Wall clock time and date at job start Tue Mar 31 2020 13:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47576 * 2 1 4 4 C 1.53001 * 109.47120 * 239.99464 * 2 1 3 5 5 C 1.50700 * 109.47028 * 60.00525 * 4 2 1 6 6 H 1.08003 * 119.99629 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00287 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00022 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00414 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46978 * 60.00141 * 9 7 5 11 11 H 1.48496 * 109.47176 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46915 * 300.00636 * 9 7 5 13 13 C 1.53007 * 109.46788 * 120.00144 * 2 1 3 14 14 N 1.46503 * 109.46688 * 299.99517 * 13 2 1 15 15 C 1.34775 * 119.99785 * 180.02562 * 14 13 2 16 16 O 1.21366 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.49343 * 120.00181 * 180.02562 * 15 14 13 18 18 O 1.21386 * 120.00030 * 0.02562 * 17 15 14 19 19 N 1.34775 * 120.00181 * 180.02562 * 17 15 14 20 20 C 1.39810 * 120.00190 * 185.27378 * 19 17 15 21 21 C 1.38921 * 120.05286 * 213.62061 * 20 19 17 22 22 C 1.38085 * 119.94477 * 180.25344 * 21 20 19 23 23 C 1.38496 * 120.05465 * 359.49395 * 22 21 20 24 24 F 1.35099 * 119.95168 * 180.25175 * 23 22 21 25 25 C 1.38489 * 120.09827 * 0.23319 * 23 22 21 26 26 C 1.38084 * 120.05325 * 0.02562 * 25 23 22 27 27 H 1.09008 * 109.47189 * 300.00614 * 1 2 3 28 28 H 1.09002 * 109.47061 * 59.99932 * 1 2 3 29 29 H 1.09000 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47546 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46981 * 300.00117 * 3 2 1 32 32 H 1.09008 * 109.47363 * 59.99492 * 3 2 1 33 33 H 1.08998 * 109.47014 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47084 * 300.00480 * 4 2 1 35 35 H 0.96997 * 120.00202 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46924 * 180.02562 * 13 2 1 37 37 H 1.08992 * 109.47657 * 59.99742 * 13 2 1 38 38 H 0.96995 * 120.00366 * 0.02562 * 14 13 2 39 39 H 0.97006 * 119.99799 * 5.28197 * 19 17 15 40 40 H 1.07992 * 120.02259 * 0.02562 * 21 20 19 41 41 H 1.08005 * 119.97138 * 179.77003 * 22 21 20 42 42 H 1.08000 * 119.97414 * 180.02562 * 25 23 22 43 43 H 1.08002 * 120.02854 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5511 -3.8525 9 14 1.2481 0.3984 -5.2572 10 1 1.7421 1.7987 -5.2572 11 1 1.7431 -0.3017 -6.4696 12 1 -0.2370 0.3975 -5.2572 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6695 16 8 2.5759 -1.4770 3.7810 17 6 1.3793 0.2130 4.8889 18 8 0.6803 1.1992 4.7775 19 7 1.7056 -0.2468 6.1130 20 6 1.1511 0.3438 7.2525 21 6 1.8932 0.4277 8.4238 22 6 1.3415 1.0068 9.5494 23 6 0.0531 1.5132 9.5082 24 9 -0.4829 2.0840 10.6092 25 6 -0.6865 1.4358 8.3399 26 6 -0.1409 0.8528 7.2134 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7218 -1.2489 34 1 1.6766 -1.7490 -1.2491 35 1 2.8616 -1.8825 -4.7335 36 1 3.1299 -0.7209 1.2496 37 1 1.6766 -1.7489 1.2494 38 1 0.9937 0.7579 2.3564 39 1 2.3254 -0.9876 6.2035 40 1 2.8995 0.0369 8.4551 41 1 1.9167 1.0689 10.4614 42 1 -1.6909 1.8318 8.3099 43 1 -0.7179 0.7930 6.3024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357992401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:43 Heat of formation + Delta-G solvation = -99.613083 kcal Electronic energy + Delta-G solvation = -26081.980450 eV Core-core repulsion = 22041.398915 eV Total energy + Delta-G solvation = -4040.581535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.20946 -41.29668 -39.65012 -38.36661 -37.27391 -35.27933 -33.71035 -32.14867 -31.60295 -29.80139 -27.42184 -26.82241 -26.57270 -24.81293 -23.72506 -22.99384 -22.01924 -20.47527 -19.38628 -18.30085 -17.92118 -17.58447 -16.78552 -16.44088 -16.35241 -15.95553 -15.89272 -15.25318 -14.85643 -14.59048 -14.53946 -14.11744 -13.98121 -13.70309 -13.48404 -13.25946 -13.20333 -12.89262 -12.84997 -12.25843 -12.10154 -11.88923 -11.52762 -11.24721 -11.04432 -10.90501 -10.72363 -10.68190 -10.50579 -10.32141 -9.95965 -9.88821 -9.54870 -9.25126 -9.06979 -9.00230 -8.51257 -8.39665 -6.03976 -4.05500 0.51148 0.78968 1.31605 2.08307 2.94769 3.24314 3.30073 3.35542 3.36681 3.43404 3.89061 4.24769 4.35362 4.41554 4.42602 4.76448 4.87299 5.04927 5.31377 5.33340 5.44717 5.49527 5.65953 5.67558 5.72259 5.78246 5.88880 6.06841 6.08432 6.12447 6.27275 6.29238 6.44235 6.57489 6.60421 6.67176 6.98023 7.00841 7.03550 7.21616 7.49394 7.57487 7.68772 7.89264 7.94154 8.35468 8.98731 9.57912 11.07323 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036465 B = 0.002025 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.676866 B =13823.100268 C =14315.203097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.124 3.876 14 N -0.683 5.683 15 C 0.502 3.498 16 O -0.523 6.523 17 C 0.510 3.490 18 O -0.498 6.498 19 N -0.648 5.648 20 C 0.137 3.863 21 C -0.112 4.112 22 C -0.133 4.133 23 C 0.082 3.918 24 F -0.140 7.140 25 C -0.131 4.131 26 C -0.092 4.092 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.425 0.575 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 3.948 25.148 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 C -0.188 4.188 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.002 3.998 14 N -0.335 5.335 15 C 0.281 3.719 16 O -0.400 6.400 17 C 0.292 3.708 18 O -0.371 6.371 19 N -0.295 5.295 20 C 0.042 3.958 21 C -0.133 4.133 22 C -0.152 4.152 23 C 0.063 3.937 24 F -0.119 7.119 25 C -0.151 4.151 26 C -0.112 4.112 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.250 0.750 39 H 0.264 0.736 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.114 3.825 24.936 25.419 hybrid contribution -0.291 0.510 -0.731 0.938 sum -3.405 4.335 24.205 24.825 Atomic orbital electron populations 1.21797 0.95049 1.01316 1.00590 1.20945 0.95701 0.95999 0.94697 1.21797 1.00622 0.95748 1.00596 1.19090 0.96402 0.95227 0.89318 1.21127 1.31339 1.12173 0.90455 0.92247 1.25011 0.95279 0.95082 0.99117 1.69947 1.36826 1.22958 1.23621 0.86691 0.79163 0.79762 0.82573 1.20304 1.21402 1.20307 1.21896 0.99434 0.96306 0.82175 1.46081 1.50933 1.31559 1.04938 1.19699 0.82436 0.85180 0.84593 1.90788 1.37118 1.25518 1.86541 1.20600 0.81104 0.84297 0.84786 1.90791 1.35684 1.24071 1.86556 1.43180 1.46670 1.36068 1.03563 1.17772 0.92596 0.98745 0.86662 1.20792 0.99853 1.01067 0.91559 1.20937 0.94218 1.00316 0.99752 1.17723 0.93212 0.99155 0.83655 1.91504 1.86224 1.82526 1.51632 1.21058 1.01128 1.01514 0.91376 1.21069 0.93329 0.97820 0.98990 0.95071 0.91160 0.93221 0.93222 0.91160 0.95063 0.96240 0.96242 0.92946 0.90915 0.90908 0.75044 0.73611 0.84258 0.84142 0.84148 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.25 7.65 -34.44 -0.26 -13.52 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.12 2.01 4.56 -4.04 -0.02 1.99 16 14 N -0.68 -9.49 4.95 -60.76 -0.30 -9.79 16 15 C 0.50 6.81 7.89 -11.64 -0.09 6.72 16 16 O -0.52 -8.10 16.48 5.48 0.09 -8.01 16 17 C 0.51 6.03 7.62 -11.64 -0.09 5.94 16 18 O -0.50 -6.64 14.16 5.47 0.08 -6.56 16 19 N -0.65 -6.04 5.33 -10.28 -0.05 -6.10 16 20 C 0.14 1.23 6.28 -83.71 -0.53 0.71 16 21 C -0.11 -0.79 9.96 -39.38 -0.39 -1.19 16 22 C -0.13 -0.94 10.02 -39.54 -0.40 -1.34 16 23 C 0.08 0.70 7.30 -39.39 -0.29 0.42 16 24 F -0.14 -1.30 17.26 2.25 0.04 -1.26 16 25 C -0.13 -1.12 10.02 -39.55 -0.40 -1.51 16 26 C -0.09 -0.87 8.65 -39.39 -0.34 -1.22 16 27 H 0.03 0.44 6.86 -51.92 -0.36 0.08 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 32 H 0.03 0.45 6.86 -51.92 -0.36 0.09 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.41 5.38 5.63 -40.82 -0.23 5.15 16 39 H 0.43 3.24 8.30 -40.82 -0.34 2.90 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.15 1.48 6.41 -52.49 -0.34 1.15 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -29.99 362.73 -7.01 -36.99 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.54 Total: 4.54 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.50 Total: -6.03 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.38 Total: -40.99 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.17 Total: -14.57 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.99 -7.01 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357992401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.620 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds