Wall clock time and date at job start Tue Mar 31 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 C 1.53003 * 109.47389 * 239.99923 * 2 1 3 5 5 C 1.50702 * 109.46885 * 119.99660 * 2 1 3 6 6 O 1.21290 * 119.99942 * 0.02562 * 5 2 1 7 7 N 1.34778 * 120.00061 * 179.97438 * 5 2 1 8 8 C 1.40048 * 120.00077 * 185.27589 * 7 5 2 9 9 C 1.39046 * 119.96470 * 33.37463 * 8 7 5 10 10 C 1.38111 * 120.26985 * 180.02562 * 9 8 7 11 11 C 1.38337 * 120.19689 * 359.97438 * 10 9 8 12 12 F 1.35100 * 120.03565 * 179.97438 * 11 10 9 13 13 C 1.39814 * 119.92323 * 0.02562 * 11 10 9 14 14 C 1.47702 * 120.13273 * 179.97438 * 13 11 10 15 15 O 1.21560 * 120.00039 * 359.97438 * 14 13 11 16 16 N 1.34773 * 119.99725 * 179.97438 * 14 13 11 17 17 C 1.46504 * 119.99851 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46894 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00551 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00238 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99927 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47462 * 89.99866 * 22 20 18 24 24 H 1.48498 * 109.47292 * 210.00118 * 22 20 18 25 25 H 1.48502 * 109.47177 * 330.00060 * 22 20 18 26 26 C 1.38483 * 119.96310 * 213.62483 * 8 7 5 27 27 H 1.08995 * 109.47228 * 300.00452 * 1 2 3 28 28 H 1.09000 * 109.46623 * 60.00151 * 1 2 3 29 29 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47360 * 299.99398 * 3 2 1 32 32 H 1.08995 * 109.47550 * 59.99745 * 3 2 1 33 33 H 1.09004 * 109.46431 * 300.00063 * 4 2 1 34 34 H 1.09001 * 109.46817 * 59.99739 * 4 2 1 35 35 H 1.08997 * 109.47332 * 180.02562 * 4 2 1 36 36 H 0.97001 * 119.99458 * 5.28015 * 7 5 2 37 37 H 1.07999 * 119.86102 * 0.02562 * 9 8 7 38 38 H 1.07997 * 119.89960 * 179.97438 * 10 9 8 39 39 H 0.97001 * 120.00083 * 359.97438 * 16 14 13 40 40 H 1.08997 * 109.46921 * 299.99874 * 17 16 14 41 41 H 1.08998 * 109.47277 * 60.00346 * 17 16 14 42 42 H 0.96996 * 120.00071 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.09701 * 0.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2441 -1.1716 2.0287 7 7 3.3574 -0.8340 1.4436 8 6 3.8251 -1.5882 2.5271 9 6 3.1198 -2.7100 2.9483 10 6 3.5750 -3.4580 4.0163 11 6 4.7368 -3.0962 4.6743 12 9 5.1788 -3.8300 5.7190 13 6 5.4524 -1.9697 4.2576 14 6 6.6931 -1.5788 4.9572 15 8 7.0937 -2.2368 5.8976 16 7 7.3811 -0.4927 4.5529 17 6 8.6114 -0.1047 5.2471 18 6 9.1822 1.1329 4.6039 19 1 8.6791 1.5849 3.7619 20 6 10.3467 1.6881 5.0903 21 7 10.8451 2.7678 4.5287 22 14 11.2166 0.9067 6.5470 23 1 12.1934 -0.0996 6.0588 24 1 11.9305 1.9559 7.3183 25 1 10.2175 0.2427 7.4223 26 6 4.9867 -1.2128 3.1810 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 3.9871 -0.4005 0.8466 37 1 2.2123 -2.9975 2.4381 38 1 3.0222 -4.3280 4.3387 39 1 7.0616 0.0321 3.8023 40 1 8.3887 0.0995 6.2944 41 1 9.3370 -0.9154 5.1812 42 1 11.6642 3.1586 4.8711 43 1 5.5324 -0.3390 2.8569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427626560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:08 Heat of formation + Delta-G solvation = -124.524163 kcal Electronic energy + Delta-G solvation = -26700.238923 eV Core-core repulsion = 22658.577162 eV Total energy + Delta-G solvation = -4041.661761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.93225 -41.97118 -40.88976 -39.32366 -36.67502 -36.30221 -35.78471 -34.52764 -32.71336 -30.46584 -29.82304 -28.19876 -28.01034 -25.75792 -24.82472 -24.23391 -22.83068 -21.74305 -20.57207 -19.78558 -18.72881 -18.47907 -18.10083 -17.46272 -17.22463 -16.89786 -16.68863 -16.24665 -16.05516 -15.90871 -15.69147 -15.45022 -14.80301 -14.73797 -14.63688 -14.37397 -14.27159 -14.21324 -13.96206 -13.51797 -13.29563 -13.10163 -13.04583 -12.90850 -12.73427 -12.60937 -12.58921 -11.95634 -11.89401 -11.85092 -11.67396 -11.44996 -11.13108 -10.92999 -10.77853 -10.36848 -10.00986 -9.22376 -8.41076 -6.47847 -0.45798 -0.07929 1.31978 1.35105 1.38112 1.47315 1.76329 1.88322 2.21713 2.27893 2.56426 2.94622 3.10214 3.43113 3.49225 3.60245 3.81486 3.92345 3.98792 4.06236 4.15761 4.36587 4.52793 4.73746 4.74164 4.75557 4.85447 4.86304 4.95614 4.97053 4.98041 4.98120 4.98272 5.04983 5.17766 5.22175 5.28209 5.36499 5.37543 5.38015 5.69318 6.05227 6.29709 6.50334 6.68359 7.01043 7.10005 7.25447 8.73115 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003165 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.586518 B = 8844.120570 C =10717.128352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.555 6.555 7 N -0.658 5.658 8 C 0.135 3.865 9 C -0.066 4.066 10 C -0.131 4.131 11 C 0.119 3.881 12 F -0.135 7.135 13 C -0.160 4.160 14 C 0.542 3.458 15 O -0.582 6.582 16 N -0.692 5.692 17 C 0.230 3.770 18 C -0.545 4.545 19 H 0.066 0.934 20 C 0.031 3.969 21 N -0.927 5.927 22 Si 0.931 3.069 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.263 1.263 26 C -0.075 4.075 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.429 0.571 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.409 0.591 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.273 0.727 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.311 -6.577 -15.316 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C -0.203 4.203 4 C -0.199 4.199 5 C 0.311 3.689 6 O -0.431 6.431 7 N -0.305 5.305 8 C 0.040 3.960 9 C -0.086 4.086 10 C -0.150 4.150 11 C 0.097 3.903 12 F -0.114 7.114 13 C -0.164 4.164 14 C 0.330 3.670 15 O -0.464 6.464 16 N -0.342 5.342 17 C 0.107 3.893 18 C -0.583 4.583 19 H 0.084 0.916 20 C -0.170 4.170 21 N -0.565 5.565 22 Si 0.755 3.245 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.188 1.188 26 C -0.097 4.097 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.174 0.826 38 H 0.188 0.812 39 H 0.247 0.753 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.082 0.918 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.419 -7.186 -14.118 26.641 hybrid contribution 1.083 0.219 0.662 1.288 sum -20.336 -6.968 -13.456 25.360 Atomic orbital electron populations 1.21703 0.91831 1.02477 1.02662 1.20869 0.98059 0.97083 0.92027 1.21966 1.02211 0.92472 1.03687 1.21929 1.02164 1.00315 0.95463 1.21505 0.81102 0.78557 0.87768 1.90707 1.55920 1.49166 1.47336 1.43547 1.08359 1.50846 1.27753 1.17576 0.94565 0.92415 0.91399 1.21289 0.99874 0.91615 0.95852 1.21206 0.94404 1.02762 0.96660 1.18023 0.94688 0.90645 0.86899 1.91535 1.89231 1.75448 1.55141 1.19778 0.97154 0.98817 1.00691 1.18530 0.84113 0.80908 0.83492 1.90763 1.70616 1.54474 1.30566 1.45876 1.25684 1.27470 1.35169 1.19194 0.82777 0.94586 0.92740 1.21220 1.09596 1.10169 1.17334 0.91613 1.25506 0.97380 0.94938 0.99130 1.69954 1.22136 1.21773 1.42662 0.85945 0.79447 0.78892 0.80172 1.18936 1.19758 1.18781 1.21062 0.96739 0.99145 0.92709 0.93372 0.89558 0.92764 0.90744 0.89161 0.93007 0.92410 0.89259 0.90789 0.73115 0.82646 0.81232 0.75325 0.96826 0.96713 0.91778 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 7.76 71.98 0.56 -0.90 16 2 C -0.08 -0.78 0.87 -52.93 -0.05 -0.83 16 3 C -0.15 -1.14 8.37 71.98 0.60 -0.54 16 4 C -0.14 -0.85 8.38 71.98 0.60 -0.25 16 5 C 0.52 8.66 6.22 87.66 0.54 9.20 16 6 O -0.55 -13.39 13.66 -3.06 -0.04 -13.44 16 7 N -0.66 -9.51 5.12 -303.56 -1.55 -11.06 16 8 C 0.14 2.73 6.27 38.08 0.24 2.97 16 9 C -0.07 -1.38 8.65 22.43 0.19 -1.18 16 10 C -0.13 -2.96 10.01 22.26 0.22 -2.74 16 11 C 0.12 3.63 7.28 22.67 0.17 3.79 16 12 F -0.14 -4.91 15.54 44.97 0.70 -4.21 16 13 C -0.16 -5.06 5.88 -20.07 -0.12 -5.18 16 14 C 0.54 22.23 7.77 86.74 0.67 22.90 16 15 O -0.58 -28.81 15.33 -3.91 -0.06 -28.87 16 16 N -0.69 -28.25 5.50 -469.86 -2.58 -30.83 16 17 C 0.23 11.37 4.50 85.63 0.38 11.76 16 18 C -0.55 -29.48 9.83 25.60 0.25 -29.23 16 19 H 0.07 3.65 7.84 -2.91 -0.02 3.63 16 20 C 0.03 1.75 5.47 84.66 0.46 2.21 16 21 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 22 Si 0.93 43.85 27.47 68.60 1.88 45.73 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 26 C -0.08 -1.76 9.45 22.66 0.21 -1.55 16 27 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.07 0.42 7.46 -2.38 -0.02 0.41 16 31 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 0.30 7.69 -2.39 -0.02 0.28 16 36 H 0.43 3.57 7.68 -92.71 -0.71 2.86 16 37 H 0.16 3.04 6.40 -2.91 -0.02 3.02 16 38 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.41 13.97 6.35 -92.71 -0.59 13.38 16 40 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 41 H 0.01 0.76 7.57 -2.39 -0.02 0.75 16 42 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.16 3.06 6.40 -2.91 -0.02 3.04 16 Total: -1.00 -75.53 361.90 3.30 -72.23 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -0.30 Total: 13.86 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.95 Total: 10.43 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -3.84 Total: -95.74 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.10 Total: -42.30 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.70 Total: -4.21 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -75.53 3.30 -72.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.290 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds