Wall clock time and date at job start Tue Mar 31 2020 13:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.52999 * 109.47045 * 239.99996 * 2 1 3 5 5 C 1.50706 * 109.47290 * 59.99652 * 4 2 1 6 6 H 1.07999 * 119.99524 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00006 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47683 * 60.00144 * 9 7 5 11 11 H 1.48507 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47310 * 299.99794 * 9 7 5 13 13 C 1.53000 * 109.47120 * 120.00018 * 2 1 3 14 14 N 1.46499 * 109.47121 * 299.99946 * 13 2 1 15 15 C 1.34770 * 119.99917 * 180.02562 * 14 13 2 16 16 O 1.21284 * 120.00348 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00023 * 180.02562 * 15 14 13 18 18 S 1.81400 * 109.47417 * 180.02562 * 17 15 14 19 19 C 1.81392 * 103.00097 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47205 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.62264 * 270.02492 * 20 19 18 22 22 C 1.38628 * 119.16031 * 179.97438 * 21 20 19 23 23 C 1.38672 * 118.42475 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.15778 * 0.02562 * 23 22 21 25 25 N 1.31856 * 119.61279 * 89.99963 * 20 19 18 26 26 H 1.08997 * 109.46942 * 300.00172 * 1 2 3 27 27 H 1.09005 * 109.47130 * 60.00075 * 1 2 3 28 28 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46963 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47036 * 299.99983 * 3 2 1 31 31 H 1.08997 * 109.47331 * 60.00066 * 3 2 1 32 32 H 1.09000 * 109.47163 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47436 * 300.00104 * 4 2 1 34 34 H 0.97006 * 119.99755 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47204 * 179.97438 * 13 2 1 36 36 H 1.08998 * 109.46934 * 59.99702 * 13 2 1 37 37 H 0.97003 * 119.99753 * 0.02562 * 14 13 2 38 38 H 1.09000 * 109.47206 * 59.99686 * 17 15 14 39 39 H 1.09005 * 109.47020 * 300.00250 * 17 15 14 40 40 H 1.09004 * 109.47102 * 59.99862 * 19 18 17 41 41 H 1.08998 * 109.47631 * 299.99874 * 19 18 17 42 42 H 1.07995 * 120.41821 * 359.95030 * 21 20 19 43 43 H 1.08006 * 120.78822 * 180.02562 * 22 21 20 44 44 H 1.07993 * 120.42192 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.60956 * 180.27218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4798 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3993 -5.2572 10 1 1.7439 1.7994 -5.2568 11 1 1.7438 -0.3009 -6.4697 12 1 -0.2362 0.3992 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6694 16 8 2.5750 -1.4769 3.7808 17 6 1.3749 0.2193 4.8999 18 16 1.9809 -0.6348 6.3811 19 6 1.2836 0.3510 7.7347 20 6 1.7032 -0.2412 9.0554 21 6 0.9130 -1.2042 9.6543 22 6 1.3084 -1.7429 10.8689 23 6 2.4895 -1.2912 11.4381 24 6 3.2275 -0.3256 10.7806 25 7 2.8204 0.1650 9.6261 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7489 -1.2493 34 1 2.8622 -1.8819 -4.7337 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2492 37 1 0.9937 0.7578 2.3564 38 1 0.2849 0.2185 4.9000 39 1 1.7374 1.2473 4.8999 40 1 0.1959 0.3469 7.6643 41 1 1.6484 1.3757 7.6633 42 1 -0.0011 -1.5325 9.1821 43 1 0.7111 -2.4971 11.3598 44 1 2.8277 -1.6884 12.3836 45 1 4.1508 0.0283 11.2151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359754212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:54 Heat of formation + Delta-G solvation = -18.238422 kcal Electronic energy + Delta-G solvation = -23347.901996 eV Core-core repulsion = 19877.062307 eV Total energy + Delta-G solvation = -3470.839689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52600 -39.59588 -37.13248 -33.68887 -33.45689 -32.69736 -32.17638 -30.24393 -28.14557 -27.09179 -26.54742 -25.88283 -23.91909 -22.95327 -22.55513 -20.43803 -18.47228 -17.42843 -16.90633 -16.72996 -16.51447 -16.29149 -15.83765 -15.68389 -15.36007 -14.67031 -14.42893 -14.16099 -13.91576 -13.74663 -13.66012 -13.23375 -13.10296 -12.91110 -12.73049 -12.70649 -12.09449 -12.04764 -12.04547 -11.17993 -11.02403 -10.88814 -10.65401 -10.43954 -10.37611 -10.28951 -10.20508 -9.93800 -9.90498 -9.84317 -9.31871 -9.20183 -8.95675 -8.81049 -8.36915 -7.80750 -6.00915 -4.02572 0.43280 0.86636 1.44126 2.27654 2.68219 3.31092 3.34418 3.36801 3.38658 3.49224 3.76688 4.21307 4.43974 4.45196 4.61872 4.69841 4.73367 4.79750 4.89055 4.95818 5.01381 5.25261 5.33861 5.34316 5.46867 5.59178 5.68616 5.71178 5.76167 6.12863 6.18204 6.24800 6.26019 6.35524 6.50333 6.59613 6.71005 7.02610 7.04540 7.09341 7.58473 7.60762 7.63411 7.74354 7.97284 8.30163 8.39241 9.01882 9.60529 11.10412 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.001765 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.448342 B =15863.384455 C =15971.016235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.129 3.871 14 N -0.716 5.716 15 C 0.524 3.476 16 O -0.524 6.524 17 C -0.133 4.133 18 S -0.154 6.154 19 C -0.065 4.065 20 C 0.145 3.855 21 C -0.154 4.154 22 C -0.074 4.074 23 C -0.172 4.172 24 C 0.103 3.897 25 N -0.472 5.472 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.399 0.601 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 4.687 29.106 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.369 5.369 15 C 0.307 3.693 16 O -0.400 6.400 17 C -0.284 4.284 18 S 0.073 5.927 19 C -0.213 4.213 20 C 0.006 3.994 21 C -0.176 4.176 22 C -0.100 4.100 23 C -0.193 4.193 24 C -0.055 4.055 25 N -0.182 5.182 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.815 3.603 28.628 29.105 hybrid contribution -1.867 1.277 -0.634 2.349 sum -5.683 4.880 27.994 28.979 Atomic orbital electron populations 1.21765 0.95248 1.01205 1.00221 1.20917 0.95492 0.95888 0.95024 1.21767 1.00623 0.95847 1.00225 1.19088 0.96396 0.95231 0.89408 1.21137 1.31342 1.12112 0.90523 0.92316 1.25017 0.95305 0.95086 0.99096 1.69956 1.36784 1.22972 1.23576 0.86700 0.79111 0.79752 0.82649 1.20335 1.21392 1.20346 1.21675 0.99069 0.96056 0.82586 1.46100 1.53234 1.32064 1.05472 1.19556 0.81054 0.84756 0.83926 1.90758 1.37281 1.25769 1.86229 1.23574 1.05311 1.03858 0.95680 1.87848 1.69543 1.39364 0.95920 1.22331 1.03344 1.02807 0.92861 1.20301 0.90977 0.93881 0.94197 1.21972 1.01668 0.97474 0.96435 1.21611 0.95868 0.97951 0.94607 1.22203 0.96251 0.99052 1.01798 1.22780 0.99072 0.93205 0.90450 1.67437 1.13892 1.26540 1.10286 0.95287 0.91388 0.93316 0.93299 0.91389 0.95276 0.96305 0.96315 0.92959 0.91625 0.91640 0.76570 0.87232 0.87159 0.88400 0.88084 0.84397 0.84528 0.84591 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 14 N -0.72 -9.93 4.96 -60.29 -0.30 -10.23 16 15 C 0.52 7.65 7.85 -10.99 -0.09 7.56 16 16 O -0.52 -10.06 15.87 5.55 0.09 -9.97 16 17 C -0.13 -1.36 6.42 36.01 0.23 -1.12 16 18 S -0.15 -1.87 20.86 -107.50 -2.24 -4.11 16 19 C -0.07 -0.56 6.23 36.01 0.22 -0.33 16 20 C 0.14 1.39 6.04 -82.59 -0.50 0.89 16 21 C -0.15 -1.19 9.74 -39.44 -0.38 -1.58 16 22 C -0.07 -0.48 10.18 -39.28 -0.40 -0.88 16 23 C -0.17 -1.08 10.11 -39.44 -0.40 -1.48 16 24 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 25 N -0.47 -5.01 10.27 -9.47 -0.10 -5.11 16 26 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 27 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 4.47 6.16 -40.82 -0.25 4.22 16 38 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.11 0.89 8.14 -51.92 -0.42 0.46 16 40 H 0.10 0.59 8.08 -51.92 -0.42 0.18 16 41 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -33.69 382.89 -9.55 -43.24 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.00 Total: 0.71 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.49 Total: -10.79 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.34 Total: -40.90 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.24 Total: -4.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.69 -9.55 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359754212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.004 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds