Wall clock time and date at job start Tue Mar 31 2020 13:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.46656 * 2 1 4 4 N 1.28665 * 124.92819 * 89.98187 * 3 2 1 5 5 C 1.32529 * 117.87802 * 180.02562 * 4 3 2 6 6 C 1.34610 * 113.15775 * 0.02562 * 5 4 3 7 7 S 1.70917 * 124.92942 * 269.99635 * 3 2 1 8 8 C 1.51002 * 125.22791 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.61977 * 103.67550 * 8 6 5 10 10 N 1.46498 * 109.61815 * 224.21549 * 8 6 5 11 11 C 1.46510 * 120.00001 * 59.99264 * 10 8 6 12 12 C 1.34775 * 120.00187 * 240.00132 * 10 8 6 13 13 O 1.21282 * 119.99796 * 359.97438 * 12 10 8 14 14 C 1.50703 * 120.00064 * 180.02562 * 12 10 8 15 15 C 1.53001 * 109.46676 * 179.97438 * 14 12 10 16 16 C 1.50703 * 109.46676 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00376 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00088 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00174 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47593 * 89.99945 * 20 18 16 22 22 H 1.48505 * 109.47148 * 209.99824 * 20 18 16 23 23 H 1.48499 * 109.46808 * 329.99589 * 20 18 16 24 24 C 1.53278 * 108.57950 * 343.94104 * 8 6 5 25 25 C 1.53142 * 109.00126 * 49.25974 * 24 8 6 26 26 C 1.52129 * 124.19980 * 180.02562 * 5 4 3 27 27 H 1.08992 * 109.47234 * 60.00185 * 1 2 3 28 28 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47372 * 299.99819 * 1 2 3 30 30 H 1.08998 * 109.46643 * 240.00117 * 2 1 3 31 31 H 1.08998 * 109.46851 * 120.00371 * 2 1 3 32 32 H 1.08997 * 109.46379 * 90.00395 * 11 10 8 33 33 H 1.08994 * 109.46840 * 209.99824 * 11 10 8 34 34 H 1.08991 * 109.47234 * 330.00681 * 11 10 8 35 35 H 1.08996 * 109.47228 * 299.99343 * 14 12 10 36 36 H 1.09000 * 109.47252 * 59.99748 * 14 12 10 37 37 H 1.09008 * 109.47181 * 299.99393 * 15 14 12 38 38 H 1.08992 * 109.47722 * 59.99781 * 15 14 12 39 39 H 0.96994 * 119.99990 * 180.02562 * 19 18 16 40 40 H 1.08992 * 109.55223 * 289.39551 * 24 8 6 41 41 H 1.09005 * 109.62263 * 169.15759 * 24 8 6 42 42 H 1.08995 * 109.47725 * 169.62622 * 25 24 8 43 43 H 1.09003 * 109.48338 * 49.61138 * 25 24 8 44 44 H 1.09003 * 109.59847 * 282.18389 * 26 5 4 45 45 H 1.09004 * 109.59401 * 42.64301 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2775 2.1155 1.0549 5 6 2.7153 3.3557 0.8922 6 6 2.8392 3.7080 -0.4010 7 16 2.3585 2.3434 -1.4013 8 6 3.3136 5.0536 -0.8956 9 1 4.3428 4.9730 -1.2451 10 7 2.4526 5.5065 -1.9910 11 6 1.0184 5.7011 -1.7630 12 6 2.9796 5.7439 -3.2084 13 8 4.1668 5.5831 -3.3971 14 6 2.0940 6.2103 -4.3350 15 6 2.9353 6.4045 -5.5981 16 6 2.0496 6.8703 -6.7249 17 1 0.9923 7.0132 -6.5570 18 6 2.5890 7.1141 -7.9701 19 7 1.8160 7.5201 -8.9536 20 14 4.4176 6.8663 -8.2607 21 1 4.6641 5.4699 -8.7014 22 1 4.8837 7.8065 -9.3115 23 1 5.1587 7.1258 -7.0002 24 6 3.2403 6.0536 0.2637 25 6 3.9156 5.4409 1.4941 26 6 3.0497 4.3014 2.0360 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.8379 6.7263 -1.4401 33 1 0.4744 5.5103 -2.6880 34 1 0.6764 5.0115 -0.9913 35 1 1.3222 5.4641 -4.5233 36 1 1.6260 7.1561 -4.0617 37 1 3.7069 7.1510 -5.4096 38 1 3.4037 5.4591 -5.8717 39 1 2.1955 7.6913 -9.8297 40 1 2.1972 6.2726 0.4912 41 1 3.7541 6.9740 -0.0139 42 1 4.0331 6.2050 2.2624 43 1 4.8951 5.0521 1.2154 44 1 2.1294 4.7092 2.4542 45 1 3.5971 3.7614 2.8086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361938499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:05 Heat of formation + Delta-G solvation = -34.897035 kcal Electronic energy + Delta-G solvation = -25145.355600 eV Core-core repulsion = 21673.793539 eV Total energy + Delta-G solvation = -3471.562061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63957 -40.69351 -38.10084 -35.91395 -35.58830 -34.36672 -33.38071 -31.16124 -29.96097 -28.15540 -27.68472 -26.22608 -24.72898 -23.62053 -22.64929 -21.85332 -20.28900 -19.49476 -19.17980 -18.88017 -17.90143 -17.07412 -16.93654 -16.30835 -16.16063 -15.78923 -15.52486 -15.25347 -14.88534 -14.80991 -14.73502 -14.43615 -14.34758 -13.90391 -13.74721 -13.54818 -13.47432 -13.19671 -12.98393 -12.92252 -12.69507 -12.56228 -12.16284 -12.11984 -12.00465 -11.99351 -11.79820 -11.76958 -11.68211 -11.40926 -10.86111 -10.78915 -10.59942 -10.27908 -9.82249 -9.57203 -8.32328 -6.35086 -0.36719 0.30961 0.78338 1.31937 1.34005 1.48868 1.56198 1.64130 2.00479 2.33943 2.94255 3.03354 3.51706 3.71120 3.80470 3.87223 3.95124 4.05819 4.15446 4.22681 4.28345 4.32264 4.36458 4.41342 4.44276 4.54010 4.65051 4.69800 4.79128 4.88570 4.93401 4.95562 4.95991 4.99693 5.06180 5.10614 5.24675 5.28359 5.30678 5.32294 5.41437 5.50420 5.59139 6.20935 6.27746 6.69769 6.70805 7.12258 7.30290 8.83300 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.003339 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.901158 B = 8383.527423 C = 9307.558530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.057 3.943 4 N -0.494 5.494 5 C 0.073 3.927 6 C -0.250 4.250 7 S 0.108 5.892 8 C 0.217 3.783 9 H 0.085 0.915 10 N -0.609 5.609 11 C 0.074 3.926 12 C 0.515 3.485 13 O -0.581 6.581 14 C -0.112 4.112 15 C 0.007 3.993 16 C -0.527 4.527 17 H 0.051 0.949 18 C 0.016 3.984 19 N -0.942 5.942 20 Si 0.936 3.064 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.116 4.116 25 C -0.110 4.110 26 C -0.036 4.036 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.010 0.990 38 H 0.006 0.994 39 H 0.267 0.733 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -11.317 26.775 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.221 4.221 4 N -0.208 5.208 5 C -0.059 4.059 6 C -0.372 4.372 7 S 0.366 5.634 8 C 0.111 3.889 9 H 0.103 0.897 10 N -0.342 5.342 11 C -0.067 4.067 12 C 0.306 3.694 13 O -0.461 6.461 14 C -0.151 4.151 15 C -0.031 4.031 16 C -0.565 4.565 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.583 5.583 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.156 4.156 25 C -0.148 4.148 26 C -0.075 4.075 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.571 -11.830 25.885 28.503 hybrid contribution 0.913 0.457 -0.262 1.054 sum -0.658 -11.373 25.623 28.041 Atomic orbital electron populations 1.21738 0.92497 1.03734 1.02028 1.20411 0.97491 0.85831 1.05226 1.27435 1.01689 1.02542 0.90474 1.65945 1.16027 1.06396 1.32455 1.21395 0.99414 0.91154 0.93956 1.26352 1.13555 1.00956 0.96327 1.84424 1.60636 1.05534 1.12759 1.19461 0.94202 0.87749 0.87449 0.89695 1.48052 1.10264 1.66805 1.09060 1.21974 0.78380 1.02962 1.03420 1.21320 0.88442 0.75669 0.83985 1.90628 1.18369 1.53826 1.83258 1.21515 0.98346 1.03248 0.92036 1.19216 0.95209 0.95967 0.92723 1.21396 0.95789 1.44618 0.94734 0.93040 1.25769 1.02131 0.94366 0.95957 1.70017 1.37500 1.47951 1.02824 0.85868 0.81098 0.78645 0.78346 1.19452 1.20243 1.18659 1.21936 1.03262 0.97195 0.93182 1.21552 0.98286 0.97778 0.97219 1.20507 1.01358 0.92867 0.92773 0.92825 0.89291 0.92788 0.88387 0.87986 0.90160 0.90050 0.90625 0.88209 0.87830 0.97167 0.97555 0.92353 0.89518 0.90417 0.87490 0.92056 0.88376 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.90 71.98 0.71 -1.03 16 2 C -0.05 -0.71 6.52 29.85 0.19 -0.51 16 3 C 0.06 1.22 6.64 88.57 0.59 1.80 16 4 N -0.49 -11.50 10.51 -177.09 -1.86 -13.36 16 5 C 0.07 1.60 6.78 42.08 0.29 1.88 16 6 C -0.25 -6.05 4.97 24.95 0.12 -5.92 16 7 S 0.11 2.64 23.06 -56.49 -1.30 1.34 16 8 C 0.22 5.46 2.88 44.43 0.13 5.59 16 9 H 0.09 2.65 6.92 -2.39 -0.02 2.63 16 10 N -0.61 -16.64 2.68 -825.74 -2.21 -18.85 16 11 C 0.07 1.50 9.09 127.77 1.16 2.66 16 12 C 0.52 18.87 7.67 87.66 0.67 19.55 16 13 O -0.58 -26.07 15.32 -3.03 -0.05 -26.11 16 14 C -0.11 -4.30 4.19 29.85 0.13 -4.18 16 15 C 0.01 0.34 3.33 29.85 0.10 0.44 16 16 C -0.53 -30.45 9.66 25.60 0.25 -30.21 16 17 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 18 C 0.02 0.93 5.47 84.65 0.46 1.39 16 19 N -0.94 -58.97 13.96 21.45 0.30 -58.68 16 20 Si 0.94 46.97 27.47 68.60 1.88 48.86 16 21 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.26 -13.12 6.54 99.48 0.65 -12.47 16 24 C -0.12 -2.04 5.39 30.74 0.17 -1.87 16 25 C -0.11 -1.49 5.87 30.65 0.18 -1.31 16 26 C -0.04 -0.53 6.29 30.32 0.19 -0.33 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.65 6.44 -2.39 -0.02 1.63 16 34 H 0.08 1.37 7.28 -2.39 -0.02 1.35 16 35 H 0.10 3.54 7.40 -2.39 -0.02 3.52 16 36 H 0.10 3.61 8.11 -2.39 -0.02 3.59 16 37 H 0.01 0.53 7.16 -2.38 -0.02 0.51 16 38 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 40 H 0.09 1.30 7.30 -2.39 -0.02 1.28 16 41 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.08 372.34 3.02 -72.06 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.92 Total: 6.79 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.34 Total: -12.06 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.77 Total: -90.89 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.88 Total: 48.86 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.30 Total: 1.34 kcal Total: -75.08 3.02 -72.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361938499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.167 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds