Wall clock time and date at job start Tue Mar 31 2020 14:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47524 * 2 1 4 4 C 1.50706 * 109.47237 * 239.99723 * 2 1 3 5 5 H 1.07995 * 120.00169 * 240.00065 * 4 2 1 6 6 C 1.37878 * 119.99479 * 59.99996 * 4 2 1 7 7 N 1.31515 * 120.00437 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47102 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 120.00084 * 8 6 4 11 11 H 1.48501 * 109.47057 * 240.00065 * 8 6 4 12 12 C 1.53002 * 109.46978 * 120.00303 * 2 1 3 13 13 N 1.46496 * 109.47045 * 299.99399 * 12 2 1 14 14 C 1.34784 * 120.00155 * 179.97438 * 13 12 2 15 15 O 1.21350 * 119.99452 * 0.02562 * 14 13 12 16 16 C 1.49446 * 119.99947 * 180.02562 * 14 13 12 17 17 O 1.21345 * 120.00194 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99676 * 180.02562 * 16 14 13 19 19 C 1.46506 * 120.00072 * 180.02562 * 18 16 14 20 20 C 1.50703 * 109.47289 * 179.97438 * 19 18 16 21 21 C 1.38218 * 120.01072 * 105.00098 * 20 19 18 22 22 C 1.38214 * 120.02377 * 179.97438 * 21 20 19 23 23 C 1.38265 * 120.05476 * 0.02562 * 22 21 20 24 24 C 1.38180 * 120.02127 * 0.02562 * 23 22 21 25 25 C 1.38437 * 120.01312 * 284.72220 * 20 19 18 26 26 F 1.35097 * 120.02358 * 0.02562 * 25 20 19 27 27 H 1.09002 * 109.47045 * 299.99864 * 1 2 3 28 28 H 1.09000 * 109.47140 * 59.99771 * 1 2 3 29 29 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47772 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47099 * 300.00254 * 3 2 1 32 32 H 1.09002 * 109.47374 * 60.00021 * 3 2 1 33 33 H 0.96999 * 120.00397 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47006 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47600 * 60.00041 * 12 2 1 36 36 H 0.97002 * 120.00100 * 0.02562 * 13 12 2 37 37 H 0.97001 * 120.00676 * 359.97438 * 18 16 14 38 38 H 1.09001 * 109.47060 * 300.00359 * 19 18 16 39 39 H 1.09004 * 109.47073 * 59.99848 * 19 18 16 40 40 H 1.08006 * 119.98901 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.97625 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.99394 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.00951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6696 15 8 2.5744 -1.4782 3.7808 16 6 1.3783 0.2127 4.8898 17 8 0.6804 1.1991 4.7784 18 7 1.7039 -0.2478 6.1138 19 6 1.2147 0.4422 7.3101 20 6 1.7167 -0.2685 8.5405 21 6 2.7445 0.2797 9.2846 22 6 3.2047 -0.3716 10.4134 23 6 2.6381 -1.5723 10.7995 24 6 1.6113 -2.1228 10.0566 25 6 1.1447 -1.4677 8.9293 26 9 0.1367 -2.0018 8.2057 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.7095 1.1618 -3.4844 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9938 0.7578 2.3564 37 1 2.2615 -1.0365 6.2029 38 1 1.5773 1.4702 7.3104 39 1 0.1247 0.4414 7.3098 40 1 3.1881 1.2173 8.9838 41 1 4.0081 0.0572 10.9940 42 1 2.9988 -2.0806 11.6815 43 1 1.1691 -3.0609 10.3581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420687268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:38 Heat of formation + Delta-G solvation = -115.166951 kcal Electronic energy + Delta-G solvation = -26367.424604 eV Core-core repulsion = 22326.168603 eV Total energy + Delta-G solvation = -4041.256001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97426 -41.76893 -40.22810 -39.57871 -38.21130 -36.40186 -35.01306 -32.76889 -32.61162 -31.45219 -28.47788 -27.59347 -27.46142 -26.93252 -24.46228 -23.79050 -22.53830 -21.56344 -20.73032 -19.85140 -18.54910 -18.09105 -17.73450 -17.57243 -17.04636 -16.97452 -16.71921 -16.56380 -16.36631 -15.85073 -15.66727 -15.13157 -14.96217 -14.76843 -14.61401 -14.25561 -14.09300 -14.05530 -13.70379 -13.27770 -13.22337 -13.14625 -12.83519 -12.71593 -12.57367 -12.56308 -12.28673 -12.12315 -12.00334 -11.51566 -11.31610 -10.83512 -10.69030 -10.46028 -10.41523 -10.14396 -10.02264 -9.70294 -8.01832 -6.18241 0.01534 0.21748 0.30431 1.36829 1.43022 1.47468 1.56698 2.10612 2.44258 2.54353 2.81171 3.22010 3.24462 3.37828 3.44950 3.72693 4.03308 4.25448 4.33498 4.35549 4.46160 4.48444 4.51336 4.67067 4.87266 4.91354 4.99463 5.03333 5.05267 5.07014 5.16634 5.17020 5.20215 5.34608 5.44406 5.47226 5.64212 5.67498 5.86097 5.91127 6.10617 6.18269 6.33248 6.40782 6.67015 6.85431 6.93068 7.49698 8.97664 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.002199 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.884692 B =12730.613491 C =12887.795739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.049 3.951 3 C -0.124 4.124 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.498 3.502 15 O -0.551 6.551 16 C 0.516 3.484 17 O -0.538 6.538 18 N -0.686 5.686 19 C 0.161 3.839 20 C -0.156 4.156 21 C -0.072 4.072 22 C -0.128 4.128 23 C -0.078 4.078 24 C -0.163 4.163 25 C 0.088 3.912 26 F -0.151 7.151 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.414 0.586 37 H 0.416 0.584 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 -1.075 28.504 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.181 4.181 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.020 3.980 13 N -0.332 5.332 14 C 0.279 3.721 15 O -0.431 6.431 16 C 0.296 3.704 17 O -0.415 6.415 18 N -0.339 5.339 19 C 0.039 3.961 20 C -0.158 4.158 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.182 4.182 25 C 0.069 3.931 26 F -0.130 7.130 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.253 0.747 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.240 -0.962 28.314 28.515 hybrid contribution -0.195 -0.629 -1.423 1.567 sum 3.044 -1.591 26.891 27.110 Atomic orbital electron populations 1.21711 0.97379 0.98885 1.00231 1.18398 0.93142 0.93109 0.90502 1.21701 0.98275 0.97923 1.00248 1.21257 1.31675 1.12207 0.91111 0.93058 1.25509 0.95153 0.95607 1.01189 1.69931 1.37068 1.23400 1.23584 0.85644 0.78033 0.78714 0.80020 1.19660 1.20930 1.20849 1.21564 0.98000 0.95463 0.82962 1.46064 1.50717 1.31448 1.04942 1.20292 0.81717 0.84875 0.85263 1.90716 1.38585 1.26678 1.87078 1.19993 0.81057 0.84397 0.84942 1.90753 1.37582 1.26229 1.86960 1.45792 1.51936 1.32036 1.04130 1.20304 0.99582 0.96443 0.79745 1.19866 1.00863 0.95995 0.99034 1.21323 0.93206 1.00447 0.94065 1.21640 1.00845 0.95387 0.96692 1.21513 0.93501 0.95221 0.99332 1.21457 0.99959 1.02052 0.94735 1.17998 0.88357 0.93906 0.92845 1.91497 1.58341 1.85919 1.77234 0.95179 0.91731 0.95816 0.95667 0.91762 0.95123 0.93047 0.92590 0.92819 0.74841 0.74692 0.88137 0.90716 0.82848 0.82129 0.81908 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.08 71.98 0.58 -5.15 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 4 C -0.52 -27.45 8.01 25.60 0.21 -27.25 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.32 5.15 84.65 0.44 1.76 16 7 N -0.90 -48.57 9.35 21.45 0.20 -48.37 16 8 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.14 6.03 4.50 86.38 0.39 6.42 16 13 N -0.68 -25.27 4.95 -464.40 -2.30 -27.57 16 14 C 0.50 17.61 7.89 87.27 0.69 18.29 16 15 O -0.55 -21.38 16.48 -3.25 -0.05 -21.43 16 16 C 0.52 15.84 7.89 87.27 0.69 16.52 16 17 O -0.54 -18.34 16.48 -3.23 -0.05 -18.39 16 18 N -0.69 -16.60 5.54 -468.13 -2.59 -19.20 16 19 C 0.16 3.12 5.49 85.63 0.47 3.59 16 20 C -0.16 -2.49 5.25 -19.82 -0.10 -2.59 16 21 C -0.07 -0.77 9.67 22.26 0.22 -0.56 16 22 C -0.13 -0.96 10.04 22.27 0.22 -0.73 16 23 C -0.08 -0.61 10.04 22.26 0.22 -0.39 16 24 C -0.16 -2.06 10.03 22.31 0.22 -1.83 16 25 C 0.09 1.57 7.25 22.37 0.16 1.73 16 26 F -0.15 -3.45 16.75 44.97 0.75 -2.70 16 27 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 28 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 32 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 33 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.41 14.96 5.64 -92.71 -0.52 14.44 16 37 H 0.42 9.67 7.94 -92.71 -0.74 8.94 16 38 H 0.10 1.69 7.95 -2.39 -0.02 1.67 16 39 H 0.07 1.61 8.07 -2.38 -0.02 1.59 16 40 H 0.15 1.06 8.00 -2.91 -0.02 1.04 16 41 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.16 0.32 8.06 -2.91 -0.02 0.29 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -62.98 364.54 2.73 -60.24 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.20 Total: 25.86 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.96 Total: 7.01 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -4.69 Total: -95.14 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.11 Total: -39.82 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.75 Total: -2.70 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -62.98 2.73 -60.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420687268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.923 kcal (2) G-P(sol) polarization free energy of solvation -62.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds