Wall clock time and date at job start Tue Mar 31 2020 14:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99441 * 2 1 3 5 5 H 1.07996 * 119.99746 * 124.92331 * 4 2 1 6 6 C 1.37878 * 119.99977 * 304.92542 * 4 2 1 7 7 N 1.31511 * 119.99880 * 351.62981 * 6 4 2 8 8 Si 1.86797 * 119.99811 * 171.62853 * 6 4 2 9 9 H 1.48499 * 109.47310 * 89.99776 * 8 6 4 10 10 H 1.48501 * 109.46954 * 329.99993 * 8 6 4 11 11 H 1.48494 * 109.47080 * 210.00170 * 8 6 4 12 12 C 1.52995 * 109.47216 * 240.00055 * 2 1 3 13 13 N 1.46497 * 109.47662 * 60.00171 * 12 2 1 14 14 C 1.34777 * 120.00337 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99621 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00201 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.83344 * 322.74168 * 17 16 14 19 19 C 1.54715 * 110.94272 * 86.45239 * 17 16 14 20 20 O 1.43764 * 102.79250 * 92.78907 * 19 17 16 21 21 C 1.36184 * 109.27804 * 27.55747 * 20 19 17 22 22 C 1.39275 * 129.83858 * 161.43200 * 21 20 19 23 23 C 1.37934 * 120.27285 * 179.55620 * 22 21 20 24 24 C 1.38471 * 120.32749 * 0.04676 * 23 22 21 25 25 F 1.35098 * 120.14787 * 180.19858 * 24 23 22 26 26 C 1.38536 * 119.71183 * 0.17221 * 24 23 22 27 27 C 1.37754 * 119.95984 * 359.97089 * 26 24 23 28 28 H 1.08997 * 109.47226 * 292.92487 * 1 2 3 29 29 H 1.09006 * 109.46703 * 52.91633 * 1 2 3 30 30 H 1.08999 * 109.47241 * 172.91746 * 1 2 3 31 31 H 1.09006 * 109.47275 * 187.35736 * 3 2 1 32 32 H 1.09004 * 109.47160 * 307.35769 * 3 2 1 33 33 H 1.09000 * 109.47467 * 67.35462 * 3 2 1 34 34 H 0.96993 * 120.00363 * 5.71570 * 7 6 4 35 35 H 1.09006 * 109.47168 * 180.02562 * 12 2 1 36 36 H 1.08996 * 109.46967 * 299.99654 * 12 2 1 37 37 H 0.97006 * 119.99336 * 359.97438 * 13 12 2 38 38 H 0.97007 * 120.00196 * 359.97438 * 16 14 13 39 39 H 1.08999 * 110.74711 * 211.11777 * 19 17 16 40 40 H 1.09007 * 110.74371 * 334.46723 * 19 17 16 41 41 H 1.07991 * 119.86221 * 359.58264 * 22 21 20 42 42 H 1.08005 * 119.83814 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.02233 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.7172 -1.5397 1.1335 6 6 1.6176 -0.3013 2.4803 7 7 0.9186 0.8049 2.6117 8 14 2.0487 -1.3183 3.9866 9 1 3.3475 -0.8577 4.5399 10 1 2.1532 -2.7494 3.6042 11 1 0.9880 -1.1565 5.0132 12 6 2.0400 -0.7212 -1.2492 13 7 1.5518 -0.0307 -2.4454 14 6 1.8770 -0.4915 -3.6695 15 8 2.5760 -1.4800 -3.7809 16 7 1.4274 0.1436 -4.7700 17 6 1.7813 -0.3569 -6.1005 18 1 2.8039 -0.7342 -6.1134 19 6 0.7846 -1.4452 -6.5651 20 8 -0.1900 -0.6897 -7.3040 21 6 0.3993 0.4269 -7.8144 22 6 -0.0152 1.2603 -8.8505 23 6 0.7403 2.3588 -9.2039 24 6 1.9178 2.6428 -8.5329 25 9 2.6529 3.7220 -8.8793 26 6 2.3385 1.8156 -7.5043 27 6 1.5855 0.7168 -7.1533 28 1 -0.3633 0.4003 0.9465 29 1 -0.3633 0.6197 -0.8199 30 1 -0.3633 -1.0198 -0.1267 31 1 3.1221 1.4454 -0.1316 32 1 1.5732 1.9930 -0.8169 33 1 1.7881 1.9170 0.9484 34 1 0.6239 1.2888 1.8244 35 1 3.1300 -0.7216 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 0.9938 0.7578 -2.3564 38 1 0.8694 0.9321 -4.6810 39 1 1.2793 -2.1721 -7.2094 40 1 0.3235 -1.9374 -5.7088 41 1 -0.9321 1.0456 -9.3791 42 1 0.4121 3.0006 -10.0082 43 1 3.2563 2.0321 -6.9778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458639655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:54 Heat of formation + Delta-G solvation = -90.642874 kcal Electronic energy + Delta-G solvation = -26875.319304 eV Core-core repulsion = 22835.126747 eV Total energy + Delta-G solvation = -4040.192558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.88900 -42.51029 -40.92944 -38.71953 -38.28332 -35.92505 -35.27531 -32.90767 -32.02933 -30.61564 -29.87002 -27.86743 -27.75978 -26.25549 -24.75007 -23.44872 -22.92491 -22.01338 -20.76163 -20.02667 -18.83570 -18.58075 -18.25016 -18.09364 -17.47998 -16.85717 -16.60213 -16.34683 -15.86861 -15.70390 -15.61460 -15.56170 -15.07109 -14.86618 -14.48704 -14.42175 -14.24908 -13.91753 -13.68539 -13.49453 -13.36444 -13.22226 -13.15567 -12.73796 -12.54179 -12.42001 -12.13144 -11.92105 -11.87692 -11.71288 -11.50258 -11.36207 -10.55585 -10.49942 -10.27187 -10.21589 -9.84571 -9.22343 -8.38150 -6.23641 -0.10443 0.06429 1.56268 1.62850 1.63577 1.81447 2.00609 2.12516 2.45711 2.60741 2.91042 3.21467 3.25437 3.37047 3.49873 3.66273 3.99728 4.07958 4.15844 4.18443 4.31232 4.35855 4.47450 4.49590 4.55431 4.75428 4.82562 4.83127 4.87431 4.98779 4.99233 5.05423 5.15741 5.16635 5.21024 5.27324 5.44441 5.45976 5.64960 5.83131 5.87670 5.99320 6.17850 6.33453 6.75173 7.00075 7.47841 7.52738 8.89924 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002484 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.706375 B =11267.262999 C =11737.268534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 C -0.134 4.134 4 C -0.604 4.604 5 H 0.038 0.962 6 C -0.015 4.015 7 N -0.939 5.939 8 Si 1.104 2.896 9 H -0.280 1.280 10 H -0.278 1.278 11 H -0.284 1.284 12 C 0.177 3.823 13 N -0.726 5.726 14 C 0.702 3.298 15 O -0.631 6.631 16 N -0.724 5.724 17 C 0.180 3.820 18 H 0.109 0.891 19 C 0.042 3.958 20 O -0.306 6.306 21 C 0.103 3.897 22 C -0.110 4.110 23 C -0.094 4.094 24 C 0.052 3.948 25 F -0.144 7.144 26 C -0.087 4.087 27 C -0.172 4.172 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.280 0.720 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.405 0.595 38 H 0.409 0.591 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 3.417 -25.170 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 C -0.192 4.192 4 C -0.642 4.642 5 H 0.057 0.943 6 C -0.214 4.214 7 N -0.580 5.580 8 Si 0.929 3.071 9 H -0.206 1.206 10 H -0.204 1.204 11 H -0.210 1.210 12 C 0.052 3.948 13 N -0.381 5.381 14 C 0.402 3.598 15 O -0.512 6.512 16 N -0.380 5.380 17 C 0.075 3.925 18 H 0.127 0.873 19 C -0.034 4.034 20 O -0.220 6.220 21 C 0.057 3.943 22 C -0.129 4.129 23 C -0.112 4.112 24 C 0.033 3.967 25 F -0.123 7.123 26 C -0.107 4.107 27 C -0.174 4.174 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.241 0.759 38 H 0.245 0.755 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.182 0.818 42 H 0.191 0.809 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.547 2.438 -23.621 23.883 hybrid contribution 0.165 0.790 -1.100 1.364 sum -2.382 3.228 -24.722 25.045 Atomic orbital electron populations 1.21890 0.97294 0.99556 1.00617 1.18527 0.92991 0.93054 0.91899 1.21926 0.99062 0.97845 1.00346 1.22093 1.30471 1.18516 0.93144 0.94316 1.26729 0.94619 0.96651 1.03448 1.70898 1.37379 1.14819 1.34913 0.83071 0.76486 0.74618 0.72952 1.20566 1.20370 1.21001 1.20994 0.96734 0.94612 0.82411 1.45196 1.55766 1.33205 1.03900 1.16076 0.79979 0.82676 0.81034 1.90880 1.44584 1.29252 1.86513 1.44982 1.56446 1.33390 1.03194 1.20744 1.00842 0.91396 0.79547 0.87347 1.24411 0.88785 0.93704 0.96472 1.86881 1.35719 1.33083 1.66275 1.19897 0.91547 0.88907 0.93955 1.20393 1.02754 0.94221 0.95507 1.21217 0.92245 0.97432 1.00338 1.17547 0.93138 0.87065 0.98961 1.91501 1.76604 1.52647 1.91511 1.20353 1.00722 0.93009 0.96574 1.20370 0.98382 0.99131 0.99498 0.93285 0.93207 0.94956 0.95171 0.93327 0.93509 0.90449 0.94464 0.94226 0.75887 0.75537 0.87132 0.87608 0.81781 0.80890 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 7.85 71.98 0.57 -5.24 16 2 C 0.04 1.64 0.50 -52.93 -0.03 1.61 16 3 C -0.13 -5.76 7.91 71.98 0.57 -5.19 16 4 C -0.60 -32.23 8.00 25.60 0.20 -32.02 16 5 H 0.04 2.12 7.76 -2.91 -0.02 2.10 16 6 C -0.01 -0.79 5.07 84.66 0.43 -0.36 16 7 N -0.94 -52.84 12.17 21.45 0.26 -52.58 16 8 Si 1.10 49.17 29.91 68.60 2.05 51.22 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.18 7.37 4.50 86.38 0.39 7.76 16 13 N -0.73 -23.94 5.04 -478.55 -2.41 -26.36 16 14 C 0.70 22.66 8.56 179.06 1.53 24.19 16 15 O -0.63 -25.21 16.08 -3.97 -0.06 -25.27 16 16 N -0.72 -16.96 5.19 -457.16 -2.37 -19.33 16 17 C 0.18 3.76 3.40 45.13 0.15 3.91 16 18 H 0.11 2.46 7.72 -2.39 -0.02 2.44 16 19 C 0.04 0.81 7.73 72.57 0.56 1.37 16 20 O -0.31 -6.03 11.10 -95.65 -1.06 -7.09 16 21 C 0.10 1.78 7.04 22.67 0.16 1.94 16 22 C -0.11 -1.37 10.06 22.45 0.23 -1.14 16 23 C -0.09 -1.08 10.00 22.25 0.22 -0.85 16 24 C 0.05 0.83 7.31 22.40 0.16 0.99 16 25 F -0.14 -2.59 17.27 44.97 0.78 -1.82 16 26 C -0.09 -1.49 10.02 22.23 0.22 -1.26 16 27 C -0.17 -3.10 5.79 -19.53 -0.11 -3.21 16 28 H 0.05 2.36 5.16 -2.39 -0.01 2.34 16 29 H 0.05 1.75 7.04 -2.38 -0.02 1.73 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.05 1.71 7.05 -2.38 -0.02 1.70 16 33 H 0.05 2.26 5.30 -2.39 -0.01 2.24 16 34 H 0.28 15.21 3.59 -92.71 -0.33 14.88 16 35 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.40 11.46 6.30 -92.70 -0.58 10.87 16 38 H 0.41 7.92 8.62 -92.70 -0.80 7.13 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.11 2.26 8.10 -2.38 -0.02 2.24 16 41 H 0.16 1.26 8.06 -2.92 -0.02 1.23 16 42 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 43 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -65.66 353.36 2.56 -63.11 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.12 Total: 25.62 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.26 Total: -7.51 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -4.52 Total: -98.26 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.13 Total: -32.37 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -65.66 2.56 -63.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458639655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.536 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds