1.20986 1.00897 1.00542 0.90994 1.21109 1.00692 0.93911 0.99649 1.17624 1.02729 0.92332 0.82244 1.91452 1.88105 1.84771 1.47649 0.92946 0.93921 0.90102 0.88057 0.89929 0.81763 0.73045 0.89736 0.90042 0.88816 0.92983 0.92364 0.93394 0.93145 0.92753 0.85649 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.89 71.98 0.71 -1.88 16 2 C -0.08 -1.31 5.78 29.85 0.17 -1.13 16 3 C -0.09 -2.14 5.14 -19.84 -0.10 -2.24 16 4 C -0.11 -2.48 9.59 22.40 0.21 -2.26 16 5 C 0.13 3.92 6.24 38.20 0.24 4.16 16 6 N -0.64 -19.35 5.32 -304.78 -1.62 -20.97 16 7 C 0.49 18.94 7.42 87.24 0.65 19.58 16 8 O -0.47 -21.85 9.96 -3.35 -0.03 -21.88 16 9 C 0.51 19.83 7.68 87.24 0.67 20.50 16 10 O -0.55 -20.98 16.05 -3.28 -0.05 -21.03 16 11 N -0.56 -22.32 2.47 -827.85 -2.04 -24.36 16 12 C 0.10 3.28 6.12 86.38 0.53 3.81 16 13 C -0.15 -3.85 10.24 71.98 0.74 -3.11 16 14 C 0.21 9.63 3.84 85.63 0.33 9.96 16 15 C -0.50 -28.09 8.29 25.60 0.21 -27.88 16 16 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 17 C 0.02 1.16 5.47 84.66 0.46 1.62 16 18 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 19 Si 0.94 43.43 27.47 68.60 1.88 45.32 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 23 C -0.11 -3.59 8.65 22.40 0.19 -3.40 16 24 C -0.13 -3.77 10.02 22.30 0.22 -3.55 16 25 C 0.07 1.85 7.24 22.39 0.16 2.01 16 26 F -0.14 -3.65 16.65 44.97 0.75 -2.90 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.21 8.00 -2.39 -0.02 1.19 16 31 H 0.08 1.28 7.94 -2.39 -0.02 1.26 16 32 H 0.16 2.76 8.04 -2.91 -0.02 2.74 16 33 H 0.43 10.52 8.30 -92.71 -0.77 9.76 16 34 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 35 H 0.08 2.57 7.37 -2.38 -0.02 2.55 16 36 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.05 2.02 7.09 -2.39 -0.02 2.00 16 40 H 0.05 2.32 5.35 -2.39 -0.01 2.31 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.13 4.38 6.54 -2.92 -0.02 4.36 16 43 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -70.88 364.25 4.80 -66.09 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.21 Total: 22.82 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 5.40 Total: 16.19 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.37 Total: -104.61 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.09 Total: -42.91 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.75 Total: -2.90 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Total: -70.88 4.80 -66.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354562155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds