Wall clock time and date at job start Tue Mar 31 2020 13:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46985 * 2 1 4 4 C 1.53000 * 109.47110 * 240.00137 * 2 1 3 5 5 C 1.50703 * 109.47282 * 59.99566 * 4 2 1 6 6 H 1.08005 * 119.99661 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00152 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00214 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47092 * 90.00362 * 9 7 5 11 11 H 1.48502 * 109.47439 * 210.00538 * 9 7 5 12 12 H 1.48504 * 109.47278 * 330.00263 * 9 7 5 13 13 C 1.53000 * 109.47333 * 119.99902 * 2 1 3 14 14 N 1.46505 * 109.46957 * 299.99976 * 13 2 1 15 15 C 1.34777 * 119.99850 * 180.02562 * 14 13 2 16 16 O 1.21585 * 119.99794 * 4.97319 * 15 14 13 17 17 N 1.34770 * 120.00072 * 184.97281 * 15 14 13 18 18 C 1.47071 * 121.09018 * 174.78950 * 17 15 14 19 19 C 1.53005 * 108.94537 * 115.17150 * 18 17 15 20 20 C 1.52252 * 109.18099 * 46.97539 * 19 18 17 21 21 C 1.39291 * 123.33714 * 160.97044 * 20 19 18 22 22 C 1.32907 * 115.75695 * 179.60680 * 21 20 19 23 23 S 1.75737 * 109.57911 * 0.28804 * 22 21 20 24 24 C 1.34632 * 123.14319 * 340.85533 * 20 19 18 25 25 C 1.47198 * 121.09320 * 354.81341 * 17 15 14 26 26 H 1.09007 * 109.46931 * 300.00162 * 1 2 3 27 27 H 1.09001 * 109.47593 * 59.99765 * 1 2 3 28 28 H 1.09000 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46841 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46950 * 299.99753 * 3 2 1 31 31 H 1.08997 * 109.47145 * 59.99705 * 3 2 1 32 32 H 1.08999 * 109.46904 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46886 * 299.99919 * 4 2 1 34 34 H 0.96992 * 119.99784 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47195 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47009 * 59.99868 * 13 2 1 37 37 H 0.96997 * 119.99601 * 359.97438 * 14 13 2 38 38 H 1.08990 * 109.55813 * 355.33310 * 18 17 15 39 39 H 1.09000 * 109.64815 * 235.06280 * 18 17 15 40 40 H 1.08992 * 109.52319 * 287.06174 * 19 18 17 41 41 H 1.09007 * 109.51948 * 166.88286 * 19 18 17 42 42 H 1.07998 * 122.12143 * 359.58789 * 21 20 19 43 43 H 1.07998 * 125.20504 * 180.08447 * 22 21 20 44 44 H 1.09000 * 109.83974 * 104.09856 * 25 17 15 45 45 H 1.09005 * 109.82792 * 343.15341 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2489 0.3993 -5.2572 10 1 2.2272 1.4410 -5.6608 11 1 1.0842 -0.5796 -6.3617 12 1 -0.0594 1.0368 -4.9616 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0305 2.4454 15 6 1.8778 -0.4907 3.6695 16 8 2.6496 -1.4233 3.7827 17 7 1.3483 0.0829 4.7681 18 6 1.5970 -0.4697 6.1082 19 6 2.3974 0.5474 6.9242 20 6 1.7640 1.9231 6.7689 21 6 1.9932 2.9756 7.6520 22 6 1.3689 4.1141 7.3682 23 16 0.4080 3.9114 5.9108 24 6 0.9289 2.2394 5.7613 25 6 0.5017 1.2828 4.6662 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2495 33 1 1.6766 -1.7489 -1.2492 34 1 2.8615 -1.8822 -4.7336 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9943 0.7583 2.3563 38 1 2.1649 -1.3958 6.0213 39 1 0.6472 -0.6692 6.6044 40 1 3.4252 0.5768 6.5625 41 1 2.3885 0.2590 7.9754 42 1 2.6371 2.8729 8.5130 43 1 1.4387 5.0234 7.9467 44 1 -0.5449 1.0096 4.8011 45 1 0.6397 1.7509 3.6915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358732280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:09 Heat of formation + Delta-G solvation = -3.595568 kcal Electronic energy + Delta-G solvation = -25081.570697 eV Core-core repulsion = 21611.365970 eV Total energy + Delta-G solvation = -3470.204727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49434 -38.73588 -37.19261 -35.54738 -33.74828 -32.26924 -31.32058 -30.50124 -27.15609 -26.51050 -26.45502 -25.28019 -24.35677 -22.90325 -21.87728 -20.28512 -19.28180 -17.97832 -17.70734 -17.02301 -16.41927 -16.13233 -15.66767 -15.25037 -14.87166 -14.53449 -14.23554 -14.17493 -13.75589 -13.42071 -13.27118 -13.10256 -13.02896 -12.84797 -12.68736 -12.16742 -12.05773 -11.97249 -11.84741 -11.43636 -11.14927 -11.01370 -10.89699 -10.84949 -10.63425 -10.39138 -10.24616 -10.05728 -9.87147 -9.20200 -9.07017 -8.92107 -8.85181 -8.60494 -8.50263 -8.35181 -5.99263 -4.00539 0.67442 1.26168 1.67396 2.36428 2.66653 3.31165 3.31392 3.38374 3.39988 3.99990 4.32741 4.45778 4.48419 4.73787 4.82965 4.98525 5.06770 5.09580 5.26087 5.33414 5.36274 5.49606 5.61369 5.64724 5.74089 5.75081 5.76891 6.02477 6.16775 6.17364 6.21626 6.25802 6.34396 6.41744 6.59510 6.63193 6.78812 6.95918 7.06853 7.07954 7.14408 7.65144 7.77585 7.99281 8.05053 8.41189 8.71373 9.04245 9.62531 11.12233 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.002718 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.876034 B =10299.392786 C =11227.094091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.146 3.854 14 N -0.736 5.736 15 C 0.709 3.291 16 O -0.587 6.587 17 N -0.631 5.631 18 C 0.130 3.870 19 C -0.074 4.074 20 C -0.091 4.091 21 C -0.129 4.129 22 C -0.213 4.213 23 S 0.112 5.888 24 C -0.204 4.204 25 C 0.188 3.812 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.392 0.608 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.138 0.862 43 H 0.165 0.835 44 H 0.085 0.915 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 9.821 24.325 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.022 3.978 14 N -0.393 5.393 15 C 0.410 3.590 16 O -0.465 6.465 17 N -0.370 5.370 18 C 0.007 3.993 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.159 4.159 22 C -0.349 4.349 23 S 0.377 5.623 24 C -0.322 4.322 25 C 0.062 3.938 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.156 0.844 43 H 0.183 0.817 44 H 0.103 0.897 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.511 9.957 23.385 26.007 hybrid contribution 0.395 0.192 -0.058 0.443 sum -5.116 10.148 23.327 25.948 Atomic orbital electron populations 1.21752 0.95300 1.01172 1.00081 1.20920 0.95457 0.95859 0.95069 1.21753 1.00613 0.95908 1.00052 1.19087 0.96403 0.95238 0.89378 1.21180 1.31175 1.12036 0.90514 0.92270 1.25012 0.95340 0.95075 0.99073 1.69966 1.36975 1.23006 1.23430 0.86652 0.79172 0.79415 0.83088 1.20789 1.21347 1.19951 1.21524 0.98843 0.95575 0.81830 1.45535 1.56180 1.32998 1.04578 1.15823 0.80541 0.82290 0.80348 1.90909 1.38616 1.31554 1.85436 1.47259 1.54007 1.29510 1.06246 1.21387 1.00073 0.97143 0.80702 1.20952 0.99687 0.89996 1.00841 1.19543 0.99000 0.97174 0.94655 1.20067 1.02356 0.92172 1.01340 1.25398 1.04774 1.02766 1.01930 1.84220 1.47945 1.05908 1.24238 1.25008 1.06127 0.98325 1.02745 1.20119 0.94604 0.83379 0.95683 0.95476 0.91422 0.93301 0.93307 0.91421 0.95513 0.96287 0.96272 0.93041 0.91884 0.91941 0.77083 0.88084 0.91180 0.89936 0.89520 0.84384 0.81742 0.89677 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.15 2.63 4.57 -4.04 -0.02 2.61 16 14 N -0.74 -11.19 4.86 -65.22 -0.32 -11.50 16 15 C 0.71 11.27 8.31 -86.92 -0.72 10.55 16 16 O -0.59 -11.55 15.82 5.29 0.08 -11.47 16 17 N -0.63 -7.71 2.95 -179.26 -0.53 -8.23 16 18 C 0.13 1.33 6.33 -3.73 -0.02 1.30 16 19 C -0.07 -0.65 6.32 -27.11 -0.17 -0.83 16 20 C -0.09 -0.87 5.80 -104.74 -0.61 -1.48 16 21 C -0.13 -1.06 9.99 -41.03 -0.41 -1.47 16 22 C -0.21 -1.64 11.20 28.89 0.32 -1.31 16 23 S 0.11 0.94 23.32 -107.50 -2.51 -1.57 16 24 C -0.20 -1.99 6.44 -35.16 -0.23 -2.22 16 25 C 0.19 1.84 6.60 -4.39 -0.03 1.81 16 26 H 0.03 0.38 6.86 -51.92 -0.36 0.02 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.39 5.11 3.83 -40.82 -0.16 4.96 16 38 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.85 6.04 -51.93 -0.31 0.54 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -31.81 365.85 -10.63 -42.43 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.74 Total: 2.20 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.84 Total: -7.84 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.11 Total: -45.42 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.81 -10.63 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358732280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.837 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds