Wall clock time and date at job start Tue Mar 31 2020 14:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 C 1.50703 * 109.46549 * 240.00387 * 2 1 3 5 5 H 1.08001 * 119.99902 * 239.99980 * 4 2 1 6 6 C 1.37874 * 120.00489 * 60.00343 * 4 2 1 7 7 N 1.31519 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47153 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47028 * 119.99757 * 8 6 4 11 11 H 1.48500 * 109.47174 * 240.00054 * 8 6 4 12 12 C 1.52991 * 109.47074 * 120.00534 * 2 1 3 13 13 N 1.46498 * 109.47227 * 299.99432 * 12 2 1 14 14 C 1.34778 * 119.99989 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99899 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00108 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47046 * 180.02562 * 17 16 14 19 19 S 1.81394 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.76199 * 103.00056 * 180.02562 * 19 18 17 21 21 C 1.38975 * 120.07816 * 180.02562 * 20 19 18 22 22 C 1.38086 * 119.91892 * 179.97438 * 21 20 19 23 23 C 1.38310 * 120.07752 * 359.97438 * 22 21 20 24 24 C 1.38301 * 120.16067 * 0.02562 * 23 22 21 25 25 C 1.38081 * 120.08205 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46868 * 300.00137 * 1 2 3 27 27 H 1.09001 * 109.46865 * 59.99183 * 1 2 3 28 28 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47227 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47263 * 300.00577 * 3 2 1 31 31 H 1.09002 * 109.46708 * 59.99758 * 3 2 1 32 32 H 0.96995 * 119.99996 * 180.02562 * 7 6 4 33 33 H 1.09011 * 109.47222 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47750 * 59.99530 * 12 2 1 35 35 H 0.96995 * 119.99731 * 0.02562 * 13 12 2 36 36 H 0.97005 * 119.99945 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.46640 * 60.00225 * 17 16 14 38 38 H 1.08996 * 109.47280 * 300.00397 * 17 16 14 39 39 H 1.09000 * 109.46939 * 60.00137 * 18 17 16 40 40 H 1.09004 * 109.47160 * 299.99981 * 18 17 16 41 41 H 1.07995 * 120.04427 * 359.69664 * 21 20 19 42 42 H 1.08000 * 119.96089 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.91521 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.95950 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.04201 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8778 -0.4911 3.6694 15 8 2.5775 -1.4791 3.7809 16 7 1.4282 0.1440 4.7699 17 6 1.7822 -0.3566 6.1005 18 6 1.1480 0.5381 7.1674 19 16 1.5868 -0.0813 8.8148 20 6 0.7805 1.0551 9.8933 21 6 0.8879 0.9041 11.2706 22 6 0.2550 1.7969 12.1128 23 6 -0.4845 2.8407 11.5870 24 6 -0.5935 2.9940 10.2169 25 6 0.0365 2.1051 9.3686 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.7081 1.1611 -3.4843 33 1 3.1301 -0.7217 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.9939 0.7577 2.3564 36 1 0.8703 0.9325 4.6810 37 1 2.8660 -0.3476 6.2155 38 1 1.4131 -1.3758 6.2153 39 1 0.0641 0.5287 7.0520 40 1 1.5167 1.5575 7.0527 41 1 1.4618 0.0869 11.6819 42 1 0.3377 1.6799 13.1832 43 1 -0.9787 3.5372 12.2481 44 1 -1.1722 3.8100 9.8098 45 1 -0.0494 2.2253 8.2988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457500809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:32 Heat of formation + Delta-G solvation = -14.383179 kcal Electronic energy + Delta-G solvation = -23499.223080 eV Core-core repulsion = 20028.550567 eV Total energy + Delta-G solvation = -3470.672513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.64825 -39.30540 -36.64800 -35.18511 -33.29177 -31.75647 -31.37235 -31.08883 -30.02291 -25.72871 -25.63758 -24.97856 -23.70222 -23.08716 -22.39196 -20.73953 -18.79926 -18.44525 -17.90697 -16.74586 -16.11171 -15.93526 -15.80490 -15.43470 -14.98892 -14.69447 -14.64672 -14.35624 -13.90342 -13.70561 -13.47647 -13.39185 -12.95358 -12.86752 -12.37188 -12.17371 -12.06609 -11.87448 -11.55798 -11.37848 -11.20722 -10.87834 -10.65701 -10.60421 -10.38994 -10.21221 -10.17013 -9.83451 -9.63618 -9.41926 -9.31755 -9.08364 -8.78433 -8.42364 -8.22345 -7.78021 -6.02386 -4.12063 0.78529 0.93737 0.98148 1.97451 3.12943 3.27357 3.28965 3.36046 3.41392 3.59335 4.31703 4.38902 4.41362 4.46159 4.50038 4.67654 4.71862 4.93568 4.99095 5.09123 5.24608 5.30138 5.51944 5.54670 5.63463 5.82969 5.94841 6.07495 6.19722 6.36173 6.46550 6.47597 6.51498 6.78922 6.82011 6.89168 7.02778 7.07475 7.25300 7.39123 7.55542 7.70044 8.00915 8.12208 8.37240 8.43942 8.87901 8.99511 9.53758 10.99134 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034838 B = 0.001824 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.524648 B =15349.055914 C =15950.908480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.699 3.301 15 O -0.596 6.596 16 N -0.753 5.753 17 C 0.159 3.841 18 C -0.127 4.127 19 S -0.090 6.090 20 C -0.084 4.084 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.134 4.134 26 H 0.005 0.995 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.005 0.995 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.394 0.606 36 H 0.394 0.606 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 6.012 26.279 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.399 3.601 15 O -0.475 6.475 16 N -0.411 5.411 17 C 0.033 3.967 18 C -0.275 4.275 19 S 0.154 5.846 20 C -0.197 4.197 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.148 4.148 24 C -0.119 4.119 25 C -0.158 4.158 26 H 0.024 0.976 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.227 0.773 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.950 4.154 26.330 26.818 hybrid contribution -1.076 1.517 -1.182 2.204 sum -4.026 5.671 25.147 26.091 Atomic orbital electron populations 1.21818 0.97760 0.99175 0.99974 1.18382 0.92825 0.92810 0.90597 1.21816 0.98597 0.98337 0.99973 1.21024 1.31320 1.12054 0.89817 0.92325 1.24885 0.94895 0.94947 0.98878 1.69815 1.36782 1.22831 1.23094 0.86511 0.78631 0.79761 0.82958 1.19729 1.21084 1.21089 1.21601 0.97937 0.95441 0.82300 1.45503 1.55523 1.33040 1.04520 1.16016 0.80556 0.82973 0.80591 1.90899 1.42927 1.27666 1.86017 1.45031 1.57965 1.33637 1.04484 1.20623 1.00192 0.96718 0.79198 1.23871 1.05057 1.03708 0.94910 1.85631 1.64279 1.36827 0.97850 1.21826 1.01665 0.99075 0.97117 1.20780 1.00633 1.00092 0.91014 1.21115 0.96748 0.94543 0.99733 1.21213 0.99761 0.98531 0.95305 1.21095 0.98666 0.98619 0.93564 1.21222 0.99141 0.95368 1.00096 0.97589 0.89645 0.95431 0.95431 0.89650 0.97586 0.93093 0.92888 0.92893 0.77174 0.77256 0.90655 0.90661 0.88558 0.88562 0.85396 0.85468 0.85777 0.85625 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.05 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.50 -13.16 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.15 3.21 4.50 -4.05 -0.02 3.19 16 13 N -0.73 -12.96 4.96 -65.23 -0.32 -13.28 16 14 C 0.70 12.28 8.57 -86.91 -0.74 11.53 16 15 O -0.60 -12.98 16.34 5.29 0.09 -12.89 16 16 N -0.75 -9.34 5.56 -65.22 -0.36 -9.71 16 17 C 0.16 1.75 5.68 -4.04 -0.02 1.73 16 18 C -0.13 -1.02 4.45 37.16 0.17 -0.85 16 19 S -0.09 -0.82 21.92 -107.50 -2.36 -3.18 16 20 C -0.08 -0.74 6.11 -39.04 -0.24 -0.98 16 21 C -0.10 -0.81 9.79 -39.36 -0.39 -1.20 16 22 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 23 C -0.13 -0.82 10.04 -39.53 -0.40 -1.22 16 24 C -0.10 -0.70 10.04 -39.62 -0.40 -1.09 16 25 C -0.13 -1.07 9.36 -39.37 -0.37 -1.44 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 27 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.39 6.16 6.18 -40.82 -0.25 5.91 16 36 H 0.39 3.68 8.49 -40.82 -0.35 3.34 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.67 7.75 -51.92 -0.40 0.27 16 40 H 0.10 0.67 7.75 -51.92 -0.40 0.27 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.83 5.88 -52.49 -0.31 0.52 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -30.32 376.45 -11.26 -41.58 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.82 Total: 6.32 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.65 Total: -7.22 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.17 Total: -45.97 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.36 Total: -3.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.32 -11.26 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457500809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.199 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds