Wall clock time and date at job start Tue Mar 31 2020 13:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47161 * 2 1 4 4 C 1.52997 * 109.47313 * 239.99662 * 2 1 3 5 5 C 1.50703 * 109.47172 * 60.00026 * 4 2 1 6 6 H 1.07997 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00110 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86809 * 119.99915 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46805 * 90.00079 * 9 7 5 11 11 H 1.48494 * 109.47002 * 210.00196 * 9 7 5 12 12 H 1.48497 * 109.46950 * 330.00091 * 9 7 5 13 13 C 1.53007 * 109.46824 * 119.99488 * 2 1 3 14 14 N 1.46496 * 109.47120 * 299.99843 * 13 2 1 15 15 C 1.34778 * 119.99501 * 179.97438 * 14 13 2 16 16 O 1.21356 * 120.00159 * 0.27992 * 15 14 13 17 17 C 1.49346 * 119.99786 * 180.02562 * 15 14 13 18 18 O 1.21384 * 120.00160 * 359.97438 * 17 15 14 19 19 N 1.34775 * 120.00368 * 179.97438 * 17 15 14 20 20 C 1.39828 * 120.00289 * 175.53082 * 19 17 15 21 21 C 1.38872 * 120.08103 * 34.66459 * 20 19 17 22 22 C 1.38124 * 119.94298 * 180.02562 * 21 20 19 23 23 C 1.38296 * 120.12416 * 0.02562 * 22 21 20 24 24 C 1.38277 * 120.16729 * 359.97438 * 23 22 21 25 25 C 1.38299 * 120.05031 * 359.67697 * 24 23 22 26 26 F 1.35099 * 120.06062 * 180.32177 * 25 24 23 27 27 H 1.08999 * 109.47211 * 300.00735 * 1 2 3 28 28 H 1.09000 * 109.47261 * 60.00410 * 1 2 3 29 29 H 1.08996 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47023 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46458 * 299.99478 * 3 2 1 32 32 H 1.08999 * 109.46941 * 59.99749 * 3 2 1 33 33 H 1.08997 * 109.46971 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.46920 * 300.00149 * 4 2 1 35 35 H 0.97007 * 120.00037 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.46658 * 180.02562 * 13 2 1 37 37 H 1.08999 * 109.46857 * 60.00491 * 13 2 1 38 38 H 0.96991 * 120.00239 * 0.02562 * 14 13 2 39 39 H 0.96999 * 119.99492 * 355.53720 * 19 17 15 40 40 H 1.07992 * 120.02733 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.93769 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.92043 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.97609 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 1.4324 0.1378 -4.8057 9 14 2.9444 -2.0012 -3.9032 10 1 2.0858 -3.2121 -3.9479 11 1 3.7359 -1.9090 -5.1562 12 1 3.8651 -2.0899 -2.7415 13 6 2.0399 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6696 16 8 2.5782 -1.4752 3.7810 17 6 1.3785 0.2126 4.8889 18 8 0.6811 1.1998 4.7775 19 7 1.7032 -0.2484 6.1131 20 6 1.3156 0.4623 7.2532 21 6 0.1052 1.1428 7.2713 22 6 -0.2746 1.8443 8.3989 23 6 0.5487 1.8708 9.5099 24 6 1.7550 1.1950 9.4971 25 6 2.1389 0.4844 8.3745 26 9 3.3144 -0.1813 8.3642 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7489 -1.2491 35 1 1.6668 -0.1936 -5.6867 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -1.7488 1.2494 38 1 0.9937 0.7579 2.3564 39 1 2.2057 -1.0731 6.2031 40 1 -0.5383 1.1241 6.4042 41 1 -1.2158 2.3738 8.4128 42 1 0.2487 2.4207 10.3896 43 1 2.3952 1.2174 10.3665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358008598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:50 Heat of formation + Delta-G solvation = -114.132890 kcal Electronic energy + Delta-G solvation = -26442.702677 eV Core-core repulsion = 22401.491516 eV Total energy + Delta-G solvation = -4041.211161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.00786 -42.22608 -40.60774 -39.30940 -38.73219 -36.35643 -35.20319 -34.01275 -31.66729 -30.88771 -29.82254 -28.26888 -28.01973 -26.04064 -24.50103 -23.87964 -22.99497 -21.51788 -20.52326 -19.50661 -18.91014 -18.66189 -18.39150 -17.66317 -17.45474 -17.00227 -16.75382 -16.46090 -16.08615 -15.88725 -15.71346 -15.40801 -15.14059 -14.97713 -14.87621 -14.23091 -14.21084 -14.19229 -13.89199 -13.52856 -13.10927 -12.94914 -12.86958 -12.81854 -12.65320 -12.38943 -12.30801 -12.19056 -11.77776 -11.67581 -11.54509 -11.30030 -10.95042 -10.79646 -10.69719 -10.33021 -9.89195 -9.36068 -8.21255 -6.21808 -0.24176 0.16338 0.39968 1.06698 1.37584 1.40302 1.49972 1.93681 2.39591 2.40120 2.60088 3.10482 3.14222 3.21295 3.73576 3.82747 3.99103 4.01097 4.11907 4.28958 4.31087 4.35130 4.58508 4.65889 4.68595 4.91339 4.93307 4.94117 5.03465 5.07777 5.08891 5.13981 5.26446 5.29312 5.36887 5.40788 5.43479 5.53896 5.65995 5.67302 5.76728 5.86748 6.14468 6.38632 6.48596 6.75513 6.85515 7.40797 8.94350 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.002290 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.945432 B =12223.143113 C =12813.110798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.128 4.128 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.050 0.950 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.248 1.248 13 C 0.133 3.867 14 N -0.677 5.677 15 C 0.508 3.492 16 O -0.542 6.542 17 C 0.517 3.483 18 O -0.510 6.510 19 N -0.638 5.638 20 C 0.086 3.914 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.093 4.093 24 C -0.134 4.134 25 C 0.059 3.941 26 F -0.145 7.145 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.419 0.581 39 H 0.428 0.572 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.171 0.829 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 2.008 32.033 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.059 4.059 3 C -0.185 4.185 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.171 1.171 13 C 0.010 3.990 14 N -0.330 5.330 15 C 0.288 3.712 16 O -0.420 6.420 17 C 0.299 3.701 18 O -0.384 6.384 19 N -0.285 5.285 20 C -0.008 4.008 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.111 4.111 24 C -0.153 4.153 25 C 0.038 3.962 26 F -0.123 7.123 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.258 0.742 39 H 0.267 0.733 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.893 1.964 31.762 31.879 hybrid contribution 0.748 -0.880 -1.160 1.637 sum -1.144 1.084 30.602 30.642 Atomic orbital electron populations 1.21740 0.93994 1.01570 1.01167 1.20578 0.96477 0.96060 0.92790 1.21743 1.00537 0.95071 1.01143 1.19565 0.96220 0.95631 0.92649 1.21365 1.30272 1.12260 0.90149 0.93165 1.25871 0.97520 1.00053 0.95874 1.70049 1.48173 1.42717 0.98453 0.85864 0.79821 0.80206 0.77980 1.19674 1.21750 1.17141 1.21610 0.99294 0.96100 0.82010 1.45854 1.51088 1.31693 1.04377 1.19852 0.81796 0.84694 0.84842 1.90780 1.37799 1.26530 1.86851 1.20174 0.80955 0.84322 0.84602 1.90763 1.35615 1.25477 1.86576 1.42949 1.55265 1.26989 1.03286 1.17995 0.95577 1.00946 0.86318 1.21365 0.93501 0.97605 1.00444 1.21524 1.01371 0.97960 0.91709 1.21510 0.92335 0.97647 0.99584 1.21396 0.99250 0.97553 0.97097 1.17802 0.82562 0.99492 0.96376 1.91485 1.44965 1.78849 1.97047 0.91866 0.93468 0.93037 0.93201 0.93433 0.91926 0.96236 0.96289 0.92908 0.91003 0.90733 0.74244 0.73274 0.84299 0.82263 0.81186 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 8.05 71.98 0.58 -3.63 16 2 C -0.06 -2.02 0.54 -52.18 -0.03 -2.04 16 3 C -0.13 -4.27 8.05 71.98 0.58 -3.69 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -26.87 8.20 25.60 0.21 -26.66 16 6 H 0.05 2.92 5.92 -2.91 -0.02 2.90 16 7 C 0.00 0.17 5.47 84.65 0.46 0.63 16 8 N -0.95 -58.51 13.96 21.44 0.30 -58.21 16 9 Si 0.94 43.64 27.47 68.60 1.88 45.52 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 13 C 0.13 3.93 4.56 86.38 0.39 4.33 16 14 N -0.68 -17.55 4.95 -464.51 -2.30 -19.85 16 15 C 0.51 13.47 7.89 87.24 0.69 14.15 16 16 O -0.54 -16.59 16.48 -3.27 -0.05 -16.64 16 17 C 0.52 12.44 7.73 87.24 0.67 13.12 16 18 O -0.51 -13.22 13.89 -3.35 -0.05 -13.27 16 19 N -0.64 -13.48 5.21 -304.66 -1.59 -15.06 16 20 C 0.09 1.68 6.31 38.23 0.24 1.93 16 21 C -0.11 -1.90 8.70 22.39 0.19 -1.71 16 22 C -0.11 -1.19 10.04 22.26 0.22 -0.96 16 23 C -0.09 -0.77 10.04 22.29 0.22 -0.54 16 24 C -0.13 -1.52 10.02 22.29 0.22 -1.30 16 25 C 0.06 1.03 7.31 22.50 0.16 1.19 16 26 F -0.14 -2.85 16.95 44.97 0.76 -2.09 16 27 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 28 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.85 6.62 -2.38 -0.02 1.84 16 32 H 0.06 1.71 6.86 -2.39 -0.02 1.69 16 33 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 34 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 35 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 36 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.42 9.99 5.63 -92.72 -0.52 9.46 16 39 H 0.43 8.36 8.13 -92.71 -0.75 7.60 16 40 H 0.14 2.72 6.19 -2.91 -0.02 2.70 16 41 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -67.46 358.34 3.62 -63.84 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.26 Total: 20.98 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 4.92 Total: -5.22 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -3.59 Total: -93.12 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.10 Total: -29.91 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.76 Total: -2.09 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -67.46 3.62 -63.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358008598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.293 kcal (2) G-P(sol) polarization free energy of solvation -67.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds