Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 C 1.50704 * 109.46915 * 239.99499 * 2 1 3 5 5 H 1.07994 * 119.99665 * 239.99910 * 4 2 1 6 6 C 1.37867 * 119.99814 * 60.00457 * 4 2 1 7 7 N 1.31517 * 120.00453 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00139 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46834 * 89.99919 * 8 6 4 10 10 H 1.48503 * 109.47084 * 210.00104 * 8 6 4 11 11 H 1.48496 * 109.46596 * 329.99901 * 8 6 4 12 12 C 1.53004 * 109.47086 * 119.99998 * 2 1 3 13 13 N 1.46508 * 109.46845 * 299.99710 * 12 2 1 14 14 C 1.34771 * 119.99761 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00306 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00035 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.47479 * 179.97438 * 16 14 13 18 18 C 1.34773 * 120.00061 * 179.97438 * 17 16 14 19 19 O 1.21568 * 120.00167 * 0.02562 * 18 17 16 20 20 C 1.47733 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.39646 * 120.11740 * 0.27389 * 20 18 17 22 22 C 1.37838 * 119.88070 * 180.23285 * 21 20 18 23 23 C 1.38658 * 120.11710 * 359.49180 * 22 21 20 24 24 F 1.35093 * 119.88405 * 180.27876 * 23 22 21 25 25 C 1.38657 * 120.23712 * 0.25791 * 23 22 21 26 26 C 1.37840 * 120.11828 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47367 * 300.00270 * 1 2 3 28 28 H 1.08996 * 109.47270 * 59.99840 * 1 2 3 29 29 H 1.09003 * 109.47841 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47593 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46909 * 300.00064 * 3 2 1 32 32 H 1.09002 * 109.47529 * 59.99835 * 3 2 1 33 33 H 0.97001 * 120.00903 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47444 * 180.02562 * 12 2 1 35 35 H 1.09001 * 109.47649 * 59.99714 * 12 2 1 36 36 H 0.96996 * 120.00053 * 0.02562 * 13 12 2 37 37 H 1.09001 * 109.47187 * 60.00285 * 16 14 13 38 38 H 1.09000 * 109.47096 * 300.00003 * 16 14 13 39 39 H 0.97006 * 119.99574 * 0.02562 * 17 16 14 40 40 H 1.08004 * 120.06390 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.94593 * 179.77526 * 22 21 20 42 42 H 1.08003 * 119.94100 * 180.02562 * 25 23 22 43 43 H 1.08004 * 120.05787 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3446 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7568 -3.7118 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4913 3.6695 15 8 2.5740 -1.4774 3.7809 16 6 1.3740 0.2188 4.9000 17 7 1.8614 -0.4724 6.0962 18 6 1.5357 -0.0119 7.3202 19 8 0.8371 0.9767 7.4318 20 6 2.0277 -0.7086 8.5265 21 6 2.8350 -1.8412 8.4013 22 6 3.2874 -2.4902 9.5300 23 6 2.9508 -2.0144 10.7881 24 9 3.4014 -2.6510 11.8912 25 6 2.1538 -0.8873 10.9182 26 6 1.6921 -0.2334 9.7960 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7081 1.1608 -3.4844 34 1 3.1299 -0.7209 1.2496 35 1 1.6766 -1.7489 1.2494 36 1 0.9937 0.7579 2.3564 37 1 0.2840 0.2188 4.8996 38 1 1.7374 1.2465 4.9003 39 1 2.4192 -1.2610 6.0072 40 1 3.1018 -2.2098 7.4218 41 1 3.9088 -3.3683 9.4343 42 1 1.8949 -0.5206 11.9005 43 1 1.0716 0.6447 9.8984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458036165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = -116.723167 kcal Electronic energy + Delta-G solvation = -25849.965264 eV Core-core repulsion = 21808.641780 eV Total energy + Delta-G solvation = -4041.323484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.02466 -41.51308 -40.63096 -39.12840 -38.16123 -35.68377 -35.04009 -32.86456 -32.27341 -31.98671 -29.23119 -27.54115 -27.37048 -26.34093 -24.57636 -23.94134 -21.77677 -21.63866 -20.62425 -19.67765 -18.64579 -17.97210 -17.82601 -17.38050 -17.03733 -16.93933 -16.68853 -16.45637 -16.31441 -15.91848 -15.70271 -15.03796 -14.82372 -14.76309 -14.64476 -14.27078 -14.18922 -13.95398 -13.76707 -13.73615 -13.22172 -13.12332 -13.07667 -12.67050 -12.59479 -12.23688 -12.12955 -12.08702 -11.46787 -11.32572 -11.26293 -10.97313 -10.67877 -10.40337 -10.37087 -10.23525 -9.98247 -9.82382 -8.01241 -6.16788 -0.42575 0.16171 1.42999 1.46464 1.52591 1.53749 1.64130 1.74391 2.40378 2.52672 2.64668 3.09890 3.22619 3.54952 3.62609 3.73866 3.83080 4.15148 4.22156 4.31379 4.36213 4.43571 4.54280 4.72993 4.73722 4.86301 5.00052 5.00163 5.04840 5.08202 5.10634 5.15683 5.19477 5.21887 5.34943 5.56936 5.68997 5.69302 5.71083 6.17438 6.23537 6.35261 6.44591 6.55288 6.87940 7.01889 7.17497 7.51040 8.97325 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.001958 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.443828 B =14297.044257 C =14935.126904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.049 3.951 3 C -0.123 4.123 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.026 3.974 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.148 3.852 13 N -0.704 5.704 14 C 0.505 3.495 15 O -0.580 6.580 16 C 0.105 3.895 17 N -0.708 5.708 18 C 0.563 3.437 19 O -0.568 6.568 20 C -0.159 4.159 21 C -0.052 4.052 22 C -0.159 4.159 23 C 0.116 3.884 24 F -0.139 7.139 25 C -0.158 4.158 26 C -0.034 4.034 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.259 0.741 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.412 0.588 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.415 0.585 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -2.051 24.328 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 C -0.180 4.180 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.025 3.975 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.021 4.021 17 N -0.363 5.363 18 C 0.352 3.648 19 O -0.449 6.449 20 C -0.162 4.162 21 C -0.071 4.071 22 C -0.177 4.177 23 C 0.096 3.904 24 F -0.117 7.117 25 C -0.177 4.177 26 C -0.053 4.053 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.250 0.750 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.255 0.745 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.396 -1.956 24.309 24.428 hybrid contribution 0.419 -0.612 -1.225 1.432 sum 1.815 -2.569 23.084 23.298 Atomic orbital electron populations 1.21688 0.97127 0.98739 1.00485 1.18380 0.93260 0.93070 0.90450 1.21687 0.98001 0.97867 1.00482 1.21266 1.31571 1.12102 0.91480 0.93564 1.25455 0.95266 0.95612 1.01006 1.69908 1.37039 1.23286 1.23533 0.85784 0.78678 0.78449 0.80027 1.20602 1.21082 1.19996 1.21314 0.97295 0.95175 0.83755 1.46036 1.52388 1.31957 1.05120 1.20807 0.80123 0.84405 0.85499 1.90651 1.40216 1.28151 1.87054 1.21122 1.01899 0.97333 0.81794 1.45613 1.53661 1.32685 1.04326 1.18367 0.79573 0.83508 0.83333 1.90777 1.39538 1.27392 1.87189 1.19925 1.03945 0.99025 0.93352 1.21399 0.93300 0.92469 0.99923 1.21339 1.03310 1.02902 0.90178 1.18189 0.96423 0.92770 0.82986 1.91522 1.87221 1.81011 1.51993 1.21338 0.99642 0.95474 1.01211 1.21228 0.95700 0.98547 0.89830 0.94220 0.92093 0.96211 0.96194 0.92104 0.94208 0.93113 0.93813 0.93795 0.75048 0.86711 0.86704 0.74499 0.83011 0.81981 0.81859 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 2 C 0.05 2.14 0.50 -52.93 -0.03 2.12 16 3 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 4 C -0.53 -26.74 8.01 25.60 0.21 -26.54 16 5 H 0.05 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.35 5.15 84.65 0.44 1.79 16 7 N -0.90 -46.96 9.35 21.44 0.20 -46.76 16 8 Si 0.94 41.71 29.54 68.60 2.03 43.74 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.15 5.75 4.50 86.38 0.39 6.14 16 13 N -0.70 -21.14 4.96 -463.05 -2.30 -23.43 16 14 C 0.51 14.23 7.90 87.66 0.69 14.92 16 15 O -0.58 -19.89 15.67 -3.04 -0.05 -19.94 16 16 C 0.11 2.25 6.15 85.63 0.53 2.78 16 17 N -0.71 -14.89 5.48 -469.82 -2.57 -17.46 16 18 C 0.56 12.55 7.77 86.75 0.67 13.22 16 19 O -0.57 -15.89 16.34 -3.93 -0.06 -15.95 16 20 C -0.16 -2.82 5.87 -20.09 -0.12 -2.94 16 21 C -0.05 -0.74 9.54 22.52 0.21 -0.52 16 22 C -0.16 -2.01 10.01 22.28 0.22 -1.79 16 23 C 0.12 1.63 7.31 22.47 0.16 1.79 16 24 F -0.14 -2.14 17.26 44.97 0.78 -1.37 16 25 C -0.16 -2.02 10.01 22.28 0.22 -1.80 16 26 C -0.03 -0.53 9.59 22.52 0.22 -0.32 16 27 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 28 H 0.06 2.92 6.07 -2.39 -0.01 2.90 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 2.91 6.07 -2.38 -0.01 2.90 16 32 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 33 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 10.68 6.16 -92.71 -0.57 10.11 16 37 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.42 8.22 5.47 -92.70 -0.51 7.72 16 40 H 0.15 1.73 6.40 -2.91 -0.02 1.71 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.15 2.23 7.65 -2.91 -0.02 2.21 16 Total: -1.00 -61.97 360.95 2.99 -58.99 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.02 Total: 22.51 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 4.98 Total: -0.32 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -4.67 Total: -87.65 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.11 Total: -35.89 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.37 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -61.97 2.99 -58.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458036165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.737 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds