Wall clock time and date at job start Tue Mar 31 2020 13:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47161 * 2 1 4 4 C 1.52997 * 109.47313 * 239.99662 * 2 1 3 5 5 C 1.50703 * 109.47172 * 60.00026 * 4 2 1 6 6 H 1.07997 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00110 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86809 * 119.99915 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46805 * 90.00079 * 9 7 5 11 11 H 1.48494 * 109.47002 * 210.00196 * 9 7 5 12 12 H 1.48497 * 109.46950 * 330.00091 * 9 7 5 13 13 C 1.53007 * 109.46824 * 119.99488 * 2 1 3 14 14 N 1.46496 * 109.47120 * 299.99843 * 13 2 1 15 15 C 1.34778 * 119.99501 * 179.97438 * 14 13 2 16 16 O 1.21356 * 120.00159 * 0.27992 * 15 14 13 17 17 C 1.49346 * 119.99786 * 180.02562 * 15 14 13 18 18 O 1.21384 * 120.00160 * 359.97438 * 17 15 14 19 19 N 1.34775 * 120.00368 * 179.97438 * 17 15 14 20 20 C 1.39828 * 120.00289 * 175.53082 * 19 17 15 21 21 C 1.38872 * 120.08103 * 34.66459 * 20 19 17 22 22 C 1.38124 * 119.94298 * 180.02562 * 21 20 19 23 23 C 1.38296 * 120.12416 * 0.02562 * 22 21 20 24 24 C 1.38277 * 120.16729 * 359.97438 * 23 22 21 25 25 C 1.38299 * 120.05031 * 359.67697 * 24 23 22 26 26 F 1.35099 * 120.06062 * 180.32177 * 25 24 23 27 27 H 1.08999 * 109.47211 * 300.00735 * 1 2 3 28 28 H 1.09000 * 109.47261 * 60.00410 * 1 2 3 29 29 H 1.08996 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47023 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46458 * 299.99478 * 3 2 1 32 32 H 1.08999 * 109.46941 * 59.99749 * 3 2 1 33 33 H 1.08997 * 109.46971 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.46920 * 300.00149 * 4 2 1 35 35 H 0.97007 * 120.00037 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.46658 * 180.02562 * 13 2 1 37 37 H 1.08999 * 109.46857 * 60.00491 * 13 2 1 38 38 H 0.96991 * 120.00239 * 0.02562 * 14 13 2 39 39 H 0.96999 * 119.99492 * 355.53720 * 19 17 15 40 40 H 1.07992 * 120.02733 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.93769 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.92043 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.97609 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 1.4324 0.1378 -4.8057 9 14 2.9444 -2.0012 -3.9032 10 1 2.0858 -3.2121 -3.9479 11 1 3.7359 -1.9090 -5.1562 12 1 3.8651 -2.0899 -2.7415 13 6 2.0399 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6696 16 8 2.5782 -1.4752 3.7810 17 6 1.3785 0.2126 4.8889 18 8 0.6811 1.1998 4.7775 19 7 1.7032 -0.2484 6.1131 20 6 1.3156 0.4623 7.2532 21 6 0.1052 1.1428 7.2713 22 6 -0.2746 1.8443 8.3989 23 6 0.5487 1.8708 9.5099 24 6 1.7550 1.1950 9.4971 25 6 2.1389 0.4844 8.3745 26 9 3.3144 -0.1813 8.3642 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7489 -1.2491 35 1 1.6668 -0.1936 -5.6867 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -1.7488 1.2494 38 1 0.9937 0.7579 2.3564 39 1 2.2057 -1.0731 6.2031 40 1 -0.5383 1.1241 6.4042 41 1 -1.2158 2.3738 8.4128 42 1 0.2487 2.4207 10.3896 43 1 2.3952 1.2174 10.3665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358008598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:50 Heat of formation + Delta-G solvation = -94.439025 kcal Electronic energy + Delta-G solvation = -26441.848687 eV Core-core repulsion = 22401.491516 eV Total energy + Delta-G solvation = -4040.357171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.29948 -41.27091 -39.64359 -38.45090 -37.37109 -35.48145 -33.75931 -32.14677 -31.07708 -30.18969 -28.01155 -27.02798 -26.60691 -24.94643 -23.49939 -22.76208 -21.94727 -20.48917 -19.46248 -18.39072 -17.71973 -17.58116 -16.90547 -16.69263 -16.60425 -16.06234 -15.90128 -15.40361 -15.12378 -14.68133 -14.42960 -14.25015 -13.92786 -13.74544 -13.54615 -13.44698 -12.87380 -12.80014 -12.42710 -12.38700 -12.31583 -12.17950 -11.61310 -11.30985 -11.18081 -11.03751 -10.94028 -10.66566 -10.57415 -10.03970 -9.96527 -9.78217 -9.52838 -9.28415 -9.13780 -9.04530 -8.67270 -8.56568 -6.06850 -4.04589 0.51060 0.75944 1.28314 2.02647 2.93880 3.21223 3.29059 3.36704 3.37801 3.40404 3.74335 4.24067 4.31035 4.42703 4.50879 4.78537 4.86660 5.03505 5.22269 5.24648 5.41418 5.50240 5.55661 5.63429 5.69255 5.84929 5.96589 5.99225 6.01632 6.05136 6.21458 6.25018 6.43091 6.53212 6.54786 6.60042 6.82104 6.97373 7.00239 7.12953 7.16769 7.30166 7.44726 7.74422 7.84591 8.49590 8.97116 9.55327 11.05765 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.002290 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.945432 B =12223.143113 C =12813.110798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.121 3.879 14 N -0.682 5.682 15 C 0.504 3.496 16 O -0.521 6.521 17 C 0.512 3.488 18 O -0.497 6.497 19 N -0.646 5.646 20 C 0.112 3.888 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.104 4.104 24 C -0.136 4.136 25 C 0.076 3.924 26 F -0.135 7.135 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.426 0.574 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 2.114 28.680 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.097 0.903 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.001 4.001 14 N -0.335 5.335 15 C 0.283 3.717 16 O -0.398 6.398 17 C 0.295 3.705 18 O -0.370 6.370 19 N -0.293 5.293 20 C 0.017 3.983 21 C -0.114 4.114 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.155 4.155 25 C 0.055 3.945 26 F -0.113 7.113 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.265 0.735 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.021 2.068 28.361 28.508 hybrid contribution 0.863 -1.012 -0.250 1.353 sum -1.157 1.057 28.111 28.155 Atomic orbital electron populations 1.21810 0.94565 1.01407 1.01130 1.20726 0.96051 0.96050 0.93539 1.21810 1.00541 0.95440 1.01127 1.19595 0.96345 0.95507 0.92474 1.21057 1.31972 1.13399 0.88544 0.90325 1.25003 0.95698 0.96767 0.95988 1.69898 1.45835 1.40509 0.97898 0.86855 0.81306 0.83889 0.77685 1.20370 1.21489 1.19004 1.21905 0.99439 0.96307 0.82426 1.46017 1.51056 1.31644 1.04787 1.19664 0.82409 0.85104 0.84547 1.90788 1.36901 1.25613 1.86527 1.20550 0.80838 0.84534 0.84602 1.90766 1.34852 1.24963 1.86458 1.43026 1.55845 1.26998 1.03424 1.17781 0.94585 0.99700 0.86279 1.21316 0.93705 0.96702 0.99695 1.21184 1.00370 0.98909 0.92391 1.21079 0.93444 0.98851 0.98938 1.21029 0.98575 0.98641 0.97304 1.17533 0.82702 0.98599 0.95714 1.91514 1.44390 1.78468 1.96955 0.94829 0.90599 0.93267 0.93261 0.90599 0.94816 0.96262 0.96708 0.92755 0.90931 0.90920 0.74892 0.73532 0.83121 0.84667 0.84710 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.06 -1.12 0.54 -154.50 -0.08 -1.20 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.43 8.20 -34.44 -0.28 -13.72 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 9 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.12 1.91 4.56 -4.04 -0.02 1.89 16 14 N -0.68 -9.44 4.95 -60.76 -0.30 -9.74 16 15 C 0.50 6.99 7.89 -11.63 -0.09 6.89 16 16 O -0.52 -8.27 16.48 5.49 0.09 -8.18 16 17 C 0.51 6.38 7.73 -11.63 -0.09 6.29 16 18 O -0.50 -6.69 13.89 5.47 0.08 -6.61 16 19 N -0.65 -6.98 5.21 -10.24 -0.05 -7.04 16 20 C 0.11 1.14 6.31 -83.65 -0.53 0.61 16 21 C -0.09 -0.88 8.70 -39.39 -0.34 -1.22 16 22 C -0.11 -0.76 10.04 -39.60 -0.40 -1.16 16 23 C -0.10 -0.63 10.04 -39.55 -0.40 -1.02 16 24 C -0.14 -0.96 10.02 -39.54 -0.40 -1.36 16 25 C 0.08 0.71 7.31 -39.23 -0.29 0.43 16 26 F -0.13 -1.38 16.95 2.25 0.04 -1.34 16 27 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 28 H 0.08 1.45 6.62 -51.93 -0.34 1.10 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.46 6.62 -51.93 -0.34 1.11 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 33 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.41 5.36 5.63 -40.82 -0.23 5.13 16 39 H 0.43 4.21 8.13 -40.82 -0.33 3.87 16 40 H 0.15 1.52 6.19 -52.49 -0.33 1.19 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -30.60 358.34 -6.64 -37.24 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.49 Total: 5.73 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.50 Total: -5.81 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.42 Total: -42.89 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.17 Total: -14.79 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.60 -6.64 -37.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358008598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.201 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds