Wall clock time and date at job start Tue Mar 31 2020 12:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28665 * 124.93283 * 2 1 4 4 C 1.32523 * 117.88102 * 180.02562 * 3 2 1 5 5 C 1.34612 * 113.15705 * 359.97438 * 4 3 2 6 6 S 1.70916 * 124.92695 * 180.02562 * 2 1 3 7 7 C 1.51000 * 125.22331 * 180.02562 * 5 4 3 8 8 C 1.53279 * 108.57972 * 16.07058 * 7 5 4 9 9 C 1.53140 * 108.99344 * 310.72338 * 8 7 5 10 10 C 1.52128 * 124.19933 * 179.97438 * 4 3 2 11 11 H 1.09002 * 109.72044 * 77.66918 * 10 4 3 12 12 C 1.50701 * 109.59662 * 317.29299 * 10 4 3 13 13 O 1.21279 * 120.00251 * 240.76152 * 12 10 4 14 14 N 1.34777 * 120.00115 * 60.75752 * 12 10 4 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47127 * 59.99627 * 16 15 14 18 18 C 1.52999 * 109.46991 * 300.00312 * 16 15 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 20 20 H 1.08002 * 119.99362 * 359.97438 * 19 16 15 21 21 C 1.37867 * 120.00258 * 180.02562 * 19 16 15 22 22 N 1.31511 * 120.00203 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00057 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46873 * 60.00018 * 23 21 19 25 25 H 1.48503 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47271 * 299.99819 * 23 21 19 27 27 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47317 * 299.98630 * 1 2 3 29 29 H 1.08998 * 109.47029 * 59.98902 * 1 2 3 30 30 H 1.08994 * 109.62005 * 256.33557 * 7 5 4 31 31 H 1.09003 * 109.61708 * 135.79318 * 7 5 4 32 32 H 1.09002 * 109.54628 * 190.87399 * 8 7 5 33 33 H 1.08997 * 109.55078 * 70.57996 * 8 7 5 34 34 H 1.08998 * 109.47907 * 310.38529 * 9 8 7 35 35 H 1.09009 * 109.47415 * 190.37812 * 9 8 7 36 36 H 0.97003 * 119.99640 * 0.02562 * 14 12 10 37 37 H 1.09002 * 109.47129 * 59.99747 * 15 14 12 38 38 H 1.09001 * 109.46596 * 300.00102 * 15 14 12 39 39 H 1.09001 * 109.46801 * 300.00272 * 17 16 15 40 40 H 1.09001 * 109.46998 * 59.99868 * 17 16 15 41 41 H 1.09000 * 109.47050 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.47160 * 179.97438 * 18 16 15 43 43 H 1.09002 * 109.46719 * 299.99711 * 18 16 15 44 44 H 1.08993 * 109.47839 * 59.99553 * 18 16 15 45 45 H 0.97006 * 120.00645 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0548 0.0000 4 6 3.5589 0.8921 -0.0005 5 6 3.9324 -0.4012 -0.0004 6 16 2.4855 -1.4013 -0.0006 7 6 5.3591 -0.8957 -0.0004 8 6 6.2778 0.2635 0.4017 9 6 5.9246 1.4940 -0.4388 10 6 4.5620 2.0359 -0.0012 11 1 4.6402 2.4571 1.0011 12 6 4.1105 3.1036 -0.9641 13 8 4.8097 3.4033 -1.9087 14 7 2.9297 3.7254 -0.7756 15 6 2.4905 4.7630 -1.7120 16 6 1.1283 5.3033 -1.2724 17 6 1.2452 5.8998 0.1317 18 6 0.1078 4.1634 -1.2588 19 6 0.6768 6.3710 -2.2352 20 1 1.2995 6.6378 -3.0764 21 6 -0.5305 7.0079 -2.0418 22 7 -1.2885 6.6834 -1.0173 23 14 -1.0898 8.3320 -3.2350 24 1 -1.2035 7.7539 -4.5980 25 1 -2.4121 8.8563 -2.8083 26 1 -0.0989 9.4378 -3.2473 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5136 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 5.6254 -1.2448 -0.9980 31 1 5.4638 -1.7109 0.7156 32 1 7.3162 -0.0150 0.2223 33 1 6.1369 0.4908 1.4584 34 1 5.8840 1.2154 -1.4918 35 1 6.6844 2.2624 -0.2952 36 1 2.3707 3.4859 -0.0199 37 1 2.4077 4.3381 -2.7124 38 1 3.2174 5.5752 -1.7213 39 1 1.5720 5.1278 0.8284 40 1 1.9723 6.7118 0.1221 41 1 0.2746 6.2843 0.4451 42 1 -0.8626 4.5483 -0.9452 43 1 0.0245 3.7385 -2.2591 44 1 0.4345 3.3915 -0.5622 45 1 -2.1382 7.1312 -0.8813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458012687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:46 Heat of formation + Delta-G solvation = -18.172437 kcal Electronic energy + Delta-G solvation = -25942.474721 eV Core-core repulsion = 22471.637894 eV Total energy + Delta-G solvation = -3470.836828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64068 -38.76973 -36.74521 -35.96470 -33.16049 -31.66992 -31.36268 -30.47926 -28.02155 -25.71687 -25.60572 -25.07103 -23.79950 -23.33641 -21.27274 -19.99488 -18.69027 -18.53345 -18.10378 -16.78395 -15.75132 -15.47697 -15.08570 -14.92021 -14.62270 -14.47186 -14.28953 -14.15789 -13.63216 -13.25155 -12.91152 -12.84809 -12.73153 -12.40715 -12.36431 -12.08195 -11.97173 -11.80827 -11.31358 -11.25734 -11.09278 -11.02252 -10.77434 -10.67711 -10.65464 -10.27932 -10.14135 -9.61735 -9.52232 -9.44328 -9.26197 -9.14547 -8.70371 -8.52441 -8.34896 -8.14050 -5.95283 -4.05109 0.65586 1.24994 1.63955 2.67574 3.17716 3.33486 3.37339 3.41200 3.87477 3.94096 4.45001 4.50802 4.65501 4.78664 4.87570 4.92129 5.19260 5.28901 5.31008 5.34384 5.40616 5.43684 5.49204 5.64733 5.78107 5.86411 5.89956 5.96782 6.14050 6.24327 6.36259 6.43599 6.63617 6.88680 6.98711 7.08410 7.14930 7.21647 7.46957 7.66297 7.74008 7.76057 8.10371 8.20584 8.30591 8.47144 8.86449 8.96023 9.59978 11.05803 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003750 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.206012 B = 7465.624871 C = 8598.488795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 N -0.463 5.463 4 C 0.079 3.921 5 C -0.222 4.222 6 S 0.101 5.899 7 C -0.040 4.040 8 C -0.115 4.115 9 C -0.100 4.100 10 C -0.030 4.030 11 H 0.109 0.891 12 C 0.514 3.486 13 O -0.557 6.557 14 N -0.699 5.699 15 C 0.132 3.868 16 C 0.058 3.942 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.505 4.505 20 H 0.055 0.945 21 C 0.067 3.933 22 N -0.886 5.886 23 Si 0.892 3.108 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.406 0.594 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.006 0.994 40 H 0.025 0.975 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.021 0.979 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -18.073 6.808 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.215 4.215 3 N -0.177 5.177 4 C -0.053 4.053 5 C -0.343 4.343 6 S 0.358 5.642 7 C -0.080 4.080 8 C -0.154 4.154 9 C -0.138 4.138 10 C -0.053 4.053 11 H 0.127 0.873 12 C 0.298 3.702 13 O -0.436 6.436 14 N -0.349 5.349 15 C 0.009 3.991 16 C 0.057 3.943 17 C -0.187 4.187 18 C -0.186 4.186 19 C -0.544 4.544 20 H 0.073 0.927 21 C -0.134 4.134 22 N -0.524 5.524 23 Si 0.720 3.280 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.243 0.757 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.044 0.956 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.040 0.960 44 H 0.035 0.965 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.306 -18.368 6.214 21.095 hybrid contribution -0.197 1.328 -0.321 1.381 sum 8.109 -17.040 5.893 19.770 Atomic orbital electron populations 1.20477 0.84906 1.03186 1.05256 1.26796 1.01594 0.90140 1.02998 1.65707 1.04326 1.31961 1.15689 1.20415 0.89303 0.92820 1.02732 1.25901 0.99940 0.95597 1.12862 1.83737 0.97575 1.13081 1.69793 1.20189 0.87099 0.98247 1.02435 1.21647 0.99006 0.94367 1.00384 1.21397 0.94110 0.97328 1.00977 1.20211 0.93019 0.91249 1.00869 0.87336 1.20048 0.82106 0.82240 0.85779 1.90651 1.55174 1.66061 1.31762 1.46266 1.19548 1.38424 1.30643 1.21684 0.97849 0.88134 0.91389 1.18321 0.88464 0.93568 0.93955 1.21813 1.02555 0.97611 0.96713 1.21778 1.02943 0.96127 0.97722 1.20968 1.03902 1.19213 1.10269 0.92660 1.24858 0.96416 0.96802 0.95346 1.69806 1.12092 1.42060 1.28469 0.86665 0.77727 0.82155 0.81474 1.20362 1.21365 1.20331 0.90521 0.89053 0.88852 0.90008 0.90362 0.90413 0.91272 0.90337 0.90103 0.75692 0.93130 0.92976 0.97519 0.95625 0.89678 0.89971 0.95968 0.96514 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.47 36.00 0.38 -0.43 16 2 C 0.06 0.82 7.38 -13.61 -0.10 0.72 16 3 N -0.46 -7.13 8.86 -7.33 -0.06 -7.19 16 4 C 0.08 1.13 6.21 -82.87 -0.51 0.61 16 5 C -0.22 -2.65 6.39 -35.44 -0.23 -2.88 16 6 S 0.10 1.08 23.16 -107.50 -2.49 -1.41 16 7 C -0.04 -0.36 6.28 -27.59 -0.17 -0.53 16 8 C -0.12 -0.98 5.95 -26.51 -0.16 -1.14 16 9 C -0.10 -1.19 4.59 -26.64 -0.12 -1.31 16 10 C -0.03 -0.42 2.89 -92.20 -0.27 -0.69 16 11 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.51 9.68 7.11 -10.98 -0.08 9.60 16 13 O -0.56 -12.16 15.84 5.56 0.09 -12.07 16 14 N -0.70 -13.81 4.53 -60.29 -0.27 -14.09 16 15 C 0.13 3.01 4.50 -4.04 -0.02 2.99 16 16 C 0.06 1.40 0.50 -155.66 -0.08 1.32 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 19 C -0.50 -13.63 8.01 -34.45 -0.28 -13.91 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 22 N -0.89 -24.00 9.35 55.43 0.52 -23.49 16 23 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.08 1.07 7.77 -51.93 -0.40 0.66 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.41 7.75 5.08 -40.82 -0.21 7.55 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 42 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.35 6.86 -51.93 -0.36 -0.01 16 45 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -30.49 364.76 -9.86 -40.35 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.99 Total: 5.69 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.13 Total: -9.39 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.18 Total: -44.77 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.49 -9.86 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458012687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.175 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds