Wall clock time and date at job start Tue Mar 31 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.52996 * 109.47717 * 120.00128 * 2 1 3 5 5 C 1.50703 * 109.47231 * 64.99645 * 4 2 1 6 6 O 1.21286 * 119.99809 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00054 * 180.27961 * 5 4 2 8 8 C 1.39549 * 119.99695 * 175.22263 * 7 5 4 9 9 C 1.39069 * 119.93873 * 34.75551 * 8 7 5 10 10 C 1.37698 * 120.10429 * 179.76298 * 9 8 7 11 11 C 1.39736 * 119.96466 * 0.53576 * 10 9 8 12 12 C 1.47606 * 120.06343 * 179.74160 * 11 10 9 13 13 O 1.21579 * 119.99661 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00077 * 359.97438 * 12 11 10 15 15 C 1.46498 * 120.00006 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.46894 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00715 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00172 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00115 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47350 * 90.00457 * 20 18 16 22 22 H 1.48502 * 109.47133 * 210.00430 * 20 18 16 23 23 H 1.48503 * 109.47385 * 330.00135 * 20 18 16 24 24 C 1.39743 * 119.87009 * 359.71839 * 11 10 9 25 25 C 1.37875 * 119.89738 * 359.97438 * 24 11 10 26 26 F 1.35097 * 119.98560 * 180.02562 * 25 24 11 27 27 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47247 * 299.99567 * 1 2 3 29 29 H 1.08997 * 109.47639 * 60.00149 * 1 2 3 30 30 H 1.09007 * 109.47490 * 240.00311 * 2 1 3 31 31 H 1.08999 * 109.47619 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47036 * 300.00328 * 3 2 1 33 33 H 1.08998 * 109.47029 * 59.99415 * 3 2 1 34 34 H 1.09005 * 109.47032 * 305.00281 * 4 2 1 35 35 H 1.08994 * 109.47630 * 185.00102 * 4 2 1 36 36 H 0.96999 * 120.00236 * 355.21942 * 7 5 4 37 37 H 1.08003 * 119.94383 * 359.97438 * 9 8 7 38 38 H 1.08003 * 120.01172 * 180.22991 * 10 9 8 39 39 H 0.97006 * 119.99731 * 359.97438 * 14 12 11 40 40 H 1.08998 * 109.47210 * 299.99724 * 15 14 12 41 41 H 1.08998 * 109.46935 * 59.99771 * 15 14 12 42 42 H 0.96999 * 120.00681 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.05295 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.6414 -2.1733 1.1889 6 8 1.0117 -2.5904 0.2399 7 7 1.9802 -3.0074 2.1918 8 6 1.5267 -4.3271 2.1851 9 6 1.3886 -5.0074 0.9801 10 6 0.9460 -6.3113 0.9698 11 6 0.6244 -6.9486 2.1711 12 6 0.1443 -8.3444 2.1622 13 8 -0.1348 -8.8978 3.2081 14 7 0.0154 -9.0052 0.9947 15 6 -0.4606 -10.3907 0.9859 16 6 -0.5148 -10.8942 -0.4335 17 1 -0.2243 -10.2468 -1.2476 18 6 -0.9364 -12.1810 -0.6928 19 7 -0.9833 -12.6207 -1.9314 20 14 -1.4396 -13.3006 0.7153 21 1 -2.8926 -13.1429 0.9782 22 1 -1.1525 -14.7117 0.3526 23 1 -0.6736 -12.9374 1.9346 24 6 0.7585 -6.2621 3.3808 25 6 1.2082 -4.9587 3.3852 26 9 1.3391 -4.2935 4.5537 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6443 1.2950 36 1 2.5393 -2.6903 2.9183 37 1 1.6322 -4.5133 0.0511 38 1 0.8429 -6.8394 0.0334 39 1 0.2377 -8.5634 0.1602 40 1 0.2207 -11.0126 1.5666 41 1 -1.4571 -10.4353 1.4252 42 1 -1.2795 -13.5261 -2.1139 43 1 0.5111 -6.7519 4.3110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427652338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:17 Heat of formation + Delta-G solvation = -104.073435 kcal Electronic energy + Delta-G solvation = -26092.200162 eV Core-core repulsion = 22051.425211 eV Total energy + Delta-G solvation = -4040.774950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.11593 -40.97171 -39.62619 -38.00298 -36.09522 -35.05864 -34.45247 -32.44560 -30.88383 -30.59349 -28.64311 -27.57773 -27.44794 -24.26572 -23.04441 -22.16560 -21.29840 -20.28087 -20.14044 -18.64547 -18.01845 -17.44515 -16.61555 -16.56447 -15.96556 -15.86792 -15.82082 -15.24878 -15.06664 -14.58692 -14.52105 -14.24481 -14.14554 -14.03045 -13.45045 -13.15008 -12.85768 -12.75849 -12.58537 -12.55269 -12.40686 -12.33161 -12.11959 -11.72586 -11.49315 -11.28591 -11.09783 -11.04963 -10.80988 -10.67042 -10.08145 -9.98730 -9.53050 -9.43148 -9.03931 -8.80442 -8.48763 -8.16862 -6.22722 -4.25537 0.57121 1.04956 2.11229 2.53481 2.99429 3.26307 3.33009 3.41040 3.68915 3.87590 4.04002 4.14104 4.30906 4.32285 4.45562 4.60567 4.80846 4.95264 5.01234 5.01995 5.07956 5.10116 5.12480 5.21436 5.23669 5.31329 5.51302 5.59105 5.71316 5.76827 5.85566 5.93089 5.95778 6.06069 6.14086 6.19558 6.65597 6.77628 6.86987 7.03186 7.12825 7.34155 7.66868 8.07587 8.44146 8.70224 8.82213 9.36544 10.89052 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002413 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.983641 B =11601.305515 C =12754.672344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.509 6.509 7 N -0.672 5.672 8 C 0.129 3.871 9 C -0.102 4.102 10 C -0.076 4.076 11 C -0.108 4.108 12 C 0.543 3.457 13 O -0.551 6.551 14 N -0.695 5.695 15 C 0.219 3.781 16 C -0.545 4.545 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.080 4.080 25 C 0.062 3.938 26 F -0.137 7.137 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.414 0.586 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.397 0.603 40 H 0.029 0.971 41 H 0.024 0.976 42 H 0.268 0.732 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 27.681 7.122 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.175 4.175 5 C 0.302 3.698 6 O -0.383 6.383 7 N -0.317 5.317 8 C 0.033 3.967 9 C -0.122 4.122 10 C -0.095 4.095 11 C -0.112 4.112 12 C 0.328 3.672 13 O -0.432 6.432 14 N -0.343 5.343 15 C 0.097 3.903 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 C -0.100 4.100 25 C 0.040 3.960 26 F -0.116 7.116 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.250 0.750 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.232 0.768 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.078 26.885 7.053 28.945 hybrid contribution 0.119 -0.196 0.861 0.891 sum 8.197 26.689 7.914 29.019 Atomic orbital electron populations 1.21983 0.94502 1.03554 1.01291 1.20891 0.96831 0.95483 0.96858 1.21862 1.00887 0.95620 1.02188 1.21813 1.03252 0.90757 1.01696 1.21017 0.78706 0.88453 0.81648 1.90709 1.38100 1.77416 1.32052 1.43400 1.52120 1.09087 1.27134 1.17832 1.00817 0.84910 0.93151 1.21132 1.00195 0.93545 0.97344 1.21425 0.95986 0.94119 0.97982 1.20041 1.02696 0.95349 0.93127 1.18062 0.79080 0.85269 0.84744 1.90741 1.51617 1.68987 1.31832 1.46144 1.64670 1.16009 1.07489 1.19569 0.94772 0.77413 0.98513 1.21065 1.47015 0.99484 0.90736 0.90157 1.24791 0.94397 0.97616 0.95793 1.69876 1.46386 1.17854 1.18674 0.86817 0.79824 0.80037 0.83021 1.19804 1.20874 1.18470 1.21058 0.97396 0.91602 0.99923 1.17253 1.06424 0.92052 0.80250 1.91477 1.94057 1.80317 1.45726 0.90668 0.93303 0.92667 0.90135 0.92608 0.92184 0.92592 0.88386 0.88401 0.75003 0.82799 0.84019 0.76769 0.95350 0.95818 0.92214 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.93 37.15 0.33 -0.86 16 2 C -0.08 -0.51 2.57 -90.62 -0.23 -0.75 16 3 C -0.15 -0.68 9.19 37.16 0.34 -0.33 16 4 C -0.14 -0.70 5.18 -27.88 -0.14 -0.84 16 5 C 0.51 4.43 7.39 -10.99 -0.08 4.35 16 6 O -0.51 -6.10 11.36 5.55 0.06 -6.04 16 7 N -0.67 -5.57 5.20 -9.80 -0.05 -5.62 16 8 C 0.13 1.46 6.31 -83.64 -0.53 0.93 16 9 C -0.10 -1.23 8.67 -39.47 -0.34 -1.57 16 10 C -0.08 -0.99 9.53 -39.22 -0.37 -1.36 16 11 C -0.11 -1.66 5.88 -104.95 -0.62 -2.28 16 12 C 0.54 10.60 7.76 -12.44 -0.10 10.50 16 13 O -0.55 -12.58 16.34 5.30 0.09 -12.49 16 14 N -0.69 -14.12 5.50 -62.51 -0.34 -14.46 16 15 C 0.22 5.36 4.50 -5.20 -0.02 5.33 16 16 C -0.55 -14.83 9.83 -34.44 -0.34 -15.17 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 20 Si 0.88 21.31 27.47 -169.99 -4.67 16.65 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 C -0.08 -1.12 9.56 -39.15 -0.37 -1.49 16 25 C 0.06 0.75 7.30 -39.32 -0.29 0.47 16 26 F -0.14 -1.56 16.94 2.25 0.04 -1.53 16 27 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.61 7.96 -51.92 -0.41 0.19 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.41 2.23 8.65 -40.82 -0.35 1.88 16 37 H 0.15 1.82 6.18 -52.48 -0.32 1.50 16 38 H 0.14 1.67 6.39 -52.48 -0.34 1.33 16 39 H 0.40 7.04 6.34 -40.82 -0.26 6.78 16 40 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 41 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.15 2.15 7.64 -52.49 -0.40 1.75 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -33.21 362.60 -7.20 -40.41 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.70 Total: 4.13 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.86 Total: -0.97 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.38 Total: -45.61 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.15 Total: -18.53 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.21 -7.20 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427652338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.668 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds