Wall clock time and date at job start Tue Mar 31 2020 14:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47524 * 2 1 4 4 C 1.50706 * 109.47237 * 239.99723 * 2 1 3 5 5 H 1.07995 * 120.00169 * 240.00065 * 4 2 1 6 6 C 1.37878 * 119.99479 * 59.99996 * 4 2 1 7 7 N 1.31515 * 120.00437 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47102 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 120.00084 * 8 6 4 11 11 H 1.48501 * 109.47057 * 240.00065 * 8 6 4 12 12 C 1.53002 * 109.46978 * 120.00303 * 2 1 3 13 13 N 1.46496 * 109.47045 * 299.99399 * 12 2 1 14 14 C 1.34784 * 120.00155 * 179.97438 * 13 12 2 15 15 O 1.21350 * 119.99452 * 0.02562 * 14 13 12 16 16 C 1.49446 * 119.99947 * 180.02562 * 14 13 12 17 17 O 1.21345 * 120.00194 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99676 * 180.02562 * 16 14 13 19 19 C 1.46506 * 120.00072 * 180.02562 * 18 16 14 20 20 C 1.50703 * 109.47289 * 179.97438 * 19 18 16 21 21 C 1.38218 * 120.01072 * 105.00098 * 20 19 18 22 22 C 1.38214 * 120.02377 * 179.97438 * 21 20 19 23 23 C 1.38265 * 120.05476 * 0.02562 * 22 21 20 24 24 C 1.38180 * 120.02127 * 0.02562 * 23 22 21 25 25 C 1.38437 * 120.01312 * 284.72220 * 20 19 18 26 26 F 1.35097 * 120.02358 * 0.02562 * 25 20 19 27 27 H 1.09002 * 109.47045 * 299.99864 * 1 2 3 28 28 H 1.09000 * 109.47140 * 59.99771 * 1 2 3 29 29 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47772 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47099 * 300.00254 * 3 2 1 32 32 H 1.09002 * 109.47374 * 60.00021 * 3 2 1 33 33 H 0.96999 * 120.00397 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47006 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47600 * 60.00041 * 12 2 1 36 36 H 0.97002 * 120.00100 * 0.02562 * 13 12 2 37 37 H 0.97001 * 120.00676 * 359.97438 * 18 16 14 38 38 H 1.09001 * 109.47060 * 300.00359 * 19 18 16 39 39 H 1.09004 * 109.47073 * 59.99848 * 19 18 16 40 40 H 1.08006 * 119.98901 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.97625 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.99394 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.00951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6696 15 8 2.5744 -1.4782 3.7808 16 6 1.3783 0.2127 4.8898 17 8 0.6804 1.1991 4.7784 18 7 1.7039 -0.2478 6.1138 19 6 1.2147 0.4422 7.3101 20 6 1.7167 -0.2685 8.5405 21 6 2.7445 0.2797 9.2846 22 6 3.2047 -0.3716 10.4134 23 6 2.6381 -1.5723 10.7995 24 6 1.6113 -2.1228 10.0566 25 6 1.1447 -1.4677 8.9293 26 9 0.1367 -2.0018 8.2057 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.7095 1.1618 -3.4844 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9938 0.7578 2.3564 37 1 2.2615 -1.0365 6.2029 38 1 1.5773 1.4702 7.3104 39 1 0.1247 0.4414 7.3098 40 1 3.1881 1.2173 8.9838 41 1 4.0081 0.0572 10.9940 42 1 2.9988 -2.0806 11.6815 43 1 1.1691 -3.0609 10.3581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420687268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:39 Heat of formation + Delta-G solvation = -97.004910 kcal Electronic energy + Delta-G solvation = -26366.637039 eV Core-core repulsion = 22326.168603 eV Total energy + Delta-G solvation = -4040.468436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25066 -40.46543 -39.50764 -38.29606 -36.47746 -35.35815 -33.32647 -31.88983 -30.93255 -30.88252 -27.36555 -25.89840 -25.71432 -25.17983 -23.27751 -23.15327 -21.83850 -20.23289 -19.03595 -18.44442 -17.87596 -16.91053 -16.73399 -16.26235 -15.97178 -15.77577 -15.70714 -15.19080 -14.88126 -14.64315 -14.43086 -14.34939 -13.65875 -13.54278 -13.41750 -13.05225 -12.92878 -12.73276 -12.58294 -12.21528 -12.06712 -11.49531 -11.46048 -11.39467 -11.18344 -10.88866 -10.66857 -10.39545 -10.19779 -9.69549 -9.64627 -9.48304 -9.37985 -9.25738 -9.08109 -8.78612 -8.59326 -8.36927 -6.02230 -4.12884 0.57427 0.72076 1.65598 2.57188 3.15235 3.27336 3.36026 3.40237 3.47814 3.80512 3.98753 4.05636 4.26298 4.39738 4.47451 4.71574 4.81454 4.82950 5.12166 5.22790 5.24448 5.40913 5.56300 5.65965 5.82822 5.90271 6.06184 6.12257 6.24446 6.38769 6.47878 6.64053 6.83180 6.86019 6.94895 7.01270 7.07953 7.34095 7.55913 7.66656 7.71165 7.96575 8.00803 8.13328 8.33063 8.42014 8.87597 9.53000 10.99210 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.002199 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.884692 B =12730.613491 C =12887.795739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.535 6.535 16 C 0.510 3.490 17 O -0.519 6.519 18 N -0.702 5.702 19 C 0.162 3.838 20 C -0.145 4.145 21 C -0.070 4.070 22 C -0.133 4.133 23 C -0.083 4.083 24 C -0.157 4.157 25 C 0.118 3.882 26 F -0.131 7.131 27 H 0.009 0.991 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -1.097 26.306 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.276 3.724 15 O -0.413 6.413 16 C 0.291 3.709 17 O -0.394 6.394 18 N -0.357 5.357 19 C 0.039 3.961 20 C -0.146 4.146 21 C -0.088 4.088 22 C -0.151 4.151 23 C -0.101 4.101 24 C -0.176 4.176 25 C 0.098 3.902 26 F -0.109 7.109 27 H 0.028 0.972 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.249 0.751 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.123 -0.976 26.075 26.180 hybrid contribution 0.107 -0.600 -0.878 1.069 sum 2.230 -1.575 25.197 25.345 Atomic orbital electron populations 1.21857 0.97572 0.99305 1.00406 1.18393 0.93003 0.92886 0.90288 1.21853 0.98610 0.98248 1.00406 1.20985 1.31567 1.12136 0.89746 0.92297 1.24891 0.94851 0.94930 0.98896 1.69817 1.36577 1.22686 1.23185 0.86501 0.78619 0.79712 0.82949 1.19764 1.21058 1.21067 1.21947 0.98551 0.96053 0.82828 1.46217 1.50415 1.31392 1.05105 1.19912 0.82426 0.85219 0.84870 1.90727 1.37917 1.25902 1.86741 1.20497 0.80930 0.84667 0.84836 1.90756 1.36439 1.25429 1.86791 1.45761 1.53156 1.32389 1.04376 1.20170 1.00030 0.95784 0.80132 1.19947 0.99637 0.95830 0.99191 1.21055 0.93998 0.99815 0.93969 1.21250 1.00785 0.95755 0.97291 1.21112 0.94683 0.95296 0.99030 1.21213 0.99483 1.01607 0.95248 1.17641 0.87877 0.92983 0.91723 1.91554 1.57298 1.85522 1.76560 0.97249 0.89432 0.95336 0.95346 0.89430 0.97257 0.92999 0.91985 0.91991 0.75170 0.75070 0.89461 0.89761 0.84532 0.84966 0.84803 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.08 37.16 0.30 -2.79 16 2 C 0.05 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -3.07 8.08 37.15 0.30 -2.77 16 4 C -0.51 -13.18 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 13 N -0.68 -12.82 4.95 -60.73 -0.30 -13.12 16 14 C 0.50 8.91 7.89 -11.58 -0.09 8.82 16 15 O -0.53 -10.48 16.48 5.50 0.09 -10.39 16 16 C 0.51 8.00 7.89 -11.59 -0.09 7.91 16 17 O -0.52 -9.05 16.48 5.50 0.09 -8.96 16 18 N -0.70 -8.76 5.54 -61.90 -0.34 -9.10 16 19 C 0.16 1.63 5.49 -5.19 -0.03 1.60 16 20 C -0.14 -1.24 5.25 -104.55 -0.55 -1.79 16 21 C -0.07 -0.46 9.67 -39.60 -0.38 -0.84 16 22 C -0.13 -0.72 10.04 -39.58 -0.40 -1.12 16 23 C -0.08 -0.46 10.04 -39.59 -0.40 -0.85 16 24 C -0.16 -1.11 10.03 -39.52 -0.40 -1.51 16 25 C 0.12 1.08 7.25 -39.42 -0.29 0.79 16 26 F -0.13 -1.46 16.75 2.25 0.04 -1.43 16 27 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 32 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.41 7.61 5.64 -40.82 -0.23 7.38 16 37 H 0.41 4.94 7.94 -40.82 -0.32 4.62 16 38 H 0.09 0.80 7.95 -51.93 -0.41 0.38 16 39 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.14 0.68 8.00 -52.48 -0.42 0.26 16 41 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 43 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -29.48 364.54 -7.57 -37.05 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.65 Total: 8.41 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.48 Total: -0.46 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.13 Total: -45.38 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.48 -7.57 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420687268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.958 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds