Wall clock time and date at job start Tue Mar 31 2020 14:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 C 1.50703 * 109.46549 * 240.00387 * 2 1 3 5 5 H 1.08001 * 119.99902 * 239.99980 * 4 2 1 6 6 C 1.37874 * 120.00489 * 60.00343 * 4 2 1 7 7 N 1.31519 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47153 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47028 * 119.99757 * 8 6 4 11 11 H 1.48500 * 109.47174 * 240.00054 * 8 6 4 12 12 C 1.52991 * 109.47074 * 120.00534 * 2 1 3 13 13 N 1.46498 * 109.47227 * 299.99432 * 12 2 1 14 14 C 1.34778 * 119.99989 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99899 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00108 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47046 * 180.02562 * 17 16 14 19 19 S 1.81394 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.76199 * 103.00056 * 180.02562 * 19 18 17 21 21 C 1.38975 * 120.07816 * 180.02562 * 20 19 18 22 22 C 1.38086 * 119.91892 * 179.97438 * 21 20 19 23 23 C 1.38310 * 120.07752 * 359.97438 * 22 21 20 24 24 C 1.38301 * 120.16067 * 0.02562 * 23 22 21 25 25 C 1.38081 * 120.08205 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46868 * 300.00137 * 1 2 3 27 27 H 1.09001 * 109.46865 * 59.99183 * 1 2 3 28 28 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47227 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47263 * 300.00577 * 3 2 1 31 31 H 1.09002 * 109.46708 * 59.99758 * 3 2 1 32 32 H 0.96995 * 119.99996 * 180.02562 * 7 6 4 33 33 H 1.09011 * 109.47222 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47750 * 59.99530 * 12 2 1 35 35 H 0.96995 * 119.99731 * 0.02562 * 13 12 2 36 36 H 0.97005 * 119.99945 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.46640 * 60.00225 * 17 16 14 38 38 H 1.08996 * 109.47280 * 300.00397 * 17 16 14 39 39 H 1.09000 * 109.46939 * 60.00137 * 18 17 16 40 40 H 1.09004 * 109.47160 * 299.99981 * 18 17 16 41 41 H 1.07995 * 120.04427 * 359.69664 * 21 20 19 42 42 H 1.08000 * 119.96089 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.91521 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.95950 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.04201 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8778 -0.4911 3.6694 15 8 2.5775 -1.4791 3.7809 16 7 1.4282 0.1440 4.7699 17 6 1.7822 -0.3566 6.1005 18 6 1.1480 0.5381 7.1674 19 16 1.5868 -0.0813 8.8148 20 6 0.7805 1.0551 9.8933 21 6 0.8879 0.9041 11.2706 22 6 0.2550 1.7969 12.1128 23 6 -0.4845 2.8407 11.5870 24 6 -0.5935 2.9940 10.2169 25 6 0.0365 2.1051 9.3686 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.7081 1.1611 -3.4843 33 1 3.1301 -0.7217 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.9939 0.7577 2.3564 36 1 0.8703 0.9325 4.6810 37 1 2.8660 -0.3476 6.2155 38 1 1.4131 -1.3758 6.2153 39 1 0.0641 0.5287 7.0520 40 1 1.5167 1.5575 7.0527 41 1 1.4618 0.0869 11.6819 42 1 0.3377 1.6799 13.1832 43 1 -0.9787 3.5372 12.2481 44 1 -1.1722 3.8100 9.8098 45 1 -0.0494 2.2253 8.2988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457500809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:31 Heat of formation + Delta-G solvation = -31.371327 kcal Electronic energy + Delta-G solvation = -23499.959742 eV Core-core repulsion = 20028.550567 eV Total energy + Delta-G solvation = -3471.409174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06660 -39.81168 -38.32202 -36.40486 -35.00283 -32.94712 -32.19175 -31.87718 -31.10516 -27.54217 -27.44045 -26.68195 -24.60415 -23.61533 -23.06650 -22.12206 -20.58385 -19.68789 -18.64892 -17.77943 -17.52854 -17.05093 -16.97860 -16.61285 -16.00216 -15.86623 -15.73944 -15.45155 -15.16900 -14.71927 -14.61687 -14.38953 -14.16239 -14.00882 -13.97675 -13.23968 -13.18774 -13.08824 -12.96552 -12.66152 -12.55979 -12.41092 -12.23326 -12.13111 -12.05249 -11.46863 -11.43945 -11.21874 -11.12786 -10.72636 -10.68318 -10.42189 -10.33981 -9.93882 -9.69834 -8.43516 -8.01509 -6.16589 0.24897 0.29568 0.41751 1.33246 1.41864 1.46235 1.55544 1.89680 2.17635 2.47245 2.77208 3.22243 3.44694 3.53959 3.79061 3.92543 4.01147 4.23898 4.30100 4.43261 4.51196 4.54714 4.57605 4.63833 4.71720 4.75524 4.80333 5.01742 5.06884 5.07992 5.12073 5.22102 5.30431 5.37379 5.40722 5.45916 5.57551 5.62996 5.69074 5.69200 5.98531 6.04034 6.17388 6.23665 6.45307 6.87782 7.14015 7.50995 7.60867 8.97581 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034838 B = 0.001824 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.524648 B =15349.055914 C =15950.908480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.119 4.119 4 C -0.526 4.526 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.168 3.832 13 N -0.724 5.724 14 C 0.698 3.302 15 O -0.641 6.641 16 N -0.730 5.730 17 C 0.160 3.840 18 C -0.110 4.110 19 S -0.122 6.122 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.146 4.146 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.407 0.593 36 H 0.414 0.586 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 7.632 27.745 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.049 3.951 3 C -0.177 4.177 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.397 3.603 15 O -0.523 6.523 16 N -0.388 5.388 17 C 0.035 3.965 18 C -0.258 4.258 19 S 0.122 5.878 20 C -0.212 4.212 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.150 4.150 24 C -0.127 4.127 25 C -0.170 4.170 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.244 0.756 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.138 5.831 27.834 28.738 hybrid contribution -0.739 1.041 -1.532 1.994 sum -4.877 6.872 26.302 27.619 Atomic orbital electron populations 1.21656 0.96985 0.98654 1.00407 1.18386 0.93377 0.93128 0.90201 1.21654 0.97892 0.97747 1.00405 1.21295 1.31549 1.12085 0.91544 0.93785 1.25441 0.95208 0.95633 1.00925 1.69910 1.37041 1.23299 1.23507 0.85715 0.78113 0.78729 0.80292 1.20078 1.20745 1.20756 1.21125 0.96715 0.94681 0.83175 1.45171 1.55737 1.33242 1.03759 1.16140 0.80199 0.82624 0.81303 1.90876 1.44936 1.29802 1.86689 1.44779 1.56961 1.33484 1.03601 1.20619 0.99791 0.96987 0.79137 1.23719 1.05705 1.03452 0.92941 1.85726 1.65101 1.37955 0.99048 1.21887 1.02554 0.99474 0.97238 1.20995 1.01216 1.00777 0.91123 1.21427 0.96192 0.94161 1.00791 1.21579 0.99213 0.98598 0.95650 1.21421 0.98532 0.98892 0.93858 1.21451 0.99187 0.95345 1.00973 0.94310 0.91925 0.96382 0.96382 0.91930 0.94309 0.93056 0.94655 0.94657 0.75639 0.74958 0.91828 0.91833 0.86972 0.86978 0.85160 0.83350 0.83467 0.83660 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 4 C -0.53 -27.79 8.01 25.60 0.21 -27.58 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.45 5.15 84.65 0.44 1.88 16 7 N -0.90 -47.54 9.35 21.45 0.20 -47.34 16 8 Si 0.94 42.62 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.16 4.50 86.38 0.39 7.55 16 13 N -0.72 -24.57 4.96 -478.54 -2.37 -26.94 16 14 C 0.70 23.75 8.57 179.05 1.53 25.28 16 15 O -0.64 -28.00 16.34 -3.99 -0.07 -28.06 16 16 N -0.73 -16.64 5.56 -478.53 -2.66 -19.30 16 17 C 0.16 3.36 5.68 86.38 0.49 3.85 16 18 C -0.11 -1.55 4.45 71.98 0.32 -1.23 16 19 S -0.12 -2.15 21.92 -56.49 -1.24 -3.39 16 20 C -0.10 -1.64 6.11 22.62 0.14 -1.51 16 21 C -0.12 -1.77 9.79 22.41 0.22 -1.55 16 22 C -0.11 -1.22 10.04 22.25 0.22 -1.00 16 23 C -0.13 -1.36 10.04 22.30 0.22 -1.13 16 24 C -0.11 -1.24 10.04 22.25 0.22 -1.01 16 25 C -0.15 -2.05 9.36 22.41 0.21 -1.84 16 26 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 27 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 31 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 32 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 33 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 11.57 6.18 -92.71 -0.57 10.99 16 36 H 0.41 6.37 8.49 -92.70 -0.79 5.58 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.26 7.75 -2.39 -0.02 1.25 16 40 H 0.11 1.26 7.75 -2.39 -0.02 1.25 16 41 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 44 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.14 1.47 5.88 -2.91 -0.02 1.45 16 Total: -1.00 -66.02 376.45 1.28 -64.74 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.36 Total: 20.91 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.75 Total: -5.27 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -4.83 Total: -93.58 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.07 Total: -28.06 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -1.24 Total: -3.39 kcal Total: -66.02 1.28 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457500809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.370 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds