Wall clock time and date at job start Tue Mar 31 2020 13:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.52999 * 109.47045 * 239.99996 * 2 1 3 5 5 C 1.50706 * 109.47290 * 59.99652 * 4 2 1 6 6 H 1.07999 * 119.99524 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00006 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47683 * 60.00144 * 9 7 5 11 11 H 1.48507 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47310 * 299.99794 * 9 7 5 13 13 C 1.53000 * 109.47120 * 120.00018 * 2 1 3 14 14 N 1.46499 * 109.47121 * 299.99946 * 13 2 1 15 15 C 1.34770 * 119.99917 * 180.02562 * 14 13 2 16 16 O 1.21284 * 120.00348 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00023 * 180.02562 * 15 14 13 18 18 S 1.81400 * 109.47417 * 180.02562 * 17 15 14 19 19 C 1.81392 * 103.00097 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47205 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.62264 * 270.02492 * 20 19 18 22 22 C 1.38628 * 119.16031 * 179.97438 * 21 20 19 23 23 C 1.38672 * 118.42475 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.15778 * 0.02562 * 23 22 21 25 25 N 1.31856 * 119.61279 * 89.99963 * 20 19 18 26 26 H 1.08997 * 109.46942 * 300.00172 * 1 2 3 27 27 H 1.09005 * 109.47130 * 60.00075 * 1 2 3 28 28 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46963 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47036 * 299.99983 * 3 2 1 31 31 H 1.08997 * 109.47331 * 60.00066 * 3 2 1 32 32 H 1.09000 * 109.47163 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47436 * 300.00104 * 4 2 1 34 34 H 0.97006 * 119.99755 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47204 * 179.97438 * 13 2 1 36 36 H 1.08998 * 109.46934 * 59.99702 * 13 2 1 37 37 H 0.97003 * 119.99753 * 0.02562 * 14 13 2 38 38 H 1.09000 * 109.47206 * 59.99686 * 17 15 14 39 39 H 1.09005 * 109.47020 * 300.00250 * 17 15 14 40 40 H 1.09004 * 109.47102 * 59.99862 * 19 18 17 41 41 H 1.08998 * 109.47631 * 299.99874 * 19 18 17 42 42 H 1.07995 * 120.41821 * 359.95030 * 21 20 19 43 43 H 1.08006 * 120.78822 * 180.02562 * 22 21 20 44 44 H 1.07993 * 120.42192 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.60956 * 180.27218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4798 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3993 -5.2572 10 1 1.7439 1.7994 -5.2568 11 1 1.7438 -0.3009 -6.4697 12 1 -0.2362 0.3992 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6694 16 8 2.5750 -1.4769 3.7808 17 6 1.3749 0.2193 4.8999 18 16 1.9809 -0.6348 6.3811 19 6 1.2836 0.3510 7.7347 20 6 1.7032 -0.2412 9.0554 21 6 0.9130 -1.2042 9.6543 22 6 1.3084 -1.7429 10.8689 23 6 2.4895 -1.2912 11.4381 24 6 3.2275 -0.3256 10.7806 25 7 2.8204 0.1650 9.6261 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7489 -1.2493 34 1 2.8622 -1.8819 -4.7337 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2492 37 1 0.9937 0.7578 2.3564 38 1 0.2849 0.2185 4.9000 39 1 1.7374 1.2473 4.8999 40 1 0.1959 0.3469 7.6643 41 1 1.6484 1.3757 7.6633 42 1 -0.0011 -1.5325 9.1821 43 1 0.7111 -2.4971 11.3598 44 1 2.8277 -1.6884 12.3836 45 1 4.1508 0.0283 11.2151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359754212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:53 Heat of formation + Delta-G solvation = -39.492986 kcal Electronic energy + Delta-G solvation = -23348.823663 eV Core-core repulsion = 19877.062307 eV Total energy + Delta-G solvation = -3471.761356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07471 -40.85653 -38.65218 -35.27469 -34.04534 -33.96127 -33.24596 -31.26300 -29.03715 -28.71270 -27.94954 -27.28189 -24.81204 -24.44827 -23.18421 -21.66721 -19.95238 -18.40281 -18.28131 -17.83034 -17.44735 -17.17956 -16.78092 -16.59604 -16.41047 -16.33526 -15.45243 -15.35429 -15.09456 -14.64311 -14.47827 -14.37045 -14.29359 -14.03712 -13.92832 -13.72495 -13.54279 -13.28883 -12.82401 -12.75064 -12.58549 -12.56992 -12.31794 -12.22209 -12.00336 -11.53125 -11.26729 -11.07750 -10.92239 -10.83178 -10.79830 -10.50401 -10.42094 -10.12017 -9.88326 -8.69004 -8.13481 -6.21631 -0.19172 0.33570 0.73994 1.43040 1.45177 1.52398 1.55431 1.55516 2.21489 2.45478 2.92818 3.20818 3.22747 3.68504 3.74741 3.98498 4.01525 4.05822 4.13074 4.15282 4.22891 4.23035 4.29142 4.39504 4.43532 4.69117 4.72248 4.74441 4.79167 4.84384 4.97320 5.10602 5.13611 5.19857 5.27241 5.38173 5.45665 5.51369 5.54412 5.57299 5.77242 5.80938 5.90225 6.30013 6.51095 6.93566 7.02178 7.20124 7.46188 8.98760 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.001765 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.448342 B =15863.384455 C =15971.016235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.143 3.857 14 N -0.701 5.701 15 C 0.520 3.480 16 O -0.576 6.576 17 C -0.111 4.111 18 S -0.234 6.234 19 C -0.042 4.042 20 C 0.117 3.883 21 C -0.161 4.161 22 C -0.079 4.079 23 C -0.168 4.168 24 C 0.083 3.917 25 N -0.508 5.508 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.073 0.927 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.417 0.583 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 6.927 31.034 32.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.355 5.355 15 C 0.306 3.694 16 O -0.456 6.456 17 C -0.261 4.261 18 S -0.008 6.008 19 C -0.190 4.190 20 C -0.021 4.021 21 C -0.182 4.182 22 C -0.105 4.105 23 C -0.188 4.188 24 C -0.074 4.074 25 N -0.218 5.218 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.002 0.998 33 H 0.003 0.997 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.256 0.744 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.183 0.817 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.281 5.895 30.567 31.758 hybrid contribution -1.069 0.523 -1.102 1.622 sum -7.350 6.418 29.465 31.038 Atomic orbital electron populations 1.21701 0.93327 1.01018 1.01855 1.20713 0.96896 0.96316 0.92577 1.21707 0.99853 0.94553 1.01843 1.18978 0.94204 0.94214 0.92467 1.21571 1.30506 1.12138 0.91028 0.90783 1.25977 0.95683 0.95886 1.02817 1.70124 1.38727 1.25002 1.24127 0.85575 0.78970 0.78715 0.78217 1.19124 1.21834 1.19065 1.21215 0.97728 0.95413 0.83828 1.45820 1.53166 1.32243 1.04261 1.20314 0.79923 0.84118 0.85017 1.90749 1.39560 1.28267 1.87017 1.23474 1.07197 1.03787 0.91686 1.88167 1.71287 1.42010 0.99291 1.22306 1.04511 1.01619 0.90528 1.20555 0.91475 0.95159 0.94862 1.22246 1.02069 0.96918 0.96979 1.22036 0.96120 0.98120 0.94240 1.22556 0.95777 0.97954 1.02529 1.23201 1.00092 0.93908 0.90245 1.67394 1.14810 1.27955 1.11639 0.90745 0.92551 0.94491 0.94619 0.92525 0.90791 0.99764 0.99668 0.93217 0.93789 0.93603 0.74432 0.83508 0.84215 0.85620 0.87839 0.82820 0.81772 0.81725 0.80872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.39 7.65 25.60 0.20 -27.19 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 9 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 13 C 0.14 5.02 4.56 86.38 0.39 5.41 16 14 N -0.70 -17.99 4.96 -463.07 -2.30 -20.28 16 15 C 0.52 14.47 7.85 87.66 0.69 15.16 16 16 O -0.58 -22.52 15.87 -3.04 -0.05 -22.57 16 17 C -0.11 -1.93 6.42 71.24 0.46 -1.47 16 18 S -0.23 -5.49 20.86 -56.49 -1.18 -6.67 16 19 C -0.04 -0.64 6.23 71.24 0.44 -0.20 16 20 C 0.12 2.14 6.04 42.55 0.26 2.39 16 21 C -0.16 -2.22 9.74 22.36 0.22 -2.01 16 22 C -0.08 -0.85 10.18 22.47 0.23 -0.62 16 23 C -0.17 -1.79 10.11 22.36 0.23 -1.56 16 24 C 0.08 1.25 11.18 84.67 0.95 2.20 16 25 N -0.51 -10.57 10.27 -183.88 -1.89 -12.46 16 26 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 27 H 0.06 1.95 6.62 -2.38 -0.02 1.93 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.97 6.62 -2.38 -0.02 1.96 16 31 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 7.55 6.16 -92.71 -0.57 6.97 16 38 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.13 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 44 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 45 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -78.95 382.89 3.08 -75.87 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.41 Total: 12.49 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.77 Total: -14.81 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -3.90 Total: -89.73 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -1.18 Total: -6.67 kcal Total: -78.95 3.08 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359754212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.374 kcal (2) G-P(sol) polarization free energy of solvation -78.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds