Wall clock time and date at job start Tue Mar 31 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.52996 * 109.47717 * 120.00128 * 2 1 3 5 5 C 1.50703 * 109.47231 * 64.99645 * 4 2 1 6 6 O 1.21286 * 119.99809 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00054 * 180.27961 * 5 4 2 8 8 C 1.39549 * 119.99695 * 175.22263 * 7 5 4 9 9 C 1.39069 * 119.93873 * 34.75551 * 8 7 5 10 10 C 1.37698 * 120.10429 * 179.76298 * 9 8 7 11 11 C 1.39736 * 119.96466 * 0.53576 * 10 9 8 12 12 C 1.47606 * 120.06343 * 179.74160 * 11 10 9 13 13 O 1.21579 * 119.99661 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00077 * 359.97438 * 12 11 10 15 15 C 1.46498 * 120.00006 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.46894 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00715 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00172 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00115 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47350 * 90.00457 * 20 18 16 22 22 H 1.48502 * 109.47133 * 210.00430 * 20 18 16 23 23 H 1.48503 * 109.47385 * 330.00135 * 20 18 16 24 24 C 1.39743 * 119.87009 * 359.71839 * 11 10 9 25 25 C 1.37875 * 119.89738 * 359.97438 * 24 11 10 26 26 F 1.35097 * 119.98560 * 180.02562 * 25 24 11 27 27 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47247 * 299.99567 * 1 2 3 29 29 H 1.08997 * 109.47639 * 60.00149 * 1 2 3 30 30 H 1.09007 * 109.47490 * 240.00311 * 2 1 3 31 31 H 1.08999 * 109.47619 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47036 * 300.00328 * 3 2 1 33 33 H 1.08998 * 109.47029 * 59.99415 * 3 2 1 34 34 H 1.09005 * 109.47032 * 305.00281 * 4 2 1 35 35 H 1.08994 * 109.47630 * 185.00102 * 4 2 1 36 36 H 0.96999 * 120.00236 * 355.21942 * 7 5 4 37 37 H 1.08003 * 119.94383 * 359.97438 * 9 8 7 38 38 H 1.08003 * 120.01172 * 180.22991 * 10 9 8 39 39 H 0.97006 * 119.99731 * 359.97438 * 14 12 11 40 40 H 1.08998 * 109.47210 * 299.99724 * 15 14 12 41 41 H 1.08998 * 109.46935 * 59.99771 * 15 14 12 42 42 H 0.96999 * 120.00681 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.05295 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.6414 -2.1733 1.1889 6 8 1.0117 -2.5904 0.2399 7 7 1.9802 -3.0074 2.1918 8 6 1.5267 -4.3271 2.1851 9 6 1.3886 -5.0074 0.9801 10 6 0.9460 -6.3113 0.9698 11 6 0.6244 -6.9486 2.1711 12 6 0.1443 -8.3444 2.1622 13 8 -0.1348 -8.8978 3.2081 14 7 0.0154 -9.0052 0.9947 15 6 -0.4606 -10.3907 0.9859 16 6 -0.5148 -10.8942 -0.4335 17 1 -0.2243 -10.2468 -1.2476 18 6 -0.9364 -12.1810 -0.6928 19 7 -0.9833 -12.6207 -1.9314 20 14 -1.4396 -13.3006 0.7153 21 1 -2.8926 -13.1429 0.9782 22 1 -1.1525 -14.7117 0.3526 23 1 -0.6736 -12.9374 1.9346 24 6 0.7585 -6.2621 3.3808 25 6 1.2082 -4.9587 3.3852 26 9 1.3391 -4.2935 4.5537 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6443 1.2950 36 1 2.5393 -2.6903 2.9183 37 1 1.6322 -4.5133 0.0511 38 1 0.8429 -6.8394 0.0334 39 1 0.2377 -8.5634 0.1602 40 1 0.2207 -11.0126 1.5666 41 1 -1.4571 -10.4353 1.4252 42 1 -1.2795 -13.5261 -2.1139 43 1 0.5111 -6.7519 4.3110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427652338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:16 Heat of formation + Delta-G solvation = -126.231371 kcal Electronic energy + Delta-G solvation = -26093.161002 eV Core-core repulsion = 22051.425211 eV Total energy + Delta-G solvation = -4041.735791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.06727 -41.81276 -40.94327 -39.16668 -36.71071 -36.28380 -35.89176 -34.47272 -31.90250 -31.74222 -29.92923 -28.74866 -27.93529 -25.51256 -24.08272 -23.84527 -22.22442 -21.55906 -20.84659 -19.90889 -19.12773 -18.38403 -18.21527 -17.57924 -17.28314 -16.81468 -16.63608 -16.52881 -16.23283 -16.15520 -15.93021 -15.13784 -15.00004 -14.87901 -14.71548 -14.39483 -14.36690 -14.27817 -13.66815 -13.55770 -13.28634 -13.07026 -13.02606 -12.79933 -12.74635 -12.70070 -12.06813 -11.93100 -11.75851 -11.67003 -11.63265 -11.53848 -11.15367 -10.92299 -10.77533 -10.07783 -10.05017 -9.35599 -8.39846 -6.47337 -0.51887 0.01472 1.33395 1.35620 1.35878 1.48280 1.70712 1.88903 2.23485 2.28981 2.60444 2.95535 2.96945 3.50600 3.64024 3.66575 3.84424 3.92328 4.03536 4.03980 4.28922 4.38367 4.57995 4.68937 4.72845 4.73709 4.80298 4.86558 4.90053 4.91602 5.00470 5.06755 5.07726 5.11233 5.17881 5.24700 5.33738 5.40635 5.49041 5.52826 5.68275 6.06510 6.23293 6.52166 6.72382 7.00417 7.11378 7.26952 8.74676 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002413 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.983641 B =11601.305515 C =12754.672344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.143 4.143 4 C -0.127 4.127 5 C 0.511 3.489 6 O -0.544 6.544 7 N -0.662 5.662 8 C 0.146 3.854 9 C -0.104 4.104 10 C -0.066 4.066 11 C -0.128 4.128 12 C 0.546 3.454 13 O -0.589 6.589 14 N -0.696 5.696 15 C 0.230 3.770 16 C -0.548 4.548 17 H 0.061 0.939 18 C 0.026 3.974 19 N -0.930 5.930 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.259 1.259 24 C -0.080 4.080 25 C 0.065 3.935 26 F -0.129 7.129 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.430 0.570 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.409 0.591 40 H 0.019 0.981 41 H 0.016 0.984 42 H 0.273 0.727 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 30.078 8.455 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.167 4.167 5 C 0.301 3.699 6 O -0.421 6.421 7 N -0.309 5.309 8 C 0.049 3.951 9 C -0.125 4.125 10 C -0.086 4.086 11 C -0.132 4.132 12 C 0.335 3.665 13 O -0.471 6.471 14 N -0.345 5.345 15 C 0.107 3.893 16 C -0.586 4.586 17 H 0.079 0.921 18 C -0.174 4.174 19 N -0.568 5.568 20 Si 0.761 3.239 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.101 4.101 25 C 0.043 3.957 26 F -0.108 7.108 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.270 0.730 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.246 0.754 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.198 29.338 8.394 31.871 hybrid contribution -0.181 -0.759 0.399 0.877 sum 9.017 28.579 8.793 31.231 Atomic orbital electron populations 1.21963 0.95857 1.01761 1.01737 1.20878 0.95680 0.96722 0.96862 1.21817 1.01624 0.94132 1.02495 1.21886 1.05203 0.87679 1.01893 1.21755 0.77675 0.89703 0.80736 1.90710 1.39648 1.78200 1.33493 1.43472 1.51889 1.07726 1.27807 1.17901 0.98761 0.86022 0.92429 1.21189 1.00266 0.93058 0.97943 1.21485 0.95056 0.94522 0.97493 1.19612 1.05735 0.93300 0.94590 1.18573 0.77803 0.86585 0.83581 1.90708 1.53237 1.70260 1.32923 1.45957 1.65091 1.14767 1.08696 1.19197 0.94244 0.79496 0.96400 1.21258 1.46328 0.99411 0.91567 0.92125 1.25600 0.94496 0.99225 0.98092 1.69978 1.47646 1.18621 1.20585 0.85857 0.79699 0.78438 0.79909 1.19014 1.19803 1.18290 1.21027 0.97408 0.92379 0.99237 1.17064 1.06366 0.91421 0.80801 1.91499 1.93976 1.79964 1.45346 0.93455 0.92252 0.92900 0.91851 0.91376 0.92631 0.91597 0.86118 0.85363 0.72994 0.82284 0.83161 0.75407 0.96334 0.96611 0.91813 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.93 71.98 0.64 -1.57 16 2 C -0.08 -0.86 2.57 -10.80 -0.03 -0.89 16 3 C -0.14 -0.90 9.19 71.98 0.66 -0.24 16 4 C -0.13 -0.87 5.18 29.85 0.15 -0.71 16 5 C 0.51 7.58 7.39 87.66 0.65 8.22 16 6 O -0.54 -12.44 11.36 -3.05 -0.03 -12.47 16 7 N -0.66 -9.06 5.20 -303.32 -1.58 -10.63 16 8 C 0.15 3.00 6.31 38.37 0.24 3.24 16 9 C -0.10 -2.37 8.67 22.34 0.19 -2.18 16 10 C -0.07 -1.68 9.53 22.50 0.21 -1.47 16 11 C -0.13 -3.91 5.88 -20.08 -0.12 -4.03 16 12 C 0.55 21.56 7.76 86.72 0.67 22.23 16 13 O -0.59 -27.27 16.34 -3.96 -0.06 -27.33 16 14 N -0.70 -28.63 5.50 -469.95 -2.58 -31.22 16 15 C 0.23 11.37 4.50 85.63 0.38 11.75 16 16 C -0.55 -30.30 9.83 25.60 0.25 -30.05 16 17 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 18 C 0.03 1.49 5.47 84.65 0.46 1.96 16 19 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 20 Si 0.94 44.07 27.47 68.60 1.88 45.96 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 24 C -0.08 -2.20 9.56 22.55 0.22 -1.98 16 25 C 0.07 1.47 7.30 22.44 0.16 1.64 16 26 F -0.13 -2.64 16.94 44.97 0.76 -1.88 16 27 H 0.05 0.95 5.95 -2.39 -0.01 0.93 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.88 7.96 -2.38 -0.02 0.87 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 34 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.43 3.05 8.65 -92.71 -0.80 2.25 16 37 H 0.16 3.56 6.18 -2.91 -0.02 3.54 16 38 H 0.15 3.47 6.39 -2.91 -0.02 3.45 16 39 H 0.41 14.68 6.34 -92.70 -0.59 14.09 16 40 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 41 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 42 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.15 4.15 7.64 -2.91 -0.02 4.12 16 Total: -1.00 -72.61 362.60 3.07 -69.55 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.38 Total: 17.37 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.76 Total: 5.92 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.86 Total: -97.11 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.10 Total: -39.80 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.76 Total: -1.88 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -72.61 3.07 -69.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427652338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.683 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds