Wall clock time and date at job start Tue Mar 31 2020 13:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81405 * 102.99979 * 2 1 4 4 C 1.50696 * 109.47332 * 179.97438 * 3 2 1 5 5 C 1.38628 * 120.47311 * 263.14455 * 4 3 2 6 6 C 1.38578 * 118.49521 * 180.02562 * 5 4 3 7 7 C 1.38603 * 119.34832 * 359.97438 * 6 5 4 8 8 N 1.31494 * 120.90291 * 359.97438 * 7 6 5 9 9 C 1.32753 * 121.63988 * 0.02562 * 8 7 6 10 10 C 1.48169 * 119.71886 * 179.97438 * 9 8 7 11 11 O 1.21517 * 119.99834 * 174.37170 * 10 9 8 12 12 N 1.34777 * 120.00280 * 354.36658 * 10 9 8 13 13 C 1.46503 * 119.99700 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46736 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46850 * 299.99842 * 14 13 12 16 16 C 1.53006 * 109.47163 * 59.99729 * 14 13 12 17 17 C 1.52999 * 109.47064 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47023 * 180.02562 * 17 14 13 19 19 H 1.07996 * 120.00404 * 359.97438 * 18 17 14 20 20 C 1.37883 * 119.99628 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99339 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00270 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46788 * 90.00420 * 22 20 18 24 24 H 1.48498 * 109.47137 * 210.00066 * 22 20 18 25 25 H 1.48494 * 109.47078 * 330.00523 * 22 20 18 26 26 H 1.09001 * 109.47268 * 299.99884 * 1 2 3 27 27 H 1.08998 * 109.47430 * 59.99935 * 1 2 3 28 28 H 1.09005 * 109.46744 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46724 * 59.99683 * 3 2 1 30 30 H 1.09000 * 109.46953 * 299.99997 * 3 2 1 31 31 H 1.08007 * 120.75037 * 0.02562 * 5 4 3 32 32 H 1.07995 * 120.33066 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.54990 * 180.28107 * 7 6 5 34 34 H 0.96997 * 119.99760 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46720 * 299.99710 * 13 12 10 36 36 H 1.08991 * 109.47581 * 60.00201 * 13 12 10 37 37 H 1.09004 * 109.47339 * 60.00528 * 15 14 13 38 38 H 1.09006 * 109.46550 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.47510 * 299.99893 * 15 14 13 40 40 H 1.09007 * 109.46828 * 59.99937 * 16 14 13 41 41 H 1.08997 * 109.46813 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.47248 * 300.00250 * 16 14 13 43 43 H 1.09006 * 109.46590 * 300.00156 * 17 14 13 44 44 H 1.08997 * 109.47277 * 59.99483 * 17 14 13 45 45 H 0.97003 * 119.99069 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 0.0006 5 6 4.4013 2.1585 1.1872 6 6 5.7780 2.3095 1.1402 7 6 6.4283 2.2353 -0.0816 8 7 5.7569 2.0235 -1.1922 9 6 4.4378 1.8735 -1.1907 10 6 3.7240 1.6373 -2.4674 11 8 2.5327 1.3977 -2.4620 12 7 4.3958 1.6883 -3.6346 13 6 3.6898 1.4553 -4.8970 14 6 4.6759 1.5690 -6.0613 15 6 5.2922 2.9692 -6.0727 16 6 5.7829 0.5258 -5.8959 17 6 3.9387 1.3250 -7.3796 18 6 4.9100 1.4364 -8.5264 19 1 5.9491 1.6593 -8.3342 20 6 4.4719 1.2546 -9.8210 21 7 5.3195 1.3524 -10.8218 22 14 2.6744 0.8697 -10.1535 23 1 1.9234 2.1370 -10.3408 24 1 2.5643 0.0429 -11.3820 25 1 2.1068 0.1235 -9.0019 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8030 2.2371 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 3.8716 2.2119 2.1269 32 1 6.3389 2.4826 2.0467 33 1 7.5017 2.3479 -0.1214 34 1 5.3468 1.8793 -3.6389 35 1 3.2510 0.4575 -4.8890 36 1 2.9009 2.1981 -5.0146 37 1 5.8176 3.1426 -5.1334 38 1 5.9951 3.0501 -6.9019 39 1 4.5037 3.7125 -6.1905 40 1 5.3436 -0.4719 -5.8878 41 1 6.4850 0.6065 -6.7256 42 1 6.3081 0.6991 -4.9567 43 1 3.4998 0.3272 -7.3712 44 1 3.1498 2.0678 -7.4977 45 1 5.0113 1.2242 -11.7326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355364732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:35 Heat of formation + Delta-G solvation = -28.279863 kcal Electronic energy + Delta-G solvation = -24937.115655 eV Core-core repulsion = 21465.840537 eV Total energy + Delta-G solvation = -3471.275119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80177 -40.17350 -38.63286 -35.47280 -34.58361 -33.87303 -32.95975 -29.96745 -29.74963 -28.70103 -28.00847 -27.54407 -25.53739 -24.25232 -23.21638 -21.71676 -20.05218 -18.93428 -18.74982 -17.84702 -17.32434 -16.83507 -16.60244 -16.39189 -16.17086 -15.79332 -15.49486 -15.20168 -14.85839 -14.81492 -14.53785 -14.39423 -14.21043 -14.19899 -14.05597 -13.82224 -13.60753 -13.55238 -12.93028 -12.86797 -12.79812 -12.61999 -12.31032 -12.17140 -11.76951 -11.52472 -11.27971 -11.21555 -11.03890 -10.92630 -10.72085 -10.70063 -10.42711 -10.19364 -9.85589 -8.49314 -8.21975 -6.22153 -0.45160 0.07589 1.03586 1.36132 1.38729 1.49286 1.71402 1.78816 2.14469 2.39596 2.89095 3.13338 3.17510 3.52803 3.70664 3.88638 3.94523 4.01631 4.04792 4.15613 4.33120 4.33452 4.35994 4.42907 4.54425 4.63578 4.70265 4.73969 4.79130 4.87209 4.93899 5.00374 5.06849 5.07832 5.14003 5.28756 5.36387 5.39448 5.47911 5.54977 5.61654 5.66935 5.75890 6.38422 6.47374 6.81906 6.84606 7.20196 7.40397 8.93783 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.003124 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.127613 B = 8960.023261 C =10327.028356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.292 6.292 3 C -0.037 4.037 4 C -0.081 4.081 5 C -0.068 4.068 6 C -0.132 4.132 7 C 0.092 3.908 8 N -0.480 5.480 9 C 0.068 3.932 10 C 0.553 3.447 11 O -0.542 6.542 12 N -0.698 5.698 13 C 0.140 3.860 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.001 4.001 18 C -0.503 4.503 19 H 0.051 0.949 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.935 3.065 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.252 1.252 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.413 0.587 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 2.827 31.279 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.064 6.064 3 C -0.184 4.184 4 C -0.085 4.085 5 C -0.095 4.095 6 C -0.151 4.151 7 C -0.068 4.068 8 N -0.191 5.191 9 C -0.071 4.071 10 C 0.339 3.661 11 O -0.420 6.420 12 N -0.350 5.350 13 C 0.016 3.984 14 C -0.058 4.058 15 C -0.179 4.179 16 C -0.180 4.180 17 C -0.039 4.039 18 C -0.541 4.541 19 H 0.069 0.931 20 C -0.191 4.191 21 N -0.593 5.593 22 Si 0.760 3.240 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.176 1.176 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.190 0.810 32 H 0.202 0.798 33 H 0.210 0.790 34 H 0.251 0.749 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.921 1.689 30.245 30.433 hybrid contribution -1.431 0.848 -0.496 1.736 sum -4.352 2.536 29.749 30.173 Atomic orbital electron populations 1.23362 0.91782 1.07058 1.05444 1.86948 1.10256 1.11418 1.97825 1.22412 0.94187 0.94989 1.06800 1.20334 0.95362 0.99053 0.93769 1.21918 0.95132 0.94806 0.97677 1.22824 0.94637 0.96827 1.00833 1.23510 1.02000 0.94048 0.87266 1.67566 1.07011 1.10921 1.33615 1.20844 0.90683 1.02287 0.93249 1.18282 0.86486 0.77559 0.83796 1.90729 1.15121 1.49141 1.86982 1.45887 1.13746 1.70256 1.05085 1.21336 0.94512 1.00662 0.81884 1.20556 0.95322 0.96673 0.93282 1.21684 1.00376 0.94981 1.00905 1.21686 0.97929 0.97647 1.00725 1.19544 0.95458 0.96172 0.92708 1.21367 0.96212 1.45979 0.90524 0.93083 1.25840 1.01520 0.95355 0.96342 1.70051 1.36747 1.52906 0.99626 0.85878 0.81168 0.78920 0.78017 1.19586 1.21435 1.17551 0.88648 0.91037 0.87456 0.87257 0.88357 0.80992 0.79828 0.78952 0.74875 0.92478 0.92061 0.92016 0.93453 0.93434 0.93709 0.93415 0.92026 0.96648 0.96635 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.76 113.37 1.22 -0.64 16 2 S -0.29 -7.00 21.16 -56.49 -1.20 -8.19 16 3 C -0.04 -0.76 5.25 71.23 0.37 -0.38 16 4 C -0.08 -1.66 5.19 -19.52 -0.10 -1.76 16 5 C -0.07 -0.86 9.83 22.44 0.22 -0.64 16 6 C -0.13 -1.24 10.11 22.44 0.23 -1.02 16 7 C 0.09 1.29 11.18 84.83 0.95 2.24 16 8 N -0.48 -10.76 9.56 -184.90 -1.77 -12.53 16 9 C 0.07 1.74 6.75 41.89 0.28 2.02 16 10 C 0.55 17.08 7.75 86.88 0.67 17.75 16 11 O -0.54 -18.61 12.26 -3.77 -0.05 -18.65 16 12 N -0.70 -21.23 4.95 -465.65 -2.30 -23.53 16 13 C 0.14 4.78 4.56 86.38 0.39 5.18 16 14 C -0.06 -2.19 0.54 -52.18 -0.03 -2.21 16 15 C -0.12 -4.38 8.05 71.98 0.58 -3.80 16 16 C -0.12 -4.48 8.05 71.98 0.58 -3.90 16 17 C 0.00 -0.04 3.11 29.85 0.09 0.05 16 18 C -0.50 -27.88 8.20 25.60 0.21 -27.67 16 19 H 0.05 3.06 5.92 -2.91 -0.02 3.04 16 20 C 0.01 0.32 5.47 84.66 0.46 0.79 16 21 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 22 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 1.55 8.05 -2.39 -0.02 1.53 16 30 H 0.10 2.52 5.86 -2.39 -0.01 2.50 16 31 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 33 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.41 11.68 5.51 -92.71 -0.51 11.17 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16 38 H 0.05 1.93 6.62 -2.38 -0.02 1.92 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 42 H 0.06 1.89 6.86 -2.39 -0.02 1.87 16 43 H 0.02 0.72 7.20 -2.38 -0.02 0.70 16 44 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 45 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.34 371.45 3.43 -68.90 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.43 Total: 20.29 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 6.13 Total: -14.00 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -3.77 Total: -95.20 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.20 Total: -8.19 kcal Total: -72.34 3.43 -68.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355364732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.623 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds