Wall clock time and date at job start Tue Mar 31 2020 14:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99441 * 2 1 3 5 5 H 1.07996 * 119.99746 * 124.92331 * 4 2 1 6 6 C 1.37878 * 119.99977 * 304.92542 * 4 2 1 7 7 N 1.31511 * 119.99880 * 351.62981 * 6 4 2 8 8 Si 1.86797 * 119.99811 * 171.62853 * 6 4 2 9 9 H 1.48499 * 109.47310 * 89.99776 * 8 6 4 10 10 H 1.48501 * 109.46954 * 329.99993 * 8 6 4 11 11 H 1.48494 * 109.47080 * 210.00170 * 8 6 4 12 12 C 1.52995 * 109.47216 * 240.00055 * 2 1 3 13 13 N 1.46497 * 109.47662 * 60.00171 * 12 2 1 14 14 C 1.34777 * 120.00337 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99621 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00201 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.83344 * 322.74168 * 17 16 14 19 19 C 1.54715 * 110.94272 * 86.45239 * 17 16 14 20 20 O 1.43764 * 102.79250 * 92.78907 * 19 17 16 21 21 C 1.36184 * 109.27804 * 27.55747 * 20 19 17 22 22 C 1.39275 * 129.83858 * 161.43200 * 21 20 19 23 23 C 1.37934 * 120.27285 * 179.55620 * 22 21 20 24 24 C 1.38471 * 120.32749 * 0.04676 * 23 22 21 25 25 F 1.35098 * 120.14787 * 180.19858 * 24 23 22 26 26 C 1.38536 * 119.71183 * 0.17221 * 24 23 22 27 27 C 1.37754 * 119.95984 * 359.97089 * 26 24 23 28 28 H 1.08997 * 109.47226 * 292.92487 * 1 2 3 29 29 H 1.09006 * 109.46703 * 52.91633 * 1 2 3 30 30 H 1.08999 * 109.47241 * 172.91746 * 1 2 3 31 31 H 1.09006 * 109.47275 * 187.35736 * 3 2 1 32 32 H 1.09004 * 109.47160 * 307.35769 * 3 2 1 33 33 H 1.09000 * 109.47467 * 67.35462 * 3 2 1 34 34 H 0.96993 * 120.00363 * 5.71570 * 7 6 4 35 35 H 1.09006 * 109.47168 * 180.02562 * 12 2 1 36 36 H 1.08996 * 109.46967 * 299.99654 * 12 2 1 37 37 H 0.97006 * 119.99336 * 359.97438 * 13 12 2 38 38 H 0.97007 * 120.00196 * 359.97438 * 16 14 13 39 39 H 1.08999 * 110.74711 * 211.11777 * 19 17 16 40 40 H 1.09007 * 110.74371 * 334.46723 * 19 17 16 41 41 H 1.07991 * 119.86221 * 359.58264 * 22 21 20 42 42 H 1.08005 * 119.83814 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.02233 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.7172 -1.5397 1.1335 6 6 1.6176 -0.3013 2.4803 7 7 0.9186 0.8049 2.6117 8 14 2.0487 -1.3183 3.9866 9 1 3.3475 -0.8577 4.5399 10 1 2.1532 -2.7494 3.6042 11 1 0.9880 -1.1565 5.0132 12 6 2.0400 -0.7212 -1.2492 13 7 1.5518 -0.0307 -2.4454 14 6 1.8770 -0.4915 -3.6695 15 8 2.5760 -1.4800 -3.7809 16 7 1.4274 0.1436 -4.7700 17 6 1.7813 -0.3569 -6.1005 18 1 2.8039 -0.7342 -6.1134 19 6 0.7846 -1.4452 -6.5651 20 8 -0.1900 -0.6897 -7.3040 21 6 0.3993 0.4269 -7.8144 22 6 -0.0152 1.2603 -8.8505 23 6 0.7403 2.3588 -9.2039 24 6 1.9178 2.6428 -8.5329 25 9 2.6529 3.7220 -8.8793 26 6 2.3385 1.8156 -7.5043 27 6 1.5855 0.7168 -7.1533 28 1 -0.3633 0.4003 0.9465 29 1 -0.3633 0.6197 -0.8199 30 1 -0.3633 -1.0198 -0.1267 31 1 3.1221 1.4454 -0.1316 32 1 1.5732 1.9930 -0.8169 33 1 1.7881 1.9170 0.9484 34 1 0.6239 1.2888 1.8244 35 1 3.1300 -0.7216 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 0.9938 0.7578 -2.3564 38 1 0.8694 0.9321 -4.6810 39 1 1.2793 -2.1721 -7.2094 40 1 0.3235 -1.9374 -5.7088 41 1 -0.9321 1.0456 -9.3791 42 1 0.4121 3.0006 -10.0082 43 1 3.2563 2.0321 -6.9778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458639655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:56 Heat of formation + Delta-G solvation = -71.869083 kcal Electronic energy + Delta-G solvation = -26874.505212 eV Core-core repulsion = 22835.126747 eV Total energy + Delta-G solvation = -4039.378465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.17387 -41.70636 -39.59972 -37.62121 -36.96107 -34.82869 -33.63155 -31.81609 -30.53139 -29.88353 -28.96865 -26.08284 -25.96854 -24.56664 -23.88425 -22.69189 -22.04627 -20.75213 -18.95759 -18.70772 -17.93417 -17.65357 -17.38075 -16.64360 -16.56104 -15.87319 -15.60492 -15.11112 -14.99087 -14.62154 -14.22395 -14.20021 -13.76181 -13.64754 -13.34118 -13.11270 -12.88289 -12.74943 -12.69416 -12.61318 -12.26058 -11.57914 -11.41386 -11.29469 -11.16257 -10.96310 -10.66186 -10.62717 -10.15051 -10.07396 -9.92321 -9.61411 -9.54776 -9.26671 -8.59790 -8.50643 -8.43246 -8.22447 -6.29206 -4.13460 0.57256 0.74165 2.71969 2.81541 3.22780 3.36156 3.41585 3.45380 3.60717 3.65569 4.05855 4.21149 4.34876 4.46534 4.56713 4.59621 4.80480 4.92070 4.99789 5.24196 5.29567 5.35066 5.43646 5.63619 5.67351 5.82826 5.93212 6.13306 6.14874 6.21916 6.32729 6.53105 6.55087 6.63883 6.68612 6.76620 6.85599 7.03678 7.04379 7.15989 7.47018 7.62812 8.14984 8.25188 8.37727 8.79676 8.82321 9.56999 10.97035 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002484 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.706375 B =11267.262999 C =11737.268534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 C -0.144 4.144 4 C -0.587 4.587 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.917 5.917 8 Si 1.067 2.933 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.285 1.285 12 C 0.158 3.842 13 N -0.732 5.732 14 C 0.700 3.300 15 O -0.595 6.595 16 N -0.742 5.742 17 C 0.184 3.816 18 H 0.117 0.883 19 C 0.039 3.961 20 O -0.297 6.297 21 C 0.115 3.885 22 C -0.116 4.116 23 C -0.106 4.106 24 C 0.063 3.937 25 F -0.137 7.137 26 C -0.082 4.082 27 C -0.167 4.167 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.281 0.719 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 2.685 -23.191 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 C -0.202 4.202 4 C -0.625 4.625 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.557 5.557 8 Si 0.896 3.104 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.210 1.210 12 C 0.035 3.965 13 N -0.386 5.386 14 C 0.400 3.600 15 O -0.474 6.474 16 N -0.398 5.398 17 C 0.078 3.922 18 H 0.135 0.865 19 C -0.037 4.037 20 O -0.210 6.210 21 C 0.069 3.931 22 C -0.135 4.135 23 C -0.125 4.125 24 C 0.043 3.957 25 F -0.116 7.116 26 C -0.101 4.101 27 C -0.169 4.169 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.228 0.772 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.670 1.665 -21.593 21.722 hybrid contribution -0.100 0.976 -1.588 1.867 sum -1.771 2.641 -23.181 23.398 Atomic orbital electron populations 1.22037 0.98242 0.99403 1.00640 1.18534 0.92312 0.92698 0.92384 1.22083 0.99293 0.98396 1.00391 1.21759 1.30727 1.18667 0.91354 0.92890 1.25670 0.94863 0.96346 1.00880 1.70844 1.36252 1.13991 1.34647 0.83576 0.76385 0.75181 0.75305 1.21521 1.21418 1.21046 1.21503 0.98001 0.95377 0.81602 1.45523 1.55459 1.33006 1.04569 1.16040 0.80367 0.83016 0.80590 1.90901 1.42976 1.27561 1.85981 1.45140 1.57349 1.33695 1.03642 1.20649 1.00967 0.90418 0.80195 0.86516 1.24444 0.89140 0.93747 0.96358 1.86901 1.35424 1.32609 1.66060 1.19652 0.91469 0.88818 0.93177 1.20084 1.02114 0.94964 0.96332 1.20907 0.93429 0.97680 1.00484 1.17364 0.92490 0.87181 0.98644 1.91515 1.76292 1.52315 1.91451 1.20296 1.00594 0.92984 0.96225 1.20554 0.97822 0.99003 0.99499 0.90894 0.96560 0.94381 0.94486 0.96706 0.91086 0.90288 0.92682 0.92575 0.77194 0.76828 0.88983 0.86559 0.84122 0.83694 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.85 37.16 0.29 -2.87 16 2 C 0.04 0.95 0.50 -155.66 -0.08 0.87 16 3 C -0.14 -3.14 7.91 37.16 0.29 -2.84 16 4 C -0.59 -15.46 8.00 -34.44 -0.28 -15.74 16 5 H 0.05 1.42 7.76 -52.49 -0.41 1.01 16 6 C 0.03 0.71 5.07 -17.82 -0.09 0.62 16 7 N -0.92 -25.64 12.17 55.43 0.67 -24.96 16 8 Si 1.07 24.31 29.91 -169.99 -5.08 19.23 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.16 3.29 4.50 -4.05 -0.02 3.27 16 13 N -0.73 -12.46 5.04 -65.23 -0.33 -12.79 16 14 C 0.70 11.54 8.56 -86.92 -0.74 10.80 16 15 O -0.60 -11.88 16.08 5.29 0.09 -11.79 16 16 N -0.74 -9.14 5.19 -58.47 -0.30 -9.45 16 17 C 0.18 2.01 3.40 -67.72 -0.23 1.78 16 18 H 0.12 1.34 7.72 -51.93 -0.40 0.94 16 19 C 0.04 0.40 7.73 38.06 0.29 0.69 16 20 O -0.30 -3.18 11.10 -20.33 -0.23 -3.41 16 21 C 0.12 1.12 7.04 -38.97 -0.27 0.85 16 22 C -0.12 -0.90 10.06 -39.31 -0.40 -1.30 16 23 C -0.11 -0.78 10.00 -39.61 -0.40 -1.17 16 24 C 0.06 0.56 7.31 -39.39 -0.29 0.27 16 25 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 26 C -0.08 -0.75 10.02 -39.65 -0.40 -1.15 16 27 C -0.17 -1.63 5.79 -104.10 -0.60 -2.23 16 28 H 0.07 1.76 5.16 -51.93 -0.27 1.50 16 29 H 0.02 0.29 7.04 -51.93 -0.37 -0.07 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16 33 H 0.07 1.72 5.30 -51.93 -0.28 1.45 16 34 H 0.28 7.57 3.59 -40.82 -0.15 7.43 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.39 6.01 6.30 -40.82 -0.26 5.75 16 38 H 0.40 4.24 8.62 -40.82 -0.35 3.89 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.12 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 43 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -30.38 353.36 -8.17 -38.54 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.44 Total: 8.79 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.91 Total: -8.17 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.04 Total: -47.20 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.14 Total: -15.20 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.38 -8.17 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458639655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.324 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds