Wall clock time and date at job start Tue Mar 31 2020 13:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47576 * 2 1 4 4 C 1.53001 * 109.47120 * 239.99464 * 2 1 3 5 5 C 1.50700 * 109.47028 * 60.00525 * 4 2 1 6 6 H 1.08003 * 119.99629 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00287 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00022 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00414 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46978 * 60.00141 * 9 7 5 11 11 H 1.48496 * 109.47176 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46915 * 300.00636 * 9 7 5 13 13 C 1.53007 * 109.46788 * 120.00144 * 2 1 3 14 14 N 1.46503 * 109.46688 * 299.99517 * 13 2 1 15 15 C 1.34775 * 119.99785 * 180.02562 * 14 13 2 16 16 O 1.21366 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.49343 * 120.00181 * 180.02562 * 15 14 13 18 18 O 1.21386 * 120.00030 * 0.02562 * 17 15 14 19 19 N 1.34775 * 120.00181 * 180.02562 * 17 15 14 20 20 C 1.39810 * 120.00190 * 185.27378 * 19 17 15 21 21 C 1.38921 * 120.05286 * 213.62061 * 20 19 17 22 22 C 1.38085 * 119.94477 * 180.25344 * 21 20 19 23 23 C 1.38496 * 120.05465 * 359.49395 * 22 21 20 24 24 F 1.35099 * 119.95168 * 180.25175 * 23 22 21 25 25 C 1.38489 * 120.09827 * 0.23319 * 23 22 21 26 26 C 1.38084 * 120.05325 * 0.02562 * 25 23 22 27 27 H 1.09008 * 109.47189 * 300.00614 * 1 2 3 28 28 H 1.09002 * 109.47061 * 59.99932 * 1 2 3 29 29 H 1.09000 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47546 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46981 * 300.00117 * 3 2 1 32 32 H 1.09008 * 109.47363 * 59.99492 * 3 2 1 33 33 H 1.08998 * 109.47014 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47084 * 300.00480 * 4 2 1 35 35 H 0.96997 * 120.00202 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46924 * 180.02562 * 13 2 1 37 37 H 1.08992 * 109.47657 * 59.99742 * 13 2 1 38 38 H 0.96995 * 120.00366 * 0.02562 * 14 13 2 39 39 H 0.97006 * 119.99799 * 5.28197 * 19 17 15 40 40 H 1.07992 * 120.02259 * 0.02562 * 21 20 19 41 41 H 1.08005 * 119.97138 * 179.77003 * 22 21 20 42 42 H 1.08000 * 119.97414 * 180.02562 * 25 23 22 43 43 H 1.08002 * 120.02854 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5511 -3.8525 9 14 1.2481 0.3984 -5.2572 10 1 1.7421 1.7987 -5.2572 11 1 1.7431 -0.3017 -6.4696 12 1 -0.2370 0.3975 -5.2572 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6695 16 8 2.5759 -1.4770 3.7810 17 6 1.3793 0.2130 4.8889 18 8 0.6803 1.1992 4.7775 19 7 1.7056 -0.2468 6.1130 20 6 1.1511 0.3438 7.2525 21 6 1.8932 0.4277 8.4238 22 6 1.3415 1.0068 9.5494 23 6 0.0531 1.5132 9.5082 24 9 -0.4829 2.0840 10.6092 25 6 -0.6865 1.4358 8.3399 26 6 -0.1409 0.8528 7.2134 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7218 -1.2489 34 1 1.6766 -1.7490 -1.2491 35 1 2.8616 -1.8825 -4.7335 36 1 3.1299 -0.7209 1.2496 37 1 1.6766 -1.7489 1.2494 38 1 0.9937 0.7579 2.3564 39 1 2.3254 -0.9876 6.2035 40 1 2.8995 0.0369 8.4551 41 1 1.9167 1.0689 10.4614 42 1 -1.6909 1.8318 8.3099 43 1 -0.7179 0.7930 6.3024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357992401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:42 Heat of formation + Delta-G solvation = -118.044810 kcal Electronic energy + Delta-G solvation = -26082.779710 eV Core-core repulsion = 22041.398915 eV Total energy + Delta-G solvation = -4041.380795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88158 -42.21719 -40.62468 -39.26829 -38.66154 -36.15889 -35.18086 -33.93507 -32.20525 -30.53582 -29.19525 -28.17088 -27.97746 -26.01358 -24.68853 -24.23478 -22.94830 -21.48219 -20.48587 -19.41651 -18.72476 -18.52099 -18.31995 -17.69141 -17.37131 -16.91981 -16.60033 -16.51533 -16.26293 -15.81639 -15.53405 -15.20732 -14.91294 -14.75401 -14.59958 -14.38016 -14.20154 -13.96274 -13.93466 -13.77496 -13.57189 -12.90910 -12.85179 -12.73160 -12.60981 -12.32225 -12.23216 -12.18240 -12.01834 -11.55149 -11.47453 -11.13099 -10.89964 -10.74138 -10.48820 -10.29877 -10.15243 -9.20503 -8.12752 -6.19706 -0.24844 0.19554 0.41569 1.12795 1.44078 1.45190 1.52437 1.97470 2.43213 2.50285 2.56901 3.21862 3.25991 3.28012 3.72843 3.85411 3.90521 4.05783 4.18946 4.20215 4.24954 4.39297 4.65664 4.69602 4.71775 4.90143 4.94570 5.00384 5.07615 5.10596 5.12185 5.13365 5.17065 5.23437 5.42313 5.51030 5.52586 5.56987 5.74777 5.79833 5.86838 5.91418 6.22159 6.33395 6.57984 6.81276 6.94806 7.47653 8.99112 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036465 B = 0.002025 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.676866 B =13823.100268 C =14315.203097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.070 0.930 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.268 1.268 13 C 0.137 3.863 14 N -0.678 5.678 15 C 0.506 3.494 16 O -0.542 6.542 17 C 0.517 3.483 18 O -0.514 6.514 19 N -0.633 5.633 20 C 0.119 3.881 21 C -0.102 4.102 22 C -0.128 4.128 23 C 0.071 3.929 24 F -0.146 7.146 25 C -0.136 4.136 26 C -0.105 4.105 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.063 0.937 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.259 0.741 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.434 0.566 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 5.267 26.962 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.183 4.183 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.088 0.912 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.217 1.217 12 H -0.193 1.193 13 C 0.014 3.986 14 N -0.331 5.331 15 C 0.286 3.714 16 O -0.420 6.420 17 C 0.299 3.701 18 O -0.389 6.389 19 N -0.280 5.280 20 C 0.026 3.974 21 C -0.122 4.122 22 C -0.147 4.147 23 C 0.051 3.949 24 F -0.125 7.125 25 C -0.156 4.156 26 C -0.125 4.125 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.274 0.726 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.543 5.157 26.789 27.510 hybrid contribution -0.148 0.075 -1.174 1.186 sum -3.691 5.232 25.615 26.403 Atomic orbital electron populations 1.21734 0.93798 1.01250 1.01507 1.20734 0.96602 0.96262 0.93014 1.21733 1.00260 0.94805 1.01493 1.18957 0.94583 0.94311 0.91781 1.21555 1.30428 1.12102 0.91169 0.91190 1.25896 0.95735 0.95893 1.02551 1.70095 1.38662 1.24800 1.24110 0.85640 0.78899 0.78756 0.78578 1.19330 1.21726 1.19339 1.21514 0.98845 0.95819 0.82450 1.45871 1.51119 1.31643 1.04455 1.19968 0.81721 0.84771 0.84923 1.90783 1.37940 1.26429 1.86883 1.20123 0.81121 0.84030 0.84829 1.90794 1.36606 1.24753 1.86698 1.43048 1.46134 1.35908 1.02916 1.17960 0.92855 0.99587 0.87031 1.21072 1.00750 0.99941 0.90432 1.21243 0.93686 0.99105 1.00676 1.17946 0.93952 0.99506 0.83457 1.91490 1.86428 1.82707 1.51868 1.21167 1.01758 1.01422 0.91214 1.21055 0.93816 0.98698 0.98969 0.91766 0.92540 0.93834 0.93836 0.92536 0.91798 0.99007 0.99013 0.93187 0.91727 0.91740 0.74256 0.72583 0.81482 0.81684 0.83159 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.05 71.98 0.58 -3.54 16 2 C -0.07 -2.36 0.54 -52.18 -0.03 -2.39 16 3 C -0.13 -4.13 8.05 71.98 0.58 -3.55 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -26.88 7.65 25.60 0.20 -26.68 16 6 H 0.07 3.45 5.68 -2.91 -0.02 3.43 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -55.55 13.29 21.44 0.28 -55.27 16 9 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.14 4.40 4.56 86.38 0.39 4.80 16 14 N -0.68 -17.90 4.95 -464.51 -2.30 -20.20 16 15 C 0.51 13.08 7.89 87.24 0.69 13.77 16 16 O -0.54 -16.29 16.48 -3.30 -0.05 -16.34 16 17 C 0.52 11.43 7.62 87.24 0.66 12.10 16 18 O -0.51 -12.92 14.16 -3.36 -0.05 -12.96 16 19 N -0.63 -10.64 5.33 -304.79 -1.62 -12.26 16 20 C 0.12 1.92 6.28 38.20 0.24 2.16 16 21 C -0.10 -1.14 9.96 22.40 0.22 -0.92 16 22 C -0.13 -1.46 10.02 22.29 0.22 -1.24 16 23 C 0.07 1.09 7.30 22.39 0.16 1.25 16 24 F -0.15 -2.50 17.26 44.97 0.78 -1.72 16 25 C -0.14 -2.16 10.02 22.29 0.22 -1.93 16 26 C -0.11 -1.88 8.65 22.40 0.19 -1.69 16 27 H 0.06 1.67 6.86 -2.38 -0.02 1.66 16 28 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 32 H 0.06 1.68 6.86 -2.38 -0.02 1.66 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.42 9.97 5.63 -92.71 -0.52 9.45 16 39 H 0.43 5.72 8.30 -92.70 -0.77 4.95 16 40 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 43 H 0.14 2.68 6.41 -2.91 -0.02 2.66 16 Total: -1.00 -65.37 362.73 3.76 -61.61 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.23 Total: 17.58 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 4.92 Total: -5.48 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -3.64 Total: -87.73 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.10 Total: -29.31 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.37 3.76 -61.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357992401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.436 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds