Wall clock time and date at job start Tue Mar 31 2020 13:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00174 * 2 1 4 4 N 1.46901 * 109.47000 * 124.11515 * 3 2 1 5 5 C 1.46901 * 111.00043 * 298.82548 * 4 3 2 6 6 C 1.50701 * 109.46850 * 288.07006 * 5 4 3 7 7 H 1.08001 * 120.00282 * 355.75278 * 6 5 4 8 8 C 1.37882 * 119.99810 * 175.74850 * 6 5 4 9 9 N 1.31513 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99760 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47096 * 90.00044 * 10 8 6 12 12 H 1.48508 * 109.47031 * 209.99520 * 10 8 6 13 13 H 1.48502 * 109.47522 * 329.99583 * 10 8 6 14 14 C 1.46912 * 110.99894 * 62.77616 * 4 3 2 15 15 C 1.50695 * 109.46621 * 66.04509 * 14 4 3 16 16 O 1.21286 * 120.00819 * 0.02562 * 15 14 4 17 17 N 1.34778 * 119.99608 * 179.97438 * 15 14 4 18 18 C 1.46506 * 120.00119 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47321 * 180.02562 * 18 17 15 20 20 C 1.33390 * 125.20137 * 89.71669 * 19 18 17 21 21 C 1.38428 * 114.91990 * 179.86243 * 20 19 18 22 22 C 1.33384 * 114.92146 * 0.42853 * 21 20 19 23 23 C 1.50699 * 125.20648 * 179.79045 * 22 21 20 24 24 C 1.53008 * 109.46891 * 90.00221 * 23 22 21 25 25 S 1.75881 * 125.20644 * 270.02694 * 19 18 17 26 26 H 1.07994 * 119.99879 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99756 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99584 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47160 * 4.11466 * 3 2 1 30 30 H 1.09003 * 109.47088 * 244.11546 * 3 2 1 31 31 H 1.08999 * 109.46816 * 48.06992 * 5 4 3 32 32 H 1.08999 * 109.47016 * 168.06837 * 5 4 3 33 33 H 0.97000 * 119.99551 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47264 * 306.04629 * 14 4 3 35 35 H 1.08998 * 109.46737 * 186.04385 * 14 4 3 36 36 H 0.96997 * 120.00259 * 0.02562 * 17 15 14 37 37 H 1.09006 * 109.47031 * 300.00864 * 18 17 15 38 38 H 1.09001 * 109.47029 * 60.00353 * 18 17 15 39 39 H 1.08001 * 122.54366 * 0.02562 * 20 19 18 40 40 H 1.07999 * 122.53604 * 180.20904 * 21 20 19 41 41 H 1.08997 * 109.47375 * 210.00503 * 23 22 21 42 42 H 1.09006 * 109.47000 * 330.01119 * 23 22 21 43 43 H 1.09001 * 109.47061 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47341 * 300.00303 * 24 23 22 45 45 H 1.09006 * 109.46565 * 60.00632 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9811 1.3407 1.1467 5 6 2.2438 1.2492 2.4139 6 6 1.5113 2.5423 2.6634 7 1 1.6403 3.3750 1.9878 8 6 0.6765 2.6624 3.7541 9 7 0.0368 3.7907 3.9716 10 14 0.4540 1.2223 4.9229 11 1 1.4691 1.3009 6.0041 12 1 -0.9063 1.2722 5.5166 13 1 0.6223 -0.0510 4.1775 14 6 3.9902 0.2776 1.0467 15 6 4.8845 0.5437 -0.1366 16 8 4.7000 1.5228 -0.8283 17 7 5.8902 -0.3057 -0.4257 18 6 6.7601 -0.0468 -1.5757 19 6 7.7951 -1.1373 -1.6784 20 6 7.6505 -2.2726 -2.3634 21 6 8.7396 -3.1257 -2.3152 22 6 9.7651 -2.6871 -1.5837 23 6 11.0597 -3.4283 -1.3701 24 6 12.0563 -3.0397 -2.4641 25 16 9.3755 -1.1112 -0.9069 26 1 -0.5399 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3576 2.1322 0.0737 30 1 2.6338 1.3954 -0.9246 31 1 1.5267 0.4301 2.3587 32 1 2.9437 1.0649 3.2290 33 1 -0.5502 3.8753 4.7391 34 1 3.4934 -0.6840 0.9177 35 1 4.5887 0.2581 1.9575 36 1 6.0381 -1.0885 0.1277 37 1 6.1618 -0.0271 -2.4867 38 1 7.2567 0.9149 -1.4464 39 1 6.7528 -2.5073 -2.9161 40 1 8.7562 -4.0760 -2.8281 41 1 11.4708 -3.1679 -0.3948 42 1 10.8749 -4.5018 -1.4117 43 1 12.9926 -3.5762 -2.3098 44 1 11.6452 -3.3002 -3.4393 45 1 12.2411 -1.9662 -2.4225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428883117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:24 Heat of formation + Delta-G solvation = 1.243270 kcal Electronic energy + Delta-G solvation = -23988.360263 eV Core-core repulsion = 20518.365363 eV Total energy + Delta-G solvation = -3469.994899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97551 -39.21398 -38.43094 -36.14281 -34.77305 -34.40468 -33.78436 -31.25202 -30.09910 -28.35896 -26.90369 -25.65187 -24.18885 -23.07778 -22.56511 -21.69733 -20.53300 -19.78453 -18.85759 -18.28245 -17.73975 -17.10204 -17.02250 -16.31517 -16.02335 -16.00564 -15.77089 -15.44141 -15.05278 -14.86271 -14.72629 -14.46768 -14.33486 -13.99049 -13.76119 -13.34783 -13.30789 -13.03114 -12.81264 -12.74877 -12.71570 -12.40769 -12.30486 -12.21164 -12.16671 -11.91120 -11.86699 -11.55830 -11.54343 -10.87162 -10.74314 -10.23443 -10.09350 -9.51682 -9.43400 -8.93741 -8.23609 -6.26605 -0.07894 0.60832 1.04409 1.36387 1.38017 1.40055 1.49486 1.67665 1.69869 2.28395 2.37778 3.09942 3.37501 3.60915 3.82999 3.92548 4.03847 4.15290 4.19701 4.22181 4.40895 4.42441 4.44802 4.51177 4.60587 4.61677 4.74061 4.84567 4.92363 4.97571 4.99291 5.03570 5.05763 5.22865 5.25662 5.30815 5.35493 5.38515 5.57908 5.58941 5.66950 5.82408 6.05132 6.31684 6.52517 6.71255 6.79629 7.29647 7.36242 8.93777 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002313 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.277017 B =12103.951530 C =12477.780772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.193 4.193 3 C 0.091 3.909 4 N -0.529 5.529 5 C 0.172 3.828 6 C -0.509 4.509 7 H 0.026 0.974 8 C 0.004 3.996 9 N -0.952 5.952 10 Si 0.948 3.052 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.242 1.242 14 C 0.030 3.970 15 C 0.520 3.480 16 O -0.562 6.562 17 N -0.716 5.716 18 C 0.200 3.800 19 C -0.216 4.216 20 C -0.104 4.104 21 C -0.150 4.150 22 C -0.165 4.165 23 C -0.056 4.056 24 C -0.147 4.147 25 S 0.094 5.906 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.008 0.992 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.414 0.586 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.979 -22.692 -12.314 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.212 4.212 3 C -0.037 4.037 4 N -0.252 5.252 5 C 0.046 3.954 6 C -0.548 4.548 7 H 0.044 0.956 8 C -0.192 4.192 9 N -0.593 5.593 10 Si 0.771 3.229 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.165 1.165 14 C -0.101 4.101 15 C 0.307 3.693 16 O -0.439 6.439 17 N -0.371 5.371 18 C 0.075 3.925 19 C -0.334 4.334 20 C -0.136 4.136 21 C -0.180 4.180 22 C -0.283 4.283 23 C -0.095 4.095 24 C -0.205 4.205 25 S 0.360 5.640 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.170 0.830 40 H 0.177 0.823 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.768 -20.381 -11.769 32.746 hybrid contribution -1.631 -1.582 -0.039 2.273 sum 21.137 -21.964 -11.808 32.689 Atomic orbital electron populations 1.23946 0.96094 1.01958 0.99548 1.23627 0.97014 0.99447 1.01120 1.21212 0.94082 0.94367 0.93999 1.61763 1.15380 1.45174 1.02882 1.20005 0.92622 0.95212 0.87586 1.21205 1.25101 0.98639 1.09846 0.95582 1.25888 0.94918 0.98862 0.99542 1.70079 1.31026 1.27941 1.30301 0.85701 0.77730 0.80329 0.79107 1.18942 1.21131 1.16533 1.22103 0.94813 0.95479 0.97692 1.20813 0.80840 0.82015 0.85650 1.90666 1.71502 1.29573 1.52190 1.45949 1.31353 1.28317 1.31433 1.19471 0.88743 0.94520 0.89799 1.24239 0.99270 1.01343 1.08515 1.20391 1.00672 0.92650 0.99936 1.20302 0.92657 1.02585 1.02417 1.24942 1.01554 0.98222 1.03545 1.20235 0.89253 0.99829 1.00204 1.21787 0.98898 1.01517 0.98275 1.84534 1.10631 1.17920 1.50964 0.90219 0.86374 0.85806 0.93488 0.89906 0.97412 0.94995 0.92600 0.89683 0.86685 0.74981 0.89945 0.91895 0.82983 0.82313 0.90424 0.88373 0.90630 0.92300 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.91 14.32 67.77 0.97 -4.94 16 2 C -0.19 -6.57 7.45 25.64 0.19 -6.38 16 3 C 0.09 3.79 5.31 85.56 0.45 4.25 16 4 N -0.53 -22.66 4.39 -909.92 -4.00 -26.66 16 5 C 0.17 8.16 3.68 85.56 0.32 8.48 16 6 C -0.51 -30.22 9.07 25.60 0.23 -29.99 16 7 H 0.03 1.78 7.89 -2.91 -0.02 1.75 16 8 C 0.00 0.26 5.47 84.66 0.46 0.72 16 9 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 10 Si 0.95 43.75 27.55 68.60 1.89 45.64 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.24 -10.12 6.42 99.48 0.64 -9.48 16 14 C 0.03 0.93 5.27 85.55 0.45 1.38 16 15 C 0.52 15.86 7.53 87.66 0.66 16.52 16 16 O -0.56 -22.42 14.33 -3.05 -0.04 -22.46 16 17 N -0.72 -15.41 5.55 -466.78 -2.59 -18.00 16 18 C 0.20 4.13 6.16 85.63 0.53 4.66 16 19 C -0.22 -3.62 5.88 24.59 0.14 -3.48 16 20 C -0.10 -1.47 10.05 21.22 0.21 -1.25 16 21 C -0.15 -1.83 10.05 21.22 0.21 -1.61 16 22 C -0.16 -2.10 5.76 24.59 0.14 -1.96 16 23 C -0.06 -0.47 6.43 29.85 0.19 -0.28 16 24 C -0.15 -1.15 9.90 71.98 0.71 -0.43 16 25 S 0.09 1.51 23.31 -56.49 -1.32 0.19 16 26 H 0.08 2.98 7.84 -2.91 -0.02 2.96 16 27 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 28 H 0.12 3.46 6.76 -2.91 -0.02 3.44 16 29 H 0.05 2.31 6.99 -2.39 -0.02 2.29 16 30 H 0.08 3.44 5.84 -2.39 -0.01 3.43 16 31 H 0.01 0.38 5.52 -2.39 -0.01 0.36 16 32 H 0.03 1.44 7.45 -2.39 -0.02 1.42 16 33 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 34 H 0.09 2.15 6.27 -2.39 -0.01 2.14 16 35 H 0.12 3.14 7.86 -2.39 -0.02 3.12 16 36 H 0.41 6.61 8.46 -92.71 -0.78 5.83 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -75.77 382.44 0.25 -75.51 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.13 Total: 20.74 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 5.88 Total: -14.33 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -6.29 Total: -105.29 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.04 Total: -22.46 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.89 Total: 45.64 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.32 Total: 0.19 kcal Total: -75.77 0.25 -75.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428883117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.758 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds