Wall clock time and date at job start Tue Mar 31 2020 13:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00174 * 2 1 4 4 N 1.46901 * 109.47000 * 124.11515 * 3 2 1 5 5 C 1.46901 * 111.00043 * 298.82548 * 4 3 2 6 6 C 1.50701 * 109.46850 * 288.07006 * 5 4 3 7 7 H 1.08001 * 120.00282 * 355.75278 * 6 5 4 8 8 C 1.37882 * 119.99810 * 175.74850 * 6 5 4 9 9 N 1.31513 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99760 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47096 * 90.00044 * 10 8 6 12 12 H 1.48508 * 109.47031 * 209.99520 * 10 8 6 13 13 H 1.48502 * 109.47522 * 329.99583 * 10 8 6 14 14 C 1.46912 * 110.99894 * 62.77616 * 4 3 2 15 15 C 1.50695 * 109.46621 * 66.04509 * 14 4 3 16 16 O 1.21286 * 120.00819 * 0.02562 * 15 14 4 17 17 N 1.34778 * 119.99608 * 179.97438 * 15 14 4 18 18 C 1.46506 * 120.00119 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47321 * 180.02562 * 18 17 15 20 20 C 1.33390 * 125.20137 * 89.71669 * 19 18 17 21 21 C 1.38428 * 114.91990 * 179.86243 * 20 19 18 22 22 C 1.33384 * 114.92146 * 0.42853 * 21 20 19 23 23 C 1.50699 * 125.20648 * 179.79045 * 22 21 20 24 24 C 1.53008 * 109.46891 * 90.00221 * 23 22 21 25 25 S 1.75881 * 125.20644 * 270.02694 * 19 18 17 26 26 H 1.07994 * 119.99879 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99756 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99584 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47160 * 4.11466 * 3 2 1 30 30 H 1.09003 * 109.47088 * 244.11546 * 3 2 1 31 31 H 1.08999 * 109.46816 * 48.06992 * 5 4 3 32 32 H 1.08999 * 109.47016 * 168.06837 * 5 4 3 33 33 H 0.97000 * 119.99551 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47264 * 306.04629 * 14 4 3 35 35 H 1.08998 * 109.46737 * 186.04385 * 14 4 3 36 36 H 0.96997 * 120.00259 * 0.02562 * 17 15 14 37 37 H 1.09006 * 109.47031 * 300.00864 * 18 17 15 38 38 H 1.09001 * 109.47029 * 60.00353 * 18 17 15 39 39 H 1.08001 * 122.54366 * 0.02562 * 20 19 18 40 40 H 1.07999 * 122.53604 * 180.20904 * 21 20 19 41 41 H 1.08997 * 109.47375 * 210.00503 * 23 22 21 42 42 H 1.09006 * 109.47000 * 330.01119 * 23 22 21 43 43 H 1.09001 * 109.47061 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47341 * 300.00303 * 24 23 22 45 45 H 1.09006 * 109.46565 * 60.00632 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9811 1.3407 1.1467 5 6 2.2438 1.2492 2.4139 6 6 1.5113 2.5423 2.6634 7 1 1.6403 3.3750 1.9878 8 6 0.6765 2.6624 3.7541 9 7 0.0368 3.7907 3.9716 10 14 0.4540 1.2223 4.9229 11 1 1.4691 1.3009 6.0041 12 1 -0.9063 1.2722 5.5166 13 1 0.6223 -0.0510 4.1775 14 6 3.9902 0.2776 1.0467 15 6 4.8845 0.5437 -0.1366 16 8 4.7000 1.5228 -0.8283 17 7 5.8902 -0.3057 -0.4257 18 6 6.7601 -0.0468 -1.5757 19 6 7.7951 -1.1373 -1.6784 20 6 7.6505 -2.2726 -2.3634 21 6 8.7396 -3.1257 -2.3152 22 6 9.7651 -2.6871 -1.5837 23 6 11.0597 -3.4283 -1.3701 24 6 12.0563 -3.0397 -2.4641 25 16 9.3755 -1.1112 -0.9069 26 1 -0.5399 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3576 2.1322 0.0737 30 1 2.6338 1.3954 -0.9246 31 1 1.5267 0.4301 2.3587 32 1 2.9437 1.0649 3.2290 33 1 -0.5502 3.8753 4.7391 34 1 3.4934 -0.6840 0.9177 35 1 4.5887 0.2581 1.9575 36 1 6.0381 -1.0885 0.1277 37 1 6.1618 -0.0271 -2.4867 38 1 7.2567 0.9149 -1.4464 39 1 6.7528 -2.5073 -2.9161 40 1 8.7562 -4.0760 -2.8281 41 1 11.4708 -3.1679 -0.3948 42 1 10.8749 -4.5018 -1.4117 43 1 12.9926 -3.5762 -2.3098 44 1 11.6452 -3.3002 -3.4393 45 1 12.2411 -1.9662 -2.4225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428883117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:25 Heat of formation + Delta-G solvation = 23.430086 kcal Electronic energy + Delta-G solvation = -23987.398170 eV Core-core repulsion = 20518.365363 eV Total energy + Delta-G solvation = -3469.032807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.71661 -38.50544 -36.96369 -35.20753 -33.71003 -32.77057 -32.15711 -30.21633 -28.51727 -27.03159 -25.98818 -24.12021 -23.30953 -22.53560 -20.83234 -20.46532 -19.36630 -18.83219 -17.48660 -16.76138 -16.53783 -16.07509 -15.74415 -15.30217 -14.81036 -14.58157 -14.48128 -14.29015 -14.07816 -13.83851 -13.48095 -13.39019 -13.09411 -12.61129 -12.60320 -12.43182 -12.28229 -12.20388 -11.83299 -11.57939 -11.43536 -11.30457 -11.00771 -10.97743 -10.72407 -10.57152 -10.39587 -10.04358 -9.60738 -9.25384 -9.07445 -8.86711 -8.78683 -8.69599 -8.52103 -7.33244 -6.00139 -3.96533 0.55515 1.24016 1.65970 2.32639 2.78404 2.93173 3.29561 3.33632 3.37705 3.38166 4.26849 4.39318 4.44926 4.59453 4.81499 4.89115 4.95151 5.02660 5.10331 5.28431 5.31101 5.31906 5.38269 5.45788 5.47545 5.51683 5.54816 5.70575 5.71193 5.81890 5.84572 5.90453 6.16247 6.20306 6.36428 6.41291 6.75894 6.82216 7.01571 7.12739 7.29486 7.49826 7.64806 7.92475 8.02344 8.46837 8.70585 9.11728 9.61447 11.13172 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002313 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.277017 B =12103.951530 C =12477.780772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.188 4.188 3 C 0.083 3.917 4 N -0.501 5.501 5 C 0.159 3.841 6 C -0.501 4.501 7 H 0.082 0.918 8 C 0.068 3.932 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.031 3.969 15 C 0.517 3.483 16 O -0.514 6.514 17 N -0.738 5.738 18 C 0.195 3.805 19 C -0.202 4.202 20 C -0.113 4.113 21 C -0.143 4.143 22 C -0.172 4.172 23 C -0.055 4.055 24 C -0.148 4.148 25 S 0.117 5.883 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.001 0.999 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.399 0.601 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.619 -18.165 -12.665 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C -0.044 4.044 4 N -0.224 5.224 5 C 0.033 3.967 6 C -0.539 4.539 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.101 4.101 15 C 0.303 3.697 16 O -0.388 6.388 17 N -0.393 5.393 18 C 0.070 3.930 19 C -0.319 4.319 20 C -0.144 4.144 21 C -0.173 4.173 22 C -0.290 4.290 23 C -0.094 4.094 24 C -0.206 4.206 25 S 0.382 5.618 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.019 0.981 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.233 0.767 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.360 -15.806 -12.104 29.199 hybrid contribution -1.302 -3.045 0.192 3.317 sum 20.058 -18.851 -11.911 29.993 Atomic orbital electron populations 1.23788 0.96050 1.01385 1.00510 1.23657 0.96883 0.99879 1.00349 1.21454 0.94677 0.94052 0.94243 1.61999 1.14618 1.41894 1.03850 1.20288 0.92541 0.98001 0.85864 1.20986 1.24262 0.97926 1.10772 0.90036 1.24876 0.95496 0.95486 0.97438 1.69895 1.29830 1.25047 1.29208 0.86926 0.77633 0.83874 0.81721 1.20277 1.21262 1.19195 1.22009 0.95680 0.95909 0.96483 1.20925 0.80316 0.82230 0.86217 1.90672 1.70026 1.27438 1.50645 1.46163 1.32820 1.28933 1.31404 1.19550 0.88644 0.94318 0.90472 1.24479 0.99414 1.01217 1.06823 1.20168 1.00073 0.93205 1.01001 1.20065 0.93088 1.01841 1.02273 1.24631 1.00768 0.99204 1.04380 1.20123 0.90169 0.99199 0.99898 1.21796 0.98380 1.01955 0.98486 1.84443 1.10471 1.16442 1.50395 0.87991 0.89705 0.88953 0.89194 0.89817 0.98134 0.96220 0.92755 0.92627 0.88446 0.76695 0.89771 0.90525 0.84127 0.84378 0.90716 0.89965 0.91975 0.92264 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 14.32 29.01 0.42 -2.70 16 2 C -0.19 -3.37 7.45 -36.03 -0.27 -3.64 16 3 C 0.08 1.70 5.31 -4.98 -0.03 1.67 16 4 N -0.50 -10.75 4.39 -238.96 -1.05 -11.80 16 5 C 0.16 3.83 3.68 -4.98 -0.02 3.81 16 6 C -0.50 -14.36 9.07 -34.44 -0.31 -14.68 16 7 H 0.08 2.59 7.89 -52.49 -0.41 2.18 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 10 Si 0.87 21.48 27.55 -169.99 -4.68 16.80 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.32 6.42 56.52 0.36 -5.95 16 14 C 0.03 0.51 5.27 -4.97 -0.03 0.49 16 15 C 0.52 8.15 7.53 -10.99 -0.08 8.07 16 16 O -0.51 -10.10 14.33 5.55 0.08 -10.02 16 17 N -0.74 -8.57 5.55 -61.47 -0.34 -8.91 16 18 C 0.20 2.09 6.16 -5.19 -0.03 2.06 16 19 C -0.20 -1.84 5.88 -36.01 -0.21 -2.05 16 20 C -0.11 -0.92 10.05 -41.21 -0.41 -1.34 16 21 C -0.14 -1.07 10.05 -41.21 -0.41 -1.48 16 22 C -0.17 -1.29 5.76 -36.01 -0.21 -1.50 16 23 C -0.05 -0.30 6.43 -27.88 -0.18 -0.48 16 24 C -0.15 -0.73 9.90 37.16 0.37 -0.36 16 25 S 0.12 1.01 23.31 -107.50 -2.51 -1.50 16 26 H 0.10 1.87 7.84 -52.49 -0.41 1.46 16 27 H 0.08 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.09 1.48 6.76 -52.48 -0.35 1.13 16 29 H 0.09 2.05 6.99 -51.93 -0.36 1.69 16 30 H 0.08 1.68 5.84 -51.93 -0.30 1.38 16 31 H 0.00 0.02 5.52 -51.93 -0.29 -0.26 16 32 H 0.02 0.47 7.45 -51.93 -0.39 0.08 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.06 0.82 6.27 -51.93 -0.33 0.50 16 35 H 0.10 1.48 7.86 -51.93 -0.41 1.07 16 36 H 0.40 3.74 8.46 -40.82 -0.35 3.40 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -33.23 382.44 -10.47 -43.70 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.00 Total: 3.24 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.51 Total: -10.24 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.62 Total: -47.74 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.68 Total: 16.80 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.23 -10.47 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428883117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.135 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds