Wall clock time and date at job start Tue Mar 31 2020 13:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.46656 * 2 1 4 4 N 1.28665 * 124.92819 * 89.98187 * 3 2 1 5 5 C 1.32529 * 117.87802 * 180.02562 * 4 3 2 6 6 C 1.34610 * 113.15775 * 0.02562 * 5 4 3 7 7 S 1.70917 * 124.92942 * 269.99635 * 3 2 1 8 8 C 1.51002 * 125.22791 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.61977 * 103.67550 * 8 6 5 10 10 N 1.46498 * 109.61815 * 224.21549 * 8 6 5 11 11 C 1.46510 * 120.00001 * 59.99264 * 10 8 6 12 12 C 1.34775 * 120.00187 * 240.00132 * 10 8 6 13 13 O 1.21282 * 119.99796 * 359.97438 * 12 10 8 14 14 C 1.50703 * 120.00064 * 180.02562 * 12 10 8 15 15 C 1.53001 * 109.46676 * 179.97438 * 14 12 10 16 16 C 1.50703 * 109.46676 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00376 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00088 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00174 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47593 * 89.99945 * 20 18 16 22 22 H 1.48505 * 109.47148 * 209.99824 * 20 18 16 23 23 H 1.48499 * 109.46808 * 329.99589 * 20 18 16 24 24 C 1.53278 * 108.57950 * 343.94104 * 8 6 5 25 25 C 1.53142 * 109.00126 * 49.25974 * 24 8 6 26 26 C 1.52129 * 124.19980 * 180.02562 * 5 4 3 27 27 H 1.08992 * 109.47234 * 60.00185 * 1 2 3 28 28 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47372 * 299.99819 * 1 2 3 30 30 H 1.08998 * 109.46643 * 240.00117 * 2 1 3 31 31 H 1.08998 * 109.46851 * 120.00371 * 2 1 3 32 32 H 1.08997 * 109.46379 * 90.00395 * 11 10 8 33 33 H 1.08994 * 109.46840 * 209.99824 * 11 10 8 34 34 H 1.08991 * 109.47234 * 330.00681 * 11 10 8 35 35 H 1.08996 * 109.47228 * 299.99343 * 14 12 10 36 36 H 1.09000 * 109.47252 * 59.99748 * 14 12 10 37 37 H 1.09008 * 109.47181 * 299.99393 * 15 14 12 38 38 H 1.08992 * 109.47722 * 59.99781 * 15 14 12 39 39 H 0.96994 * 119.99990 * 180.02562 * 19 18 16 40 40 H 1.08992 * 109.55223 * 289.39551 * 24 8 6 41 41 H 1.09005 * 109.62263 * 169.15759 * 24 8 6 42 42 H 1.08995 * 109.47725 * 169.62622 * 25 24 8 43 43 H 1.09003 * 109.48338 * 49.61138 * 25 24 8 44 44 H 1.09003 * 109.59847 * 282.18389 * 26 5 4 45 45 H 1.09004 * 109.59401 * 42.64301 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2775 2.1155 1.0549 5 6 2.7153 3.3557 0.8922 6 6 2.8392 3.7080 -0.4010 7 16 2.3585 2.3434 -1.4013 8 6 3.3136 5.0536 -0.8956 9 1 4.3428 4.9730 -1.2451 10 7 2.4526 5.5065 -1.9910 11 6 1.0184 5.7011 -1.7630 12 6 2.9796 5.7439 -3.2084 13 8 4.1668 5.5831 -3.3971 14 6 2.0940 6.2103 -4.3350 15 6 2.9353 6.4045 -5.5981 16 6 2.0496 6.8703 -6.7249 17 1 0.9923 7.0132 -6.5570 18 6 2.5890 7.1141 -7.9701 19 7 1.8160 7.5201 -8.9536 20 14 4.4176 6.8663 -8.2607 21 1 4.6641 5.4699 -8.7014 22 1 4.8837 7.8065 -9.3115 23 1 5.1587 7.1258 -7.0002 24 6 3.2403 6.0536 0.2637 25 6 3.9156 5.4409 1.4941 26 6 3.0497 4.3014 2.0360 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.8379 6.7263 -1.4401 33 1 0.4744 5.5103 -2.6880 34 1 0.6764 5.0115 -0.9913 35 1 1.3222 5.4641 -4.5233 36 1 1.6260 7.1561 -4.0617 37 1 3.7069 7.1510 -5.4096 38 1 3.4037 5.4591 -5.8717 39 1 2.1955 7.6913 -9.8297 40 1 2.1972 6.2726 0.4912 41 1 3.7541 6.9740 -0.0139 42 1 4.0331 6.2050 2.2624 43 1 4.8951 5.0521 1.2154 44 1 2.1294 4.7092 2.4542 45 1 3.5971 3.7614 2.8086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361938499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:06 Heat of formation + Delta-G solvation = -14.386622 kcal Electronic energy + Delta-G solvation = -25144.466201 eV Core-core repulsion = 21673.793539 eV Total energy + Delta-G solvation = -3470.672662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63911 -39.47109 -37.07024 -34.85621 -33.70026 -33.51039 -31.48713 -30.06259 -29.16305 -26.83068 -26.16069 -25.47000 -23.66150 -22.65238 -21.10885 -20.96109 -18.91331 -18.56466 -18.04215 -17.24245 -16.40127 -15.94170 -15.70873 -15.09073 -15.05352 -14.55833 -14.48710 -14.13012 -14.03010 -13.69569 -13.37363 -13.18834 -12.98811 -12.78791 -12.58709 -12.40787 -12.35130 -12.13689 -11.96192 -11.87760 -11.52825 -11.38559 -11.27381 -11.06094 -10.97419 -10.88937 -10.16454 -10.05074 -9.80578 -9.73495 -9.42374 -9.22308 -9.15995 -8.73823 -8.60543 -8.51398 -6.04005 -4.02807 0.54349 1.21563 1.69124 2.55188 2.98932 3.14180 3.37086 3.43770 3.54492 3.72359 4.46747 4.49131 4.50024 4.62238 4.70281 4.76947 4.85660 4.89365 5.04384 5.10176 5.17423 5.30402 5.31472 5.33249 5.37525 5.45907 5.48555 5.57425 5.60993 5.67907 5.70686 5.78323 5.81012 5.84597 6.00451 6.03700 6.06437 6.09012 6.54401 6.66160 7.34377 7.41367 7.51328 7.60403 7.77639 8.45176 8.55226 8.98752 9.59065 11.08803 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.003339 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.901158 B = 8383.527423 C = 9307.558530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.042 3.958 4 N -0.475 5.475 5 C 0.070 3.930 6 C -0.234 4.234 7 S 0.148 5.852 8 C 0.218 3.782 9 H 0.115 0.885 10 N -0.622 5.622 11 C 0.080 3.920 12 C 0.513 3.487 13 O -0.536 6.536 14 C -0.119 4.119 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.037 4.037 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -10.781 24.323 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.236 4.236 4 N -0.190 5.190 5 C -0.063 4.063 6 C -0.357 4.357 7 S 0.407 5.593 8 C 0.111 3.889 9 H 0.132 0.868 10 N -0.357 5.357 11 C -0.063 4.063 12 C 0.304 3.696 13 O -0.412 6.412 14 C -0.159 4.159 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.077 4.077 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.308 -11.295 23.388 26.005 hybrid contribution 0.944 0.364 0.419 1.095 sum -0.364 -10.931 23.807 26.199 Atomic orbital electron populations 1.21764 0.93470 1.02530 1.02718 1.20205 0.96776 0.87597 1.04117 1.26870 1.03459 1.01774 0.91546 1.65832 1.14951 1.05914 1.32256 1.20866 1.00977 0.91048 0.93401 1.26469 1.11713 1.01340 0.96128 1.84303 1.59667 1.04208 1.11163 1.19400 0.96033 0.86356 0.87087 0.86758 1.48135 1.08842 1.68608 1.10095 1.21743 0.80512 1.01243 1.02825 1.21671 0.89382 0.75611 0.82961 1.90645 1.16763 1.51439 1.82317 1.21704 0.98779 1.01752 0.93634 1.19382 0.95518 0.97399 0.91327 1.21095 0.96184 1.45380 0.93572 0.90935 1.24965 0.97902 0.94361 0.95955 1.69910 1.35579 1.46539 1.02188 0.86808 0.86183 0.78243 0.78402 1.20229 1.21424 1.18543 1.21947 1.02178 0.98229 0.93852 1.21564 0.99180 0.97392 0.97423 1.20360 1.00411 0.93263 0.93651 0.92250 0.91404 0.92042 0.89686 0.88975 0.92394 0.90117 0.91869 0.89565 0.89475 0.95831 0.96317 0.92709 0.90878 0.90269 0.90303 0.91175 0.90018 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 37.16 0.37 -0.67 16 2 C -0.05 -0.37 6.52 -27.88 -0.18 -0.56 16 3 C 0.04 0.47 6.64 -13.61 -0.09 0.38 16 4 N -0.48 -5.91 10.51 -7.33 -0.08 -5.99 16 5 C 0.07 0.82 6.78 -82.87 -0.56 0.26 16 6 C -0.23 -2.93 4.97 -35.44 -0.18 -3.10 16 7 S 0.15 1.83 23.06 -107.50 -2.48 -0.65 16 8 C 0.22 2.80 2.88 -68.79 -0.20 2.60 16 9 H 0.11 1.73 6.92 -51.93 -0.36 1.37 16 10 N -0.62 -8.75 2.68 -174.93 -0.47 -9.22 16 11 C 0.08 0.88 9.09 59.85 0.54 1.43 16 12 C 0.51 9.39 7.67 -10.98 -0.08 9.31 16 13 O -0.54 -11.76 15.32 5.56 0.09 -11.67 16 14 C -0.12 -2.31 4.19 -27.88 -0.12 -2.42 16 15 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 16 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 20 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 24 C -0.12 -1.20 5.39 -26.51 -0.14 -1.34 16 25 C -0.12 -0.95 5.87 -26.64 -0.16 -1.10 16 26 C -0.04 -0.33 6.29 -27.16 -0.17 -0.50 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.89 6.44 -51.93 -0.33 0.55 16 34 H 0.06 0.64 7.28 -51.93 -0.38 0.26 16 35 H 0.09 1.55 7.40 -51.93 -0.38 1.17 16 36 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 37 H 0.02 0.61 7.16 -51.92 -0.37 0.24 16 38 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.07 0.66 7.30 -51.93 -0.38 0.29 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -34.27 372.34 -9.97 -44.24 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -7.25 Total: -4.00 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.49 Total: -9.07 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.23 Total: -42.36 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.48 Total: -0.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.27 -9.97 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361938499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.851 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds