Wall clock time and date at job start Tue Mar 31 2020 12:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28665 * 124.93283 * 2 1 4 4 C 1.32523 * 117.88102 * 180.02562 * 3 2 1 5 5 C 1.34612 * 113.15705 * 359.97438 * 4 3 2 6 6 S 1.70916 * 124.92695 * 180.02562 * 2 1 3 7 7 C 1.51000 * 125.22331 * 180.02562 * 5 4 3 8 8 C 1.53279 * 108.57972 * 16.07058 * 7 5 4 9 9 C 1.53140 * 108.99344 * 310.72338 * 8 7 5 10 10 C 1.52128 * 124.19933 * 179.97438 * 4 3 2 11 11 H 1.09002 * 109.72044 * 77.66918 * 10 4 3 12 12 C 1.50701 * 109.59662 * 317.29299 * 10 4 3 13 13 O 1.21279 * 120.00251 * 240.76152 * 12 10 4 14 14 N 1.34777 * 120.00115 * 60.75752 * 12 10 4 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47127 * 59.99627 * 16 15 14 18 18 C 1.52999 * 109.46991 * 300.00312 * 16 15 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 20 20 H 1.08002 * 119.99362 * 359.97438 * 19 16 15 21 21 C 1.37867 * 120.00258 * 180.02562 * 19 16 15 22 22 N 1.31511 * 120.00203 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00057 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46873 * 60.00018 * 23 21 19 25 25 H 1.48503 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47271 * 299.99819 * 23 21 19 27 27 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47317 * 299.98630 * 1 2 3 29 29 H 1.08998 * 109.47029 * 59.98902 * 1 2 3 30 30 H 1.08994 * 109.62005 * 256.33557 * 7 5 4 31 31 H 1.09003 * 109.61708 * 135.79318 * 7 5 4 32 32 H 1.09002 * 109.54628 * 190.87399 * 8 7 5 33 33 H 1.08997 * 109.55078 * 70.57996 * 8 7 5 34 34 H 1.08998 * 109.47907 * 310.38529 * 9 8 7 35 35 H 1.09009 * 109.47415 * 190.37812 * 9 8 7 36 36 H 0.97003 * 119.99640 * 0.02562 * 14 12 10 37 37 H 1.09002 * 109.47129 * 59.99747 * 15 14 12 38 38 H 1.09001 * 109.46596 * 300.00102 * 15 14 12 39 39 H 1.09001 * 109.46801 * 300.00272 * 17 16 15 40 40 H 1.09001 * 109.46998 * 59.99868 * 17 16 15 41 41 H 1.09000 * 109.47050 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.47160 * 179.97438 * 18 16 15 43 43 H 1.09002 * 109.46719 * 299.99711 * 18 16 15 44 44 H 1.08993 * 109.47839 * 59.99553 * 18 16 15 45 45 H 0.97006 * 120.00645 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0548 0.0000 4 6 3.5589 0.8921 -0.0005 5 6 3.9324 -0.4012 -0.0004 6 16 2.4855 -1.4013 -0.0006 7 6 5.3591 -0.8957 -0.0004 8 6 6.2778 0.2635 0.4017 9 6 5.9246 1.4940 -0.4388 10 6 4.5620 2.0359 -0.0012 11 1 4.6402 2.4571 1.0011 12 6 4.1105 3.1036 -0.9641 13 8 4.8097 3.4033 -1.9087 14 7 2.9297 3.7254 -0.7756 15 6 2.4905 4.7630 -1.7120 16 6 1.1283 5.3033 -1.2724 17 6 1.2452 5.8998 0.1317 18 6 0.1078 4.1634 -1.2588 19 6 0.6768 6.3710 -2.2352 20 1 1.2995 6.6378 -3.0764 21 6 -0.5305 7.0079 -2.0418 22 7 -1.2885 6.6834 -1.0173 23 14 -1.0898 8.3320 -3.2350 24 1 -1.2035 7.7539 -4.5980 25 1 -2.4121 8.8563 -2.8083 26 1 -0.0989 9.4378 -3.2473 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5136 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 5.6254 -1.2448 -0.9980 31 1 5.4638 -1.7109 0.7156 32 1 7.3162 -0.0150 0.2223 33 1 6.1369 0.4908 1.4584 34 1 5.8840 1.2154 -1.4918 35 1 6.6844 2.2624 -0.2952 36 1 2.3707 3.4859 -0.0199 37 1 2.4077 4.3381 -2.7124 38 1 3.2174 5.5752 -1.7213 39 1 1.5720 5.1278 0.8284 40 1 1.9723 6.7118 0.1221 41 1 0.2746 6.2843 0.4451 42 1 -0.8626 4.5483 -0.9452 43 1 0.0245 3.7385 -2.2591 44 1 0.4345 3.3915 -0.5622 45 1 -2.1382 7.1312 -0.8813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458012687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:45 Heat of formation + Delta-G solvation = -35.359931 kcal Electronic energy + Delta-G solvation = -25943.220027 eV Core-core repulsion = 22471.637894 eV Total energy + Delta-G solvation = -3471.582133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74562 -40.18154 -38.27148 -37.21656 -34.97035 -33.00865 -32.35135 -31.96340 -28.93249 -27.57347 -27.51159 -26.90254 -24.88520 -24.37250 -22.22650 -21.40142 -20.57431 -19.42963 -19.22843 -18.23631 -17.62762 -16.81175 -16.63791 -16.38983 -15.90494 -15.58079 -15.36450 -15.05056 -14.99217 -14.72824 -14.58562 -14.14146 -14.00095 -13.71797 -13.49473 -13.24410 -13.17025 -13.08896 -12.87855 -12.72821 -12.65397 -12.63426 -12.25582 -12.16916 -12.13424 -11.80484 -11.50386 -11.49163 -11.29350 -10.88130 -10.69383 -10.47571 -10.39209 -10.12595 -9.87708 -9.47989 -8.01783 -6.18203 -0.25695 0.38715 0.71430 1.43444 1.43818 1.51093 1.56363 1.81254 2.37369 2.52824 2.99646 3.21002 3.60498 3.76376 3.86378 4.00003 4.07281 4.27560 4.35484 4.39287 4.45857 4.48718 4.61297 4.67009 4.67443 4.70604 4.92538 4.94920 4.96464 5.06057 5.08019 5.11535 5.13816 5.15370 5.21883 5.28999 5.36817 5.40395 5.62870 5.65281 5.66464 6.12145 6.20295 6.42786 6.70955 6.80662 6.84991 7.33164 7.49013 8.97085 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003750 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.206012 B = 7465.624871 C = 8598.488795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 N -0.502 5.502 4 C 0.046 3.954 5 C -0.220 4.220 6 S 0.163 5.837 7 C -0.043 4.043 8 C -0.105 4.105 9 C -0.097 4.097 10 C -0.022 4.022 11 H 0.125 0.875 12 C 0.510 3.490 13 O -0.592 6.592 14 N -0.696 5.696 15 C 0.148 3.852 16 C 0.053 3.947 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.531 4.531 20 H 0.042 0.958 21 C 0.030 3.970 22 N -0.898 5.898 23 Si 0.946 3.054 24 H -0.278 1.278 25 H -0.280 1.280 26 H -0.277 1.277 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.410 0.590 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.009 0.991 44 H 0.035 0.965 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -20.241 7.939 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.241 4.241 3 N -0.217 5.217 4 C -0.085 4.085 5 C -0.341 4.341 6 S 0.420 5.580 7 C -0.082 4.082 8 C -0.144 4.144 9 C -0.136 4.136 10 C -0.046 4.046 11 H 0.142 0.858 12 C 0.297 3.703 13 O -0.474 6.474 14 N -0.346 5.346 15 C 0.024 3.976 16 C 0.053 3.947 17 C -0.174 4.174 18 C -0.167 4.167 19 C -0.570 4.570 20 H 0.060 0.940 21 C -0.170 4.170 22 N -0.536 5.536 23 Si 0.773 3.227 24 H -0.204 1.204 25 H -0.205 1.205 26 H -0.202 1.202 27 H 0.124 0.876 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.249 0.751 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.028 0.972 44 H 0.054 0.946 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.082 -20.557 7.367 23.651 hybrid contribution -0.433 1.923 -0.691 2.089 sum 8.649 -18.635 6.676 21.601 Atomic orbital electron populations 1.20554 0.83841 1.04899 1.04483 1.27161 1.02653 0.91046 1.03219 1.65674 1.05159 1.33809 1.17019 1.20399 0.89130 0.93599 1.05403 1.26400 1.02055 0.95279 1.10388 1.83457 0.95657 1.10717 1.68181 1.20397 0.85077 0.99029 1.03709 1.21634 1.00332 0.92355 1.00103 1.21412 0.92722 0.99042 1.00380 1.20217 0.94296 0.90012 1.00035 0.85759 1.20929 0.81010 0.82388 0.85998 1.90623 1.55994 1.67200 1.33557 1.46158 1.20291 1.37999 1.30199 1.21255 0.96877 0.88402 0.91069 1.18325 0.89167 0.93322 0.93908 1.21634 1.01199 0.97940 0.96664 1.21555 1.01692 0.96171 0.97328 1.21221 1.04418 1.20586 1.10762 0.93954 1.25447 0.96384 0.98420 0.96730 1.69907 1.12118 1.42462 1.29134 0.85806 0.77466 0.79870 0.79589 1.20369 1.20549 1.20216 0.87613 0.89001 0.90417 0.89248 0.87646 0.87800 0.90236 0.92490 0.89967 0.75142 0.95310 0.94373 0.95257 0.96239 0.91664 0.91888 0.97212 0.94576 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.47 71.24 0.75 -0.79 16 2 C 0.04 0.92 7.38 88.57 0.65 1.57 16 3 N -0.50 -15.15 8.86 -177.09 -1.57 -16.72 16 4 C 0.05 1.26 6.21 42.08 0.26 1.52 16 5 C -0.22 -4.71 6.39 24.95 0.16 -4.55 16 6 S 0.16 3.03 23.16 -56.49 -1.31 1.72 16 7 C -0.04 -0.60 6.28 30.04 0.19 -0.42 16 8 C -0.11 -1.45 5.95 30.73 0.18 -1.27 16 9 C -0.10 -2.18 4.59 30.65 0.14 -2.04 16 10 C -0.02 -0.61 2.89 -11.82 -0.03 -0.65 16 11 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 12 C 0.51 19.51 7.11 87.66 0.62 20.13 16 13 O -0.59 -26.59 15.84 -3.03 -0.05 -26.64 16 14 N -0.70 -28.04 4.53 -463.06 -2.10 -30.14 16 15 C 0.15 6.98 4.50 86.38 0.39 7.37 16 16 C 0.05 2.65 0.50 -52.93 -0.03 2.62 16 17 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 18 C -0.11 -5.26 8.08 71.98 0.58 -4.68 16 19 C -0.53 -29.40 8.01 25.60 0.21 -29.20 16 20 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 21 C 0.03 1.63 5.15 84.65 0.44 2.07 16 22 N -0.90 -49.03 9.35 21.44 0.20 -48.83 16 23 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 28 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 0.98 8.11 -2.39 -0.02 0.96 16 34 H 0.06 1.52 7.77 -2.39 -0.02 1.50 16 35 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.41 15.76 5.08 -92.71 -0.47 15.29 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 42 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.04 1.55 6.86 -2.39 -0.02 1.53 16 45 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 Total: -1.00 -67.22 364.76 2.81 -64.41 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.52 Total: 23.84 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 5.09 Total: -13.28 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -3.47 Total: -95.70 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.31 Total: 1.72 kcal Total: -67.22 2.81 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458012687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.048 kcal (2) G-P(sol) polarization free energy of solvation -67.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds