Wall clock time and date at job start Tue Mar 31 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 C 1.53003 * 109.47389 * 239.99923 * 2 1 3 5 5 C 1.50702 * 109.46885 * 119.99660 * 2 1 3 6 6 O 1.21290 * 119.99942 * 0.02562 * 5 2 1 7 7 N 1.34778 * 120.00061 * 179.97438 * 5 2 1 8 8 C 1.40048 * 120.00077 * 185.27589 * 7 5 2 9 9 C 1.39046 * 119.96470 * 33.37463 * 8 7 5 10 10 C 1.38111 * 120.26985 * 180.02562 * 9 8 7 11 11 C 1.38337 * 120.19689 * 359.97438 * 10 9 8 12 12 F 1.35100 * 120.03565 * 179.97438 * 11 10 9 13 13 C 1.39814 * 119.92323 * 0.02562 * 11 10 9 14 14 C 1.47702 * 120.13273 * 179.97438 * 13 11 10 15 15 O 1.21560 * 120.00039 * 359.97438 * 14 13 11 16 16 N 1.34773 * 119.99725 * 179.97438 * 14 13 11 17 17 C 1.46504 * 119.99851 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46894 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00551 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00238 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99927 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47462 * 89.99866 * 22 20 18 24 24 H 1.48498 * 109.47292 * 210.00118 * 22 20 18 25 25 H 1.48502 * 109.47177 * 330.00060 * 22 20 18 26 26 C 1.38483 * 119.96310 * 213.62483 * 8 7 5 27 27 H 1.08995 * 109.47228 * 300.00452 * 1 2 3 28 28 H 1.09000 * 109.46623 * 60.00151 * 1 2 3 29 29 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47360 * 299.99398 * 3 2 1 32 32 H 1.08995 * 109.47550 * 59.99745 * 3 2 1 33 33 H 1.09004 * 109.46431 * 300.00063 * 4 2 1 34 34 H 1.09001 * 109.46817 * 59.99739 * 4 2 1 35 35 H 1.08997 * 109.47332 * 180.02562 * 4 2 1 36 36 H 0.97001 * 119.99458 * 5.28015 * 7 5 2 37 37 H 1.07999 * 119.86102 * 0.02562 * 9 8 7 38 38 H 1.07997 * 119.89960 * 179.97438 * 10 9 8 39 39 H 0.97001 * 120.00083 * 359.97438 * 16 14 13 40 40 H 1.08997 * 109.46921 * 299.99874 * 17 16 14 41 41 H 1.08998 * 109.47277 * 60.00346 * 17 16 14 42 42 H 0.96996 * 120.00071 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.09701 * 0.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2441 -1.1716 2.0287 7 7 3.3574 -0.8340 1.4436 8 6 3.8251 -1.5882 2.5271 9 6 3.1198 -2.7100 2.9483 10 6 3.5750 -3.4580 4.0163 11 6 4.7368 -3.0962 4.6743 12 9 5.1788 -3.8300 5.7190 13 6 5.4524 -1.9697 4.2576 14 6 6.6931 -1.5788 4.9572 15 8 7.0937 -2.2368 5.8976 16 7 7.3811 -0.4927 4.5529 17 6 8.6114 -0.1047 5.2471 18 6 9.1822 1.1329 4.6039 19 1 8.6791 1.5849 3.7619 20 6 10.3467 1.6881 5.0903 21 7 10.8451 2.7678 4.5287 22 14 11.2166 0.9067 6.5470 23 1 12.1934 -0.0996 6.0588 24 1 11.9305 1.9559 7.3183 25 1 10.2175 0.2427 7.4223 26 6 4.9867 -1.2128 3.1810 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 3.9871 -0.4005 0.8466 37 1 2.2123 -2.9975 2.4381 38 1 3.0222 -4.3280 4.3387 39 1 7.0616 0.0321 3.8023 40 1 8.3887 0.0995 6.2944 41 1 9.3370 -0.9154 5.1812 42 1 11.6642 3.1586 4.8711 43 1 5.5324 -0.3390 2.8569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:09 Heat of formation + Delta-G solvation = -100.870511 kcal Electronic energy + Delta-G solvation = -26699.213223 eV Core-core repulsion = 22658.577162 eV Total energy + Delta-G solvation = -4040.636061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.67988 -41.13364 -39.52095 -38.12208 -36.05955 -34.91984 -34.41461 -32.55422 -31.43579 -29.48014 -27.93718 -27.83331 -27.52823 -24.50207 -23.96514 -22.70979 -21.52262 -20.33524 -19.69992 -18.44164 -17.47283 -17.39764 -16.78265 -16.36788 -15.86503 -15.57821 -15.44765 -15.05410 -14.85407 -14.49171 -14.39047 -14.34157 -14.06172 -13.92957 -13.37374 -13.06259 -12.89157 -12.79923 -12.71511 -12.59275 -12.39766 -12.33976 -12.16553 -12.13743 -11.55369 -11.43097 -11.40234 -11.06738 -10.80626 -10.47817 -10.08614 -9.99980 -9.55057 -9.38503 -9.25798 -8.82174 -8.30580 -8.15792 -6.25764 -4.28489 0.69699 0.92085 2.19687 2.61815 3.06354 3.25089 3.31917 3.40931 3.75097 3.82850 4.05333 4.21060 4.26508 4.30606 4.37896 4.53043 4.70109 4.72836 5.03352 5.08106 5.09958 5.13386 5.20918 5.22878 5.25227 5.35999 5.42881 5.45539 5.57903 5.64158 5.74586 5.83981 5.88833 5.96966 5.98663 6.14491 6.67441 6.77117 6.99651 7.02051 7.11360 7.31872 7.73908 8.04920 8.41044 8.67694 8.80505 9.34028 10.85961 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003165 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.586518 B = 8844.120570 C =10717.128352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.143 4.143 5 C 0.523 3.477 6 O -0.518 6.518 7 N -0.669 5.669 8 C 0.126 3.874 9 C -0.073 4.073 10 C -0.146 4.146 11 C 0.142 3.858 12 F -0.115 7.115 13 C -0.141 4.141 14 C 0.542 3.458 15 O -0.538 6.538 16 N -0.696 5.696 17 C 0.220 3.780 18 C -0.545 4.545 19 H 0.079 0.921 20 C 0.079 3.921 21 N -0.891 5.891 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.084 4.084 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.413 0.587 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.395 0.605 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.268 0.732 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.163 -6.520 -13.494 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.203 4.203 4 C -0.200 4.200 5 C 0.311 3.689 6 O -0.393 6.393 7 N -0.315 5.315 8 C 0.032 3.968 9 C -0.093 4.093 10 C -0.165 4.165 11 C 0.121 3.879 12 F -0.093 7.093 13 C -0.146 4.146 14 C 0.326 3.674 15 O -0.417 6.417 16 N -0.345 5.345 17 C 0.098 3.902 18 C -0.583 4.583 19 H 0.097 0.903 20 C -0.125 4.125 21 N -0.528 5.528 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.106 4.106 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.250 0.750 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.229 0.771 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.263 -7.156 -12.238 24.730 hybrid contribution 0.872 0.176 0.215 0.915 sum -19.392 -6.980 -12.023 23.860 Atomic orbital electron populations 1.21685 0.91536 1.03005 1.02409 1.20840 0.98353 0.96618 0.92914 1.21926 1.01499 0.93410 1.03446 1.21903 1.01465 1.00689 0.95971 1.20844 0.81463 0.79242 0.87351 1.90721 1.55046 1.47548 1.45945 1.43552 1.08034 1.51436 1.28478 1.17532 0.95439 0.92588 0.91253 1.21065 0.99918 0.91954 0.96409 1.20998 0.95827 1.02257 0.97453 1.17696 0.93324 0.90364 0.86498 1.91591 1.88774 1.74916 1.54007 1.20096 0.98257 0.97176 0.99043 1.17965 0.83320 0.81966 0.84105 1.90798 1.69183 1.53206 1.28493 1.46099 1.26665 1.26890 1.34851 1.19563 0.81393 0.95903 0.93339 1.21047 1.09703 1.09687 1.17837 0.90256 1.24778 0.96510 0.94491 0.96728 1.69870 1.21349 1.20511 1.41113 0.86825 0.80476 0.79405 0.83079 1.19773 1.20845 1.18412 1.21005 0.96351 0.99291 0.93907 0.91723 0.91724 0.91825 0.91813 0.90905 0.91674 0.91883 0.90934 0.91855 0.74965 0.83717 0.83808 0.77064 0.95376 0.95816 0.92198 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 7.76 37.16 0.29 -0.55 16 2 C -0.08 -0.53 0.87 -155.66 -0.14 -0.67 16 3 C -0.15 -0.77 8.37 37.16 0.31 -0.46 16 4 C -0.14 -0.66 8.38 37.16 0.31 -0.35 16 5 C 0.52 4.91 6.22 -10.98 -0.07 4.84 16 6 O -0.52 -6.65 13.66 5.55 0.08 -6.57 16 7 N -0.67 -5.73 5.12 -9.88 -0.05 -5.78 16 8 C 0.13 1.41 6.27 -83.71 -0.53 0.89 16 9 C -0.07 -0.85 8.65 -39.33 -0.34 -1.19 16 10 C -0.15 -1.77 10.01 -39.59 -0.40 -2.17 16 11 C 0.14 2.20 7.28 -38.96 -0.28 1.92 16 12 F -0.11 -2.04 15.54 2.25 0.03 -2.01 16 13 C -0.14 -2.26 5.88 -104.93 -0.62 -2.88 16 14 C 0.54 10.99 7.77 -12.40 -0.10 10.89 16 15 O -0.54 -12.97 15.33 5.31 0.08 -12.88 16 16 N -0.70 -14.20 5.50 -62.48 -0.34 -14.54 16 17 C 0.22 5.39 4.50 -5.19 -0.02 5.37 16 18 C -0.54 -14.67 9.83 -34.44 -0.34 -15.01 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 22 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.95 16 26 C -0.08 -1.06 9.45 -38.98 -0.37 -1.43 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.29 7.46 -51.93 -0.39 -0.10 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.25 7.69 -51.93 -0.40 -0.15 16 36 H 0.41 2.40 7.68 -40.82 -0.31 2.09 16 37 H 0.15 1.60 6.40 -52.49 -0.34 1.26 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.39 6.85 6.35 -40.82 -0.26 6.60 16 40 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 41 H 0.02 0.61 7.57 -51.93 -0.39 0.21 16 42 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 43 H 0.14 1.51 6.40 -52.48 -0.34 1.18 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -34.49 361.90 -6.78 -41.27 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.75 Total: 2.36 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.38 Total: 1.32 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.38 Total: -45.56 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.16 Total: -19.46 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.49 -6.78 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.599 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds