Wall clock time and date at job start Tue Mar 31 2020 14:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00359 * 2 1 4 4 C 1.46898 * 111.00000 * 123.95574 * 2 1 3 5 5 C 1.53005 * 109.47100 * 76.25641 * 4 2 1 6 6 C 1.53001 * 109.47050 * 173.27390 * 5 4 2 7 7 C 1.52999 * 109.47310 * 53.27652 * 5 4 2 8 8 N 1.46495 * 109.47189 * 293.27741 * 5 4 2 9 9 C 1.34772 * 120.00424 * 174.63999 * 8 5 4 10 10 O 1.21555 * 119.99666 * 359.97438 * 9 8 5 11 11 C 1.47863 * 120.00418 * 179.97438 * 9 8 5 12 12 C 1.39674 * 120.10212 * 359.97438 * 11 9 8 13 13 C 1.38031 * 120.03998 * 180.02562 * 12 11 9 14 14 C 1.38182 * 120.24496 * 359.68099 * 13 12 11 15 15 C 1.39178 * 120.20150 * 0.59321 * 14 13 12 16 16 S 1.76198 * 120.02338 * 179.69910 * 15 14 13 17 17 C 1.76197 * 100.00089 * 264.79090 * 16 15 14 18 18 H 1.08009 * 119.99729 * 5.01071 * 17 16 15 19 19 C 1.38731 * 120.00210 * 185.01503 * 17 16 15 20 20 N 1.31620 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47225 * 59.99212 * 21 19 17 23 23 H 1.48495 * 109.47025 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.46873 * 299.99565 * 21 19 17 25 25 C 1.38880 * 119.95707 * 359.43263 * 15 14 13 26 26 H 1.08997 * 109.47214 * 285.18322 * 1 2 3 27 27 H 1.09004 * 109.46614 * 45.18444 * 1 2 3 28 28 H 1.09005 * 109.47147 * 165.18169 * 1 2 3 29 29 H 1.09000 * 109.47329 * 183.95646 * 3 2 1 30 30 H 1.09003 * 109.47339 * 303.95883 * 3 2 1 31 31 H 1.09001 * 109.46890 * 63.95190 * 3 2 1 32 32 H 1.08996 * 109.47410 * 316.25754 * 4 2 1 33 33 H 1.09000 * 109.47316 * 196.25077 * 4 2 1 34 34 H 1.08998 * 109.46806 * 175.39472 * 6 5 4 35 35 H 1.08999 * 109.47699 * 295.39959 * 6 5 4 36 36 H 1.09005 * 109.47086 * 55.40028 * 6 5 4 37 37 H 1.09003 * 109.46967 * 300.00038 * 7 5 4 38 38 H 1.09007 * 109.47044 * 59.99921 * 7 5 4 39 39 H 1.08998 * 109.47431 * 179.97438 * 7 5 4 40 40 H 0.97000 * 120.00217 * 354.63936 * 8 5 4 41 41 H 1.08006 * 119.97536 * 0.02562 * 12 11 9 42 42 H 1.08004 * 119.87714 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.89982 * 180.30064 * 14 13 12 44 44 H 0.96989 * 120.00480 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.12084 * 180.25085 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.8582 -2.2628 0.8517 6 6 2.5557 -3.0590 1.9565 7 6 2.5058 -2.5861 -0.4963 8 7 0.4391 -2.6241 0.8108 9 6 0.0716 -3.8741 0.4662 10 8 0.9176 -4.7017 0.1888 11 6 -1.3608 -4.2390 0.4254 12 6 -2.3347 -3.2899 0.7443 13 6 -3.6714 -3.6321 0.7064 14 6 -4.0527 -4.9107 0.3471 15 6 -3.0905 -5.8660 0.0330 16 16 -3.5816 -7.4973 -0.4168 17 6 -3.4483 -8.2989 1.1466 18 1 -3.2091 -7.7245 2.0294 19 6 -3.6506 -9.6680 1.2436 20 7 -3.9425 -10.3680 0.1679 21 14 -3.5100 -10.5178 2.9012 22 1 -4.5058 -9.9405 3.8395 23 1 -3.7686 -11.9707 2.7361 24 1 -2.1428 -10.3176 3.4456 25 6 -1.7432 -5.5311 0.0689 26 1 -0.3633 0.2691 0.9918 27 1 -0.3633 0.7244 -0.7291 28 1 -0.3634 -0.9935 -0.2628 29 1 3.0828 1.3431 -0.0709 30 1 1.5898 1.9164 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.4325 -0.5147 2.0365 33 1 3.0467 -0.5195 1.2863 34 1 2.3884 -4.1243 1.7974 35 1 3.6255 -2.8518 1.9338 36 1 2.1498 -2.7683 2.9255 37 1 2.0089 -2.0189 -1.2834 38 1 3.5617 -2.3173 -0.4659 39 1 2.4085 -3.6525 -0.6997 40 1 -0.2361 -1.9637 1.0318 41 1 -2.0417 -2.2878 1.0207 42 1 -4.4223 -2.8963 0.9538 43 1 -5.1004 -5.1710 0.3146 44 1 -4.0843 -11.3251 0.2358 45 1 -0.9944 -6.2691 -0.1783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457214685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:35 Heat of formation + Delta-G solvation = 1.552061 kcal Electronic energy + Delta-G solvation = -25005.407397 eV Core-core repulsion = 21535.425888 eV Total energy + Delta-G solvation = -3469.981509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52656 -38.59889 -37.51608 -35.15048 -32.55029 -32.49296 -30.58236 -30.12112 -27.97507 -27.25145 -27.21293 -25.55894 -23.96980 -22.56822 -22.28935 -20.63358 -19.61348 -18.31501 -17.38832 -16.25782 -15.96214 -15.79675 -15.29529 -15.16815 -14.84289 -14.78664 -14.61057 -14.27764 -13.80543 -13.49076 -13.34595 -13.15925 -12.96524 -12.84808 -12.43415 -12.26641 -12.13769 -11.97353 -11.81341 -11.76461 -11.60642 -11.22664 -11.17795 -11.12900 -11.06900 -10.92206 -10.70244 -9.93900 -9.47036 -9.13804 -9.04682 -8.98786 -8.70851 -8.55776 -8.02016 -6.70036 -6.27358 -4.01294 1.19154 1.67980 3.07545 3.14674 3.22829 3.24800 3.27577 3.48087 3.53543 4.10879 4.28067 4.43069 4.68635 4.78791 4.86537 4.95447 5.01721 5.08131 5.09807 5.12733 5.18640 5.24122 5.30665 5.33318 5.48668 5.49032 5.54424 5.62756 5.70980 5.80659 5.82699 5.88922 5.99961 6.09082 6.21209 6.27834 6.44015 6.58697 6.62717 6.63679 6.64224 6.65260 6.94943 7.20882 7.57608 7.58400 8.33491 8.38776 9.18272 10.79368 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.002976 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.358464 B = 9407.076769 C =10071.756719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.540 5.540 3 C 0.024 3.976 4 C 0.051 3.949 5 C 0.180 3.820 6 C -0.163 4.163 7 C -0.155 4.155 8 N -0.727 5.727 9 C 0.565 3.435 10 O -0.528 6.528 11 C -0.154 4.154 12 C -0.093 4.093 13 C -0.140 4.140 14 C -0.057 4.057 15 C -0.106 4.106 16 S -0.034 6.034 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.870 5.870 21 Si 0.920 3.080 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.019 4.019 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.396 0.604 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 23.204 2.165 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.263 5.263 3 C -0.124 4.124 4 C -0.077 4.077 5 C 0.095 3.905 6 C -0.222 4.222 7 C -0.213 4.213 8 N -0.383 5.383 9 C 0.353 3.647 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.112 4.112 13 C -0.160 4.160 14 C -0.078 4.078 15 C -0.216 4.216 16 S 0.200 5.800 17 C -0.667 4.667 18 H 0.093 0.907 19 C -0.135 4.135 20 N -0.506 5.506 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.040 4.040 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.234 0.766 41 H 0.130 0.870 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.327 21.720 0.421 23.641 hybrid contribution -0.177 0.879 3.141 3.267 sum 9.150 22.599 3.563 24.640 Atomic orbital electron populations 1.22816 0.87513 1.03636 1.00348 1.61929 1.07948 1.13597 1.42824 1.22424 1.00826 0.88699 1.00481 1.22500 1.01204 0.92740 0.91303 1.20330 0.80835 0.92379 0.97001 1.22205 1.00006 1.02708 0.97275 1.22122 0.99449 1.04049 0.95690 1.46454 1.07965 1.12690 1.71181 1.18357 0.88533 0.81658 0.76123 1.90700 1.52199 1.49414 1.48186 1.19930 0.92129 0.95943 1.07841 1.21096 0.93216 0.97657 0.99232 1.21038 0.95459 0.96955 1.02559 1.21945 1.00001 0.92221 0.93611 1.22855 0.94464 1.02816 1.01501 1.83601 1.86088 0.93741 1.16564 1.22792 1.55911 0.95127 0.92891 0.90699 1.24995 0.94424 0.96156 0.97962 1.69970 1.44560 1.07877 1.28162 0.86185 0.79004 0.78054 0.82126 1.19843 1.20730 1.19785 1.21950 0.96097 0.94126 0.91862 0.95351 0.91087 0.89986 0.91266 0.91233 0.95751 0.93992 0.89290 0.90179 0.91791 0.92905 0.91408 0.92748 0.90097 0.76552 0.86964 0.85947 0.85114 0.91997 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 8.39 60.06 0.50 0.54 16 2 N -0.54 -4.37 3.89 -251.26 -0.98 -5.35 16 3 C 0.02 0.15 9.48 60.06 0.57 0.72 16 4 C 0.05 0.41 4.25 -3.82 -0.02 0.40 16 5 C 0.18 1.93 0.82 -131.82 -0.11 1.82 16 6 C -0.16 -1.79 8.53 37.16 0.32 -1.47 16 7 C -0.16 -1.86 8.08 37.16 0.30 -1.56 16 8 N -0.73 -8.64 3.81 -48.54 -0.19 -8.83 16 9 C 0.56 9.03 7.18 -12.32 -0.09 8.94 16 10 O -0.53 -10.03 12.56 5.32 0.07 -9.96 16 11 C -0.15 -2.59 5.87 -104.99 -0.62 -3.20 16 12 C -0.09 -1.28 9.54 -39.12 -0.37 -1.65 16 13 C -0.14 -2.01 10.02 -39.68 -0.40 -2.40 16 14 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 15 C -0.11 -2.26 5.45 -38.99 -0.21 -2.48 16 16 S -0.03 -0.89 21.41 -107.50 -2.30 -3.20 16 17 C -0.52 -14.73 9.46 30.91 0.29 -14.44 16 18 H 0.07 2.10 7.79 -52.48 -0.41 1.69 16 19 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 20 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 21 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 26 H 0.03 0.18 7.83 -51.93 -0.41 -0.22 16 27 H 0.07 0.48 7.92 -51.93 -0.41 0.06 16 28 H 0.08 0.72 5.52 -51.93 -0.29 0.43 16 29 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.01 -51.93 -0.42 -0.02 16 31 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.04 0.32 7.79 -51.93 -0.40 -0.09 16 33 H 0.09 0.62 7.88 -51.93 -0.41 0.21 16 34 H 0.08 1.13 6.47 -51.93 -0.34 0.79 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.84 7.43 -51.93 -0.39 0.46 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.21 5.79 -51.93 -0.30 0.91 16 40 H 0.40 3.88 3.78 -40.82 -0.15 3.72 16 41 H 0.11 1.11 6.40 -52.48 -0.34 0.78 16 42 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.14 3.08 7.65 -52.49 -0.40 2.67 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -31.99 372.78 -9.49 -41.48 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.75 Total: 3.49 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.67 Total: -14.95 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.43 Total: -39.01 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.99 -9.49 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457214685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.035 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds