Wall clock time and date at job start Tue Mar 31 2020 13:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46985 * 2 1 4 4 C 1.53000 * 109.47110 * 240.00137 * 2 1 3 5 5 C 1.50703 * 109.47282 * 59.99566 * 4 2 1 6 6 H 1.08005 * 119.99661 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00152 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00214 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47092 * 90.00362 * 9 7 5 11 11 H 1.48502 * 109.47439 * 210.00538 * 9 7 5 12 12 H 1.48504 * 109.47278 * 330.00263 * 9 7 5 13 13 C 1.53000 * 109.47333 * 119.99902 * 2 1 3 14 14 N 1.46505 * 109.46957 * 299.99976 * 13 2 1 15 15 C 1.34777 * 119.99850 * 180.02562 * 14 13 2 16 16 O 1.21585 * 119.99794 * 4.97319 * 15 14 13 17 17 N 1.34770 * 120.00072 * 184.97281 * 15 14 13 18 18 C 1.47071 * 121.09018 * 174.78950 * 17 15 14 19 19 C 1.53005 * 108.94537 * 115.17150 * 18 17 15 20 20 C 1.52252 * 109.18099 * 46.97539 * 19 18 17 21 21 C 1.39291 * 123.33714 * 160.97044 * 20 19 18 22 22 C 1.32907 * 115.75695 * 179.60680 * 21 20 19 23 23 S 1.75737 * 109.57911 * 0.28804 * 22 21 20 24 24 C 1.34632 * 123.14319 * 340.85533 * 20 19 18 25 25 C 1.47198 * 121.09320 * 354.81341 * 17 15 14 26 26 H 1.09007 * 109.46931 * 300.00162 * 1 2 3 27 27 H 1.09001 * 109.47593 * 59.99765 * 1 2 3 28 28 H 1.09000 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46841 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46950 * 299.99753 * 3 2 1 31 31 H 1.08997 * 109.47145 * 59.99705 * 3 2 1 32 32 H 1.08999 * 109.46904 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46886 * 299.99919 * 4 2 1 34 34 H 0.96992 * 119.99784 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47195 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47009 * 59.99868 * 13 2 1 37 37 H 0.96997 * 119.99601 * 359.97438 * 14 13 2 38 38 H 1.08990 * 109.55813 * 355.33310 * 18 17 15 39 39 H 1.09000 * 109.64815 * 235.06280 * 18 17 15 40 40 H 1.08992 * 109.52319 * 287.06174 * 19 18 17 41 41 H 1.09007 * 109.51948 * 166.88286 * 19 18 17 42 42 H 1.07998 * 122.12143 * 359.58789 * 21 20 19 43 43 H 1.07998 * 125.20504 * 180.08447 * 22 21 20 44 44 H 1.09000 * 109.83974 * 104.09856 * 25 17 15 45 45 H 1.09005 * 109.82792 * 343.15341 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2489 0.3993 -5.2572 10 1 2.2272 1.4410 -5.6608 11 1 1.0842 -0.5796 -6.3617 12 1 -0.0594 1.0368 -4.9616 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0305 2.4454 15 6 1.8778 -0.4907 3.6695 16 8 2.6496 -1.4233 3.7827 17 7 1.3483 0.0829 4.7681 18 6 1.5970 -0.4697 6.1082 19 6 2.3974 0.5474 6.9242 20 6 1.7640 1.9231 6.7689 21 6 1.9932 2.9756 7.6520 22 6 1.3689 4.1141 7.3682 23 16 0.4080 3.9114 5.9108 24 6 0.9289 2.2394 5.7613 25 6 0.5017 1.2828 4.6662 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2495 33 1 1.6766 -1.7489 -1.2492 34 1 2.8615 -1.8822 -4.7336 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9943 0.7583 2.3563 38 1 2.1649 -1.3958 6.0213 39 1 0.6472 -0.6692 6.6044 40 1 3.4252 0.5768 6.5625 41 1 2.3885 0.2590 7.9754 42 1 2.6371 2.8729 8.5130 43 1 1.4387 5.0234 7.9467 44 1 -0.5449 1.0096 4.8011 45 1 0.6397 1.7509 3.6915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358732280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:08 Heat of formation + Delta-G solvation = -21.454061 kcal Electronic energy + Delta-G solvation = -25082.345099 eV Core-core repulsion = 21611.365970 eV Total energy + Delta-G solvation = -3470.979130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59339 -39.68827 -38.63666 -36.50147 -35.32314 -34.03480 -32.26973 -31.27454 -29.08522 -27.96559 -27.76721 -26.29077 -25.22178 -24.60814 -22.75271 -21.32018 -20.48099 -19.36485 -18.47271 -18.32978 -17.92831 -17.31815 -16.73605 -16.51042 -16.02531 -15.78104 -15.52765 -15.38338 -14.99156 -14.68006 -14.40783 -14.19169 -14.03454 -13.93362 -13.83599 -13.69004 -13.52162 -12.87179 -12.72014 -12.67917 -12.59125 -12.53637 -12.33602 -12.21543 -12.14315 -11.96096 -11.56303 -11.53628 -11.42107 -10.98281 -10.84767 -10.49928 -10.27718 -9.69091 -9.47763 -9.21394 -8.12561 -6.20293 0.04184 0.61756 1.06351 1.43670 1.44035 1.54256 1.60055 1.73810 2.07202 2.45330 2.90433 3.22041 3.59883 3.83109 3.94275 4.02886 4.09025 4.09580 4.22757 4.30506 4.36785 4.50575 4.58634 4.66546 4.70718 4.73264 4.79169 4.85387 4.95753 5.03271 5.10589 5.12565 5.14669 5.34678 5.38412 5.42257 5.48714 5.50785 5.54035 5.57833 5.59226 5.81276 5.87732 5.91369 6.32055 6.88100 6.95196 7.47246 7.48819 9.00089 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.002718 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.876034 B =10299.392786 C =11227.094091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.161 3.839 14 N -0.725 5.725 15 C 0.705 3.295 16 O -0.632 6.632 17 N -0.625 5.625 18 C 0.125 3.875 19 C -0.068 4.068 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.210 4.210 23 S 0.120 5.880 24 C -0.224 4.224 25 C 0.184 3.816 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.064 0.936 32 H -0.015 1.015 33 H -0.012 1.012 34 H 0.259 0.741 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.406 0.594 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.156 0.844 43 H 0.188 0.812 44 H 0.106 0.894 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 12.552 25.976 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.036 3.964 14 N -0.383 5.383 15 C 0.407 3.593 16 O -0.513 6.513 17 N -0.362 5.362 18 C 0.003 3.997 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.170 4.170 22 C -0.345 4.345 23 S 0.385 5.615 24 C -0.342 4.342 25 C 0.060 3.940 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.173 0.827 43 H 0.205 0.795 44 H 0.124 0.876 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.422 12.747 25.077 29.094 hybrid contribution 0.991 -0.643 -0.460 1.268 sum -6.431 12.104 24.617 28.176 Atomic orbital electron populations 1.21679 0.93421 1.01087 1.01532 1.20714 0.96830 0.96180 0.92709 1.21683 0.99874 0.94758 1.01454 1.18963 0.94280 0.94283 0.92195 1.21590 1.30393 1.12045 0.91008 0.90848 1.25947 0.95699 0.95855 1.02717 1.70126 1.38842 1.24992 1.24069 0.85545 0.79211 0.78093 0.78795 1.20240 1.21627 1.18231 1.21094 0.97507 0.95025 0.82778 1.45201 1.56273 1.33197 1.03625 1.15957 0.80308 0.81986 0.81088 1.90881 1.40647 1.33630 1.86156 1.47285 1.53296 1.29879 1.05785 1.21567 1.01255 0.96862 0.80025 1.20903 0.98351 0.89613 1.01985 1.19744 0.99040 0.97624 0.95029 1.20258 1.02946 0.91962 1.01866 1.25759 1.03778 1.03488 1.01522 1.84181 1.47921 1.04729 1.24704 1.25058 1.07048 0.99176 1.02911 1.20328 0.95092 0.82407 0.96215 0.91454 0.92420 0.94234 0.94551 0.92297 0.91703 0.99617 0.99388 0.93198 0.93979 0.93527 0.75481 0.89879 0.88926 0.91507 0.86901 0.82656 0.79457 0.87640 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.37 7.65 25.60 0.20 -27.18 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 9 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.16 5.92 4.57 86.38 0.39 6.31 16 14 N -0.73 -21.31 4.86 -478.53 -2.33 -23.64 16 15 C 0.71 22.19 8.31 179.06 1.49 23.68 16 16 O -0.63 -25.51 15.82 -3.98 -0.06 -25.57 16 17 N -0.62 -14.40 2.95 -839.33 -2.47 -16.88 16 18 C 0.13 2.41 6.33 86.27 0.55 2.95 16 19 C -0.07 -1.09 6.32 30.35 0.19 -0.90 16 20 C -0.10 -1.70 5.80 -19.94 -0.12 -1.82 16 21 C -0.14 -1.92 9.99 21.35 0.21 -1.71 16 22 C -0.21 -2.59 11.20 66.65 0.75 -1.84 16 23 S 0.12 1.68 23.32 -56.49 -1.32 0.37 16 24 C -0.22 -3.82 6.44 25.13 0.16 -3.65 16 25 C 0.18 3.14 6.60 85.77 0.57 3.71 16 26 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 27 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 31 H 0.06 1.70 6.86 -2.39 -0.02 1.68 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.41 9.50 3.83 -92.71 -0.35 9.15 16 38 H 0.08 1.91 7.06 -2.39 -0.02 1.90 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.50 6.04 -2.38 -0.01 1.48 16 Total: -1.00 -71.42 365.85 2.88 -68.54 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.64 Total: 16.12 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 6.10 Total: -7.50 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -4.51 Total: -97.50 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.32 Total: 0.37 kcal Total: -71.42 2.88 -68.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358732280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.086 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds