Wall clock time and date at job start Tue Mar 31 2020 14:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00359 * 2 1 4 4 C 1.46898 * 111.00000 * 123.95574 * 2 1 3 5 5 C 1.53005 * 109.47100 * 76.25641 * 4 2 1 6 6 C 1.53001 * 109.47050 * 173.27390 * 5 4 2 7 7 C 1.52999 * 109.47310 * 53.27652 * 5 4 2 8 8 N 1.46495 * 109.47189 * 293.27741 * 5 4 2 9 9 C 1.34772 * 120.00424 * 174.63999 * 8 5 4 10 10 O 1.21555 * 119.99666 * 359.97438 * 9 8 5 11 11 C 1.47863 * 120.00418 * 179.97438 * 9 8 5 12 12 C 1.39674 * 120.10212 * 359.97438 * 11 9 8 13 13 C 1.38031 * 120.03998 * 180.02562 * 12 11 9 14 14 C 1.38182 * 120.24496 * 359.68099 * 13 12 11 15 15 C 1.39178 * 120.20150 * 0.59321 * 14 13 12 16 16 S 1.76198 * 120.02338 * 179.69910 * 15 14 13 17 17 C 1.76197 * 100.00089 * 264.79090 * 16 15 14 18 18 H 1.08009 * 119.99729 * 5.01071 * 17 16 15 19 19 C 1.38731 * 120.00210 * 185.01503 * 17 16 15 20 20 N 1.31620 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47225 * 59.99212 * 21 19 17 23 23 H 1.48495 * 109.47025 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.46873 * 299.99565 * 21 19 17 25 25 C 1.38880 * 119.95707 * 359.43263 * 15 14 13 26 26 H 1.08997 * 109.47214 * 285.18322 * 1 2 3 27 27 H 1.09004 * 109.46614 * 45.18444 * 1 2 3 28 28 H 1.09005 * 109.47147 * 165.18169 * 1 2 3 29 29 H 1.09000 * 109.47329 * 183.95646 * 3 2 1 30 30 H 1.09003 * 109.47339 * 303.95883 * 3 2 1 31 31 H 1.09001 * 109.46890 * 63.95190 * 3 2 1 32 32 H 1.08996 * 109.47410 * 316.25754 * 4 2 1 33 33 H 1.09000 * 109.47316 * 196.25077 * 4 2 1 34 34 H 1.08998 * 109.46806 * 175.39472 * 6 5 4 35 35 H 1.08999 * 109.47699 * 295.39959 * 6 5 4 36 36 H 1.09005 * 109.47086 * 55.40028 * 6 5 4 37 37 H 1.09003 * 109.46967 * 300.00038 * 7 5 4 38 38 H 1.09007 * 109.47044 * 59.99921 * 7 5 4 39 39 H 1.08998 * 109.47431 * 179.97438 * 7 5 4 40 40 H 0.97000 * 120.00217 * 354.63936 * 8 5 4 41 41 H 1.08006 * 119.97536 * 0.02562 * 12 11 9 42 42 H 1.08004 * 119.87714 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.89982 * 180.30064 * 14 13 12 44 44 H 0.96989 * 120.00480 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.12084 * 180.25085 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.8582 -2.2628 0.8517 6 6 2.5557 -3.0590 1.9565 7 6 2.5058 -2.5861 -0.4963 8 7 0.4391 -2.6241 0.8108 9 6 0.0716 -3.8741 0.4662 10 8 0.9176 -4.7017 0.1888 11 6 -1.3608 -4.2390 0.4254 12 6 -2.3347 -3.2899 0.7443 13 6 -3.6714 -3.6321 0.7064 14 6 -4.0527 -4.9107 0.3471 15 6 -3.0905 -5.8660 0.0330 16 16 -3.5816 -7.4973 -0.4168 17 6 -3.4483 -8.2989 1.1466 18 1 -3.2091 -7.7245 2.0294 19 6 -3.6506 -9.6680 1.2436 20 7 -3.9425 -10.3680 0.1679 21 14 -3.5100 -10.5178 2.9012 22 1 -4.5058 -9.9405 3.8395 23 1 -3.7686 -11.9707 2.7361 24 1 -2.1428 -10.3176 3.4456 25 6 -1.7432 -5.5311 0.0689 26 1 -0.3633 0.2691 0.9918 27 1 -0.3633 0.7244 -0.7291 28 1 -0.3634 -0.9935 -0.2628 29 1 3.0828 1.3431 -0.0709 30 1 1.5898 1.9164 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.4325 -0.5147 2.0365 33 1 3.0467 -0.5195 1.2863 34 1 2.3884 -4.1243 1.7974 35 1 3.6255 -2.8518 1.9338 36 1 2.1498 -2.7683 2.9255 37 1 2.0089 -2.0189 -1.2834 38 1 3.5617 -2.3173 -0.4659 39 1 2.4085 -3.6525 -0.6997 40 1 -0.2361 -1.9637 1.0318 41 1 -2.0417 -2.2878 1.0207 42 1 -4.4223 -2.8963 0.9538 43 1 -5.1004 -5.1710 0.3146 44 1 -4.0843 -11.3251 0.2358 45 1 -0.9944 -6.2691 -0.1783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457214685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:34 Heat of formation + Delta-G solvation = -18.674507 kcal Electronic energy + Delta-G solvation = -25006.284487 eV Core-core repulsion = 21535.425888 eV Total energy + Delta-G solvation = -3470.858599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64453 -39.71504 -38.58624 -36.03186 -34.65943 -33.69903 -31.95389 -31.37879 -28.49693 -28.13432 -27.90639 -27.74862 -25.20923 -23.72468 -23.22549 -21.73037 -20.68672 -19.98160 -18.99191 -17.22307 -17.14996 -16.93827 -16.70594 -16.45364 -16.03522 -15.86282 -15.61897 -15.50008 -15.18852 -14.76048 -14.62321 -14.22308 -14.01566 -13.84485 -13.33340 -13.29775 -13.17686 -13.03984 -12.96726 -12.92915 -12.71019 -12.58677 -12.53772 -12.40490 -12.39113 -12.12078 -11.86175 -11.75376 -11.22981 -10.85892 -10.61182 -10.15367 -9.87562 -9.70136 -9.24003 -8.80895 -8.39546 -6.19666 -0.16669 0.25661 1.28700 1.38165 1.44295 1.64638 1.84923 2.10088 2.24737 2.81475 2.93361 2.98615 3.41488 3.56972 3.84138 3.93668 3.97446 4.03263 4.17059 4.28510 4.36802 4.41300 4.47551 4.53366 4.63989 4.66134 4.71375 4.76420 4.78799 4.83071 4.92234 4.97514 5.05785 5.09337 5.10086 5.20550 5.30666 5.32616 5.37554 5.47767 5.50807 5.62312 5.86375 6.06997 6.10623 6.14994 6.52804 7.00497 7.21775 8.67408 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.002976 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.358464 B = 9407.076769 C =10071.756719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.557 5.557 3 C 0.025 3.975 4 C 0.059 3.941 5 C 0.177 3.823 6 C -0.161 4.161 7 C -0.149 4.149 8 N -0.704 5.704 9 C 0.561 3.439 10 O -0.567 6.567 11 C -0.156 4.156 12 C -0.067 4.067 13 C -0.119 4.119 14 C -0.064 4.064 15 C -0.127 4.127 16 S -0.095 6.095 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.020 3.980 20 N -0.906 5.906 21 Si 0.991 3.009 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.045 4.045 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.409 0.591 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.135 0.865 44 H 0.274 0.726 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 27.426 4.510 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.281 5.281 3 C -0.122 4.122 4 C -0.069 4.069 5 C 0.092 3.908 6 C -0.219 4.219 7 C -0.207 4.207 8 N -0.360 5.360 9 C 0.349 3.651 10 O -0.448 6.448 11 C -0.161 4.161 12 C -0.086 4.086 13 C -0.138 4.138 14 C -0.085 4.085 15 C -0.238 4.238 16 S 0.139 5.861 17 C -0.683 4.683 18 H 0.085 0.915 19 C -0.186 4.186 20 N -0.543 5.543 21 Si 0.813 3.187 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.067 4.067 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.251 0.749 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.308 25.999 2.767 27.753 hybrid contribution -0.105 -0.223 2.354 2.367 sum 9.203 25.775 5.121 27.844 Atomic orbital electron populations 1.22824 0.87261 1.02937 1.01566 1.61870 1.08473 1.14803 1.42983 1.22434 1.01078 0.87611 1.01095 1.22416 1.02571 0.90101 0.91828 1.20499 0.79623 0.94642 0.96068 1.22164 1.01561 1.00270 0.97946 1.22021 1.00729 1.01434 0.96512 1.46332 1.09191 1.11189 1.69296 1.18342 0.87838 0.82646 0.76251 1.90704 1.53025 1.50955 1.50074 1.20063 0.93691 0.95019 1.07357 1.21635 0.92226 0.98875 0.95841 1.21533 0.96812 0.95865 0.99605 1.22062 0.99470 0.93242 0.93757 1.22499 0.95651 1.00477 1.05209 1.83480 1.86745 0.98496 1.17352 1.23024 1.56033 0.95892 0.93385 0.91502 1.26008 0.93740 0.96741 1.02075 1.70096 1.45433 1.08257 1.30471 0.85109 0.79138 0.77246 0.77221 1.18455 1.19517 1.19585 1.21613 0.95006 0.95571 0.94505 0.93646 0.90373 0.91515 0.90844 0.90942 0.94814 0.92527 0.87731 0.94020 0.89816 0.91562 0.91920 0.91070 0.93771 0.74941 0.81683 0.80682 0.84683 0.91676 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 8.39 127.69 1.07 1.10 16 2 N -0.56 -7.02 3.89 -948.85 -3.70 -10.71 16 3 C 0.03 0.22 9.48 127.69 1.21 1.43 16 4 C 0.06 0.73 4.25 86.31 0.37 1.10 16 5 C 0.18 3.44 0.82 3.61 0.00 3.44 16 6 C -0.16 -3.30 8.53 71.98 0.61 -2.68 16 7 C -0.15 -3.49 8.08 71.98 0.58 -2.91 16 8 N -0.70 -15.24 3.81 -425.75 -1.62 -16.86 16 9 C 0.56 17.94 7.18 86.79 0.62 18.56 16 10 O -0.57 -22.88 12.56 -3.89 -0.05 -22.93 16 11 C -0.16 -5.20 5.87 -20.11 -0.12 -5.31 16 12 C -0.07 -1.58 9.54 22.57 0.22 -1.37 16 13 C -0.12 -2.90 10.02 22.21 0.22 -2.67 16 14 C -0.06 -2.25 9.79 22.48 0.22 -2.03 16 15 C -0.13 -5.69 5.45 22.65 0.12 -5.57 16 16 S -0.10 -5.29 21.41 -56.49 -1.21 -6.50 16 17 C -0.54 -31.87 9.46 67.94 0.64 -31.22 16 18 H 0.07 3.93 7.79 -2.91 -0.02 3.90 16 19 C 0.02 1.14 5.49 84.84 0.47 1.60 16 20 N -0.91 -55.30 13.22 21.64 0.29 -55.01 16 21 Si 0.99 45.09 29.55 68.60 2.03 47.12 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.04 -1.95 9.34 22.70 0.21 -1.74 16 26 H 0.05 0.34 7.83 -2.39 -0.02 0.33 16 27 H 0.08 0.75 7.92 -2.38 -0.02 0.73 16 28 H 0.07 0.91 5.52 -2.38 -0.01 0.90 16 29 H 0.07 0.57 8.07 -2.39 -0.02 0.56 16 30 H 0.07 0.59 8.01 -2.39 -0.02 0.57 16 31 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.06 0.57 7.79 -2.39 -0.02 0.55 16 33 H 0.10 1.02 7.88 -2.39 -0.02 1.00 16 34 H 0.04 1.20 6.47 -2.39 -0.02 1.18 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.06 1.51 7.43 -2.39 -0.02 1.49 16 38 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.04 1.38 5.79 -2.39 -0.01 1.37 16 40 H 0.41 6.36 3.78 -92.71 -0.35 6.00 16 41 H 0.17 2.17 6.40 -2.91 -0.02 2.15 16 42 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 43 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.27 15.51 8.31 -92.72 -0.77 14.74 16 45 H 0.10 5.03 7.65 -2.91 -0.02 5.01 16 Total: -1.00 -77.30 372.78 2.83 -74.47 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.64 Total: 18.70 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 6.45 Total: -28.28 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -5.03 Total: -82.58 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.21 Total: -6.50 kcal Total: -77.30 2.83 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457214685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.798 kcal (2) G-P(sol) polarization free energy of solvation -77.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds