Wall clock time and date at job start Tue Mar 31 2020 13:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81405 * 102.99979 * 2 1 4 4 C 1.50696 * 109.47332 * 179.97438 * 3 2 1 5 5 C 1.38628 * 120.47311 * 263.14455 * 4 3 2 6 6 C 1.38578 * 118.49521 * 180.02562 * 5 4 3 7 7 C 1.38603 * 119.34832 * 359.97438 * 6 5 4 8 8 N 1.31494 * 120.90291 * 359.97438 * 7 6 5 9 9 C 1.32753 * 121.63988 * 0.02562 * 8 7 6 10 10 C 1.48169 * 119.71886 * 179.97438 * 9 8 7 11 11 O 1.21517 * 119.99834 * 174.37170 * 10 9 8 12 12 N 1.34777 * 120.00280 * 354.36658 * 10 9 8 13 13 C 1.46503 * 119.99700 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46736 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46850 * 299.99842 * 14 13 12 16 16 C 1.53006 * 109.47163 * 59.99729 * 14 13 12 17 17 C 1.52999 * 109.47064 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47023 * 180.02562 * 17 14 13 19 19 H 1.07996 * 120.00404 * 359.97438 * 18 17 14 20 20 C 1.37883 * 119.99628 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99339 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00270 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46788 * 90.00420 * 22 20 18 24 24 H 1.48498 * 109.47137 * 210.00066 * 22 20 18 25 25 H 1.48494 * 109.47078 * 330.00523 * 22 20 18 26 26 H 1.09001 * 109.47268 * 299.99884 * 1 2 3 27 27 H 1.08998 * 109.47430 * 59.99935 * 1 2 3 28 28 H 1.09005 * 109.46744 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46724 * 59.99683 * 3 2 1 30 30 H 1.09000 * 109.46953 * 299.99997 * 3 2 1 31 31 H 1.08007 * 120.75037 * 0.02562 * 5 4 3 32 32 H 1.07995 * 120.33066 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.54990 * 180.28107 * 7 6 5 34 34 H 0.96997 * 119.99760 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46720 * 299.99710 * 13 12 10 36 36 H 1.08991 * 109.47581 * 60.00201 * 13 12 10 37 37 H 1.09004 * 109.47339 * 60.00528 * 15 14 13 38 38 H 1.09006 * 109.46550 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.47510 * 299.99893 * 15 14 13 40 40 H 1.09007 * 109.46828 * 59.99937 * 16 14 13 41 41 H 1.08997 * 109.46813 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.47248 * 300.00250 * 16 14 13 43 43 H 1.09006 * 109.46590 * 300.00156 * 17 14 13 44 44 H 1.08997 * 109.47277 * 59.99483 * 17 14 13 45 45 H 0.97003 * 119.99069 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 0.0006 5 6 4.4013 2.1585 1.1872 6 6 5.7780 2.3095 1.1402 7 6 6.4283 2.2353 -0.0816 8 7 5.7569 2.0235 -1.1922 9 6 4.4378 1.8735 -1.1907 10 6 3.7240 1.6373 -2.4674 11 8 2.5327 1.3977 -2.4620 12 7 4.3958 1.6883 -3.6346 13 6 3.6898 1.4553 -4.8970 14 6 4.6759 1.5690 -6.0613 15 6 5.2922 2.9692 -6.0727 16 6 5.7829 0.5258 -5.8959 17 6 3.9387 1.3250 -7.3796 18 6 4.9100 1.4364 -8.5264 19 1 5.9491 1.6593 -8.3342 20 6 4.4719 1.2546 -9.8210 21 7 5.3195 1.3524 -10.8218 22 14 2.6744 0.8697 -10.1535 23 1 1.9234 2.1370 -10.3408 24 1 2.5643 0.0429 -11.3820 25 1 2.1068 0.1235 -9.0019 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8030 2.2371 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 3.8716 2.2119 2.1269 32 1 6.3389 2.4826 2.0467 33 1 7.5017 2.3479 -0.1214 34 1 5.3468 1.8793 -3.6389 35 1 3.2510 0.4575 -4.8890 36 1 2.9009 2.1981 -5.0146 37 1 5.8176 3.1426 -5.1334 38 1 5.9951 3.0501 -6.9019 39 1 4.5037 3.7125 -6.1905 40 1 5.3436 -0.4719 -5.8878 41 1 6.4850 0.6065 -6.7256 42 1 6.3081 0.6991 -4.9567 43 1 3.4998 0.3272 -7.3712 44 1 3.1498 2.0678 -7.4977 45 1 5.0113 1.2242 -11.7326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355364732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:36 Heat of formation + Delta-G solvation = -8.651634 kcal Electronic energy + Delta-G solvation = -24936.264511 eV Core-core repulsion = 21465.840537 eV Total energy + Delta-G solvation = -3470.423975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94294 -39.05861 -37.17578 -34.32676 -33.28359 -32.40108 -31.90518 -29.19061 -28.09518 -27.59398 -26.48532 -26.31875 -24.53476 -22.77135 -22.20877 -20.56411 -18.71963 -17.55102 -17.07466 -16.79495 -16.45783 -15.88790 -15.55311 -15.31577 -14.86327 -14.36444 -14.16575 -14.00569 -13.77816 -13.64779 -13.46363 -13.40198 -13.32536 -12.91179 -12.82379 -12.62967 -12.26369 -12.20852 -12.11519 -11.20028 -11.06311 -10.96443 -10.57604 -10.45043 -10.41960 -10.17836 -10.00939 -9.92083 -9.75245 -9.65877 -9.35469 -9.29422 -8.95535 -8.71587 -8.50625 -7.57282 -6.01366 -3.98233 0.32631 0.74243 1.80553 2.50233 2.76755 3.25016 3.33449 3.41434 3.45730 3.70530 3.96660 4.33951 4.37143 4.48238 4.56658 4.65783 4.95793 4.98072 5.04464 5.12858 5.23152 5.31489 5.43314 5.54186 5.57692 5.58106 5.66310 5.71261 5.80212 6.16402 6.19059 6.20493 6.26455 6.39579 6.54612 6.66015 6.75785 6.95813 7.07081 7.10502 7.24238 7.40663 7.40992 7.76363 7.84134 8.34734 8.56606 9.03366 9.61453 11.11467 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.003124 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.127613 B = 8960.023261 C =10327.028356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.233 6.233 3 C -0.050 4.050 4 C -0.070 4.070 5 C -0.069 4.069 6 C -0.153 4.153 7 C 0.101 3.899 8 N -0.455 5.455 9 C 0.099 3.901 10 C 0.558 3.442 11 O -0.520 6.520 12 N -0.699 5.699 13 C 0.125 3.875 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.001 4.001 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.018 0.982 44 H 0.013 0.987 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 2.312 27.601 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.005 6.005 3 C -0.198 4.198 4 C -0.074 4.074 5 C -0.096 4.096 6 C -0.173 4.173 7 C -0.059 4.059 8 N -0.166 5.166 9 C -0.041 4.041 10 C 0.342 3.658 11 O -0.397 6.397 12 N -0.350 5.350 13 C 0.002 3.998 14 C -0.063 4.063 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.039 4.039 18 C -0.547 4.547 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.247 0.753 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.031 0.969 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.479 1.170 26.544 26.685 hybrid contribution -1.687 0.972 0.511 2.013 sum -4.167 2.142 27.054 27.457 Atomic orbital electron populations 1.23349 0.94619 1.06255 1.04782 1.86819 1.06930 1.09033 1.97742 1.22501 0.93872 0.96716 1.06686 1.20172 0.95326 0.98676 0.93230 1.21510 0.94394 0.96007 0.97730 1.22347 0.94977 0.99992 0.99969 1.22879 1.00648 0.94999 0.87410 1.67645 1.07419 1.09937 1.31606 1.21180 0.89883 0.99092 0.93971 1.17814 0.86536 0.78431 0.83050 1.90743 1.14119 1.48342 1.86454 1.46024 1.13702 1.69675 1.05598 1.21700 0.95202 1.01280 0.81571 1.20689 0.95144 0.95940 0.94536 1.21781 1.00814 0.95582 1.00487 1.21779 0.98542 0.97973 1.00381 1.19588 0.96008 0.96412 0.91913 1.21093 0.96564 1.47823 0.89266 0.90356 1.25001 0.97183 0.94938 0.96339 1.69910 1.34569 1.50742 0.99152 0.86858 0.86288 0.78756 0.77879 1.20422 1.21535 1.18965 0.90973 0.90129 0.88297 0.90070 0.85982 0.84035 0.84030 0.81817 0.75344 0.91527 0.91713 0.94831 0.90879 0.93505 0.93429 0.90902 0.94741 0.96349 0.96862 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.76 101.05 1.09 -0.03 16 2 S -0.23 -2.87 21.16 -107.50 -2.27 -5.14 16 3 C -0.05 -0.55 5.25 36.00 0.19 -0.36 16 4 C -0.07 -0.78 5.19 -104.10 -0.54 -1.32 16 5 C -0.07 -0.56 9.83 -39.31 -0.39 -0.95 16 6 C -0.15 -1.07 10.11 -39.32 -0.40 -1.46 16 7 C 0.10 0.88 11.18 -17.56 -0.20 0.68 16 8 N -0.46 -5.50 9.56 -9.80 -0.09 -5.60 16 9 C 0.10 1.31 6.75 -83.01 -0.56 0.75 16 10 C 0.56 8.63 7.75 -12.18 -0.09 8.54 16 11 O -0.52 -8.80 12.26 5.35 0.07 -8.74 16 12 N -0.70 -10.77 4.95 -61.14 -0.30 -11.07 16 13 C 0.13 2.16 4.56 -4.04 -0.02 2.14 16 14 C -0.06 -1.18 0.54 -154.50 -0.08 -1.26 16 15 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 16 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 17 C 0.00 -0.03 3.11 -27.89 -0.09 -0.12 16 18 C -0.51 -13.78 8.20 -34.44 -0.28 -14.06 16 19 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 20 C 0.07 1.89 5.47 -17.81 -0.10 1.79 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 22 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 26 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.08 0.67 8.05 -51.92 -0.42 0.25 16 30 H 0.12 1.56 5.86 -51.92 -0.30 1.26 16 31 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.41 5.97 5.51 -40.82 -0.22 5.74 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 38 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 41 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 42 H 0.03 0.54 6.86 -51.93 -0.36 0.18 16 43 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 44 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -31.91 371.45 -8.59 -40.50 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.82 Total: 3.90 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.87 Total: -9.75 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.38 Total: -43.34 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.27 Total: -5.14 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.91 -8.59 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355364732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.846 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds