Wall clock time and date at job start Tue Mar 31 2020 14:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 C 1.50704 * 109.46915 * 239.99499 * 2 1 3 5 5 H 1.07994 * 119.99665 * 239.99910 * 4 2 1 6 6 C 1.37867 * 119.99814 * 60.00457 * 4 2 1 7 7 N 1.31517 * 120.00453 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00139 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46834 * 89.99919 * 8 6 4 10 10 H 1.48503 * 109.47084 * 210.00104 * 8 6 4 11 11 H 1.48496 * 109.46596 * 329.99901 * 8 6 4 12 12 C 1.53004 * 109.47086 * 119.99998 * 2 1 3 13 13 N 1.46508 * 109.46845 * 299.99710 * 12 2 1 14 14 C 1.34771 * 119.99761 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00306 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00035 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.47479 * 179.97438 * 16 14 13 18 18 C 1.34773 * 120.00061 * 179.97438 * 17 16 14 19 19 O 1.21568 * 120.00167 * 0.02562 * 18 17 16 20 20 C 1.47733 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.39646 * 120.11740 * 0.27389 * 20 18 17 22 22 C 1.37838 * 119.88070 * 180.23285 * 21 20 18 23 23 C 1.38658 * 120.11710 * 359.49180 * 22 21 20 24 24 F 1.35093 * 119.88405 * 180.27876 * 23 22 21 25 25 C 1.38657 * 120.23712 * 0.25791 * 23 22 21 26 26 C 1.37840 * 120.11828 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47367 * 300.00270 * 1 2 3 28 28 H 1.08996 * 109.47270 * 59.99840 * 1 2 3 29 29 H 1.09003 * 109.47841 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47593 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46909 * 300.00064 * 3 2 1 32 32 H 1.09002 * 109.47529 * 59.99835 * 3 2 1 33 33 H 0.97001 * 120.00903 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47444 * 180.02562 * 12 2 1 35 35 H 1.09001 * 109.47649 * 59.99714 * 12 2 1 36 36 H 0.96996 * 120.00053 * 0.02562 * 13 12 2 37 37 H 1.09001 * 109.47187 * 60.00285 * 16 14 13 38 38 H 1.09000 * 109.47096 * 300.00003 * 16 14 13 39 39 H 0.97006 * 119.99574 * 0.02562 * 17 16 14 40 40 H 1.08004 * 120.06390 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.94593 * 179.77526 * 22 21 20 42 42 H 1.08003 * 119.94100 * 180.02562 * 25 23 22 43 43 H 1.08004 * 120.05787 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3446 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7568 -3.7118 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4913 3.6695 15 8 2.5740 -1.4774 3.7809 16 6 1.3740 0.2188 4.9000 17 7 1.8614 -0.4724 6.0962 18 6 1.5357 -0.0119 7.3202 19 8 0.8371 0.9767 7.4318 20 6 2.0277 -0.7086 8.5265 21 6 2.8350 -1.8412 8.4013 22 6 3.2874 -2.4902 9.5300 23 6 2.9508 -2.0144 10.7881 24 9 3.4014 -2.6510 11.8912 25 6 2.1538 -0.8873 10.9182 26 6 1.6921 -0.2334 9.7960 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7081 1.1608 -3.4844 34 1 3.1299 -0.7209 1.2496 35 1 1.6766 -1.7489 1.2494 36 1 0.9937 0.7579 2.3564 37 1 0.2840 0.2188 4.8996 38 1 1.7374 1.2465 4.9003 39 1 2.4192 -1.2610 6.0072 40 1 3.1018 -2.2098 7.4218 41 1 3.9088 -3.3683 9.4343 42 1 1.8949 -0.5206 11.9005 43 1 1.0716 0.6447 9.8984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458036165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:36 Heat of formation + Delta-G solvation = -99.127067 kcal Electronic energy + Delta-G solvation = -25849.202240 eV Core-core repulsion = 21808.641780 eV Total energy + Delta-G solvation = -4040.560460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.39286 -40.59478 -39.48055 -38.32550 -36.55232 -34.68189 -33.46075 -31.72048 -31.38932 -30.94425 -28.14596 -25.79335 -25.59114 -24.82081 -23.79015 -23.29057 -20.82551 -20.49088 -19.02582 -18.70757 -17.91298 -17.01607 -16.54460 -16.11692 -15.96501 -15.91911 -15.79691 -15.39263 -14.84564 -14.77526 -14.62883 -14.17974 -13.86077 -13.60712 -13.40124 -13.16841 -13.06425 -12.89013 -12.68336 -12.30619 -12.27458 -11.51242 -11.45031 -11.25779 -10.92362 -10.75077 -10.45899 -10.33156 -10.26633 -9.84151 -9.71319 -9.66112 -9.46240 -9.37264 -9.15854 -8.85924 -8.60660 -8.41196 -6.07388 -4.17930 0.24676 0.73793 2.40764 2.70982 2.75182 3.24697 3.32092 3.34182 3.35251 3.61200 3.70417 4.20057 4.34764 4.35549 4.37705 4.72004 4.80581 4.89756 5.19457 5.23010 5.23601 5.35655 5.42075 5.58419 5.67285 5.79671 6.01372 6.13328 6.21797 6.30114 6.42150 6.63842 6.75539 6.82273 6.88026 6.94121 7.23174 7.27744 7.48964 7.63541 7.79726 7.93078 7.94648 8.06894 8.30205 8.42822 8.82452 9.48279 10.93953 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.001958 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.443828 B =14297.044257 C =14935.126904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.708 5.708 14 C 0.500 3.500 15 O -0.553 6.553 16 C 0.098 3.902 17 N -0.710 5.710 18 C 0.561 3.439 19 O -0.537 6.537 20 C -0.144 4.144 21 C -0.054 4.054 22 C -0.160 4.160 23 C 0.123 3.877 24 F -0.135 7.135 25 C -0.163 4.163 26 C -0.030 4.030 27 H 0.007 0.993 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.007 0.993 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.402 0.598 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.412 0.588 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -1.944 22.838 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.432 6.432 16 C -0.030 4.030 17 N -0.365 5.365 18 C 0.348 3.652 19 O -0.415 6.415 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.179 4.179 23 C 0.103 3.897 24 F -0.114 7.114 25 C -0.182 4.182 26 C -0.048 4.048 27 H 0.026 0.974 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.251 0.749 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.325 -1.851 22.810 22.923 hybrid contribution 0.418 -0.612 -0.821 1.106 sum 1.744 -2.462 21.989 22.195 Atomic orbital electron populations 1.21844 0.97665 0.99234 1.00215 1.18375 0.92874 0.92818 0.90488 1.21842 0.98625 0.98276 1.00214 1.20951 1.31630 1.12134 0.89822 0.92429 1.24884 0.94851 0.94906 0.98899 1.69795 1.36548 1.22671 1.23321 0.86563 0.79310 0.79386 0.82563 1.20698 1.21246 1.19913 1.21802 0.98297 0.95865 0.83126 1.46252 1.52040 1.31726 1.05772 1.20363 0.81096 0.84956 0.85157 1.90657 1.39076 1.26830 1.86655 1.21150 1.01155 0.97259 0.83405 1.45603 1.53752 1.32644 1.04466 1.18082 0.80248 0.83947 0.82878 1.90797 1.37981 1.25955 1.86783 1.19974 1.02651 0.98148 0.93929 1.21296 0.93821 0.93044 0.99129 1.21125 1.03568 1.02532 0.90664 1.18003 0.96269 0.92537 0.82859 1.91528 1.87152 1.80915 1.51762 1.21157 1.00426 0.95991 1.00603 1.21152 0.95534 0.98323 0.89839 0.97439 0.89508 0.95399 0.95387 0.89517 0.97427 0.92935 0.92438 0.92439 0.76248 0.88185 0.88180 0.74923 0.84110 0.83849 0.83898 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.84 8.08 37.15 0.30 -2.54 16 4 C -0.51 -12.81 8.01 -34.44 -0.28 -13.08 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.00 9.35 55.43 0.52 -22.48 16 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 C 0.13 2.59 4.50 -4.04 -0.02 2.57 16 13 N -0.71 -11.27 4.96 -60.29 -0.30 -11.56 16 14 C 0.50 7.48 7.90 -10.99 -0.09 7.39 16 15 O -0.55 -9.81 15.67 5.55 0.09 -9.72 16 16 C 0.10 1.15 6.15 -5.19 -0.03 1.12 16 17 N -0.71 -8.05 5.48 -62.47 -0.34 -8.39 16 18 C 0.56 6.61 7.77 -12.38 -0.10 6.51 16 19 O -0.54 -7.80 16.34 5.31 0.09 -7.71 16 20 C -0.14 -1.37 5.87 -104.97 -0.62 -1.98 16 21 C -0.05 -0.43 9.54 -39.20 -0.37 -0.80 16 22 C -0.16 -1.17 10.01 -39.57 -0.40 -1.57 16 23 C 0.12 0.98 7.31 -39.27 -0.29 0.69 16 24 F -0.14 -1.16 17.26 2.25 0.04 -1.12 16 25 C -0.16 -1.19 10.01 -39.57 -0.40 -1.58 16 26 C -0.03 -0.25 9.59 -39.20 -0.38 -0.63 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 28 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 32 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 33 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.40 5.75 6.16 -40.82 -0.25 5.50 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.41 4.39 5.47 -40.82 -0.22 4.17 16 40 H 0.14 0.93 6.40 -52.48 -0.34 0.59 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.15 1.17 7.65 -52.48 -0.40 0.77 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -29.11 360.95 -7.49 -36.60 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.48 Total: 7.41 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.52 Total: -3.70 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.12 Total: -42.43 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.11 -7.49 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458036165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.522 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds