Wall clock time and date at job start Tue Mar 31 2020 14:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46566 * 120.00030 * 2 1 3 5 5 H 1.07997 * 119.99748 * 122.50324 * 4 2 1 6 6 C 1.37871 * 120.00192 * 302.22823 * 4 2 1 7 7 N 1.31517 * 120.00150 * 353.49029 * 6 4 2 8 8 Si 1.86800 * 120.00100 * 173.49569 * 6 4 2 9 9 H 1.48501 * 109.47425 * 94.98534 * 8 6 4 10 10 H 1.48506 * 109.46958 * 214.98758 * 8 6 4 11 11 H 1.48500 * 109.47040 * 334.98144 * 8 6 4 12 12 C 1.52996 * 109.47093 * 239.99780 * 2 1 3 13 13 N 1.46501 * 109.47120 * 60.00456 * 12 2 1 14 14 C 1.34781 * 120.00113 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99622 * 0.02562 * 14 13 12 16 16 N 1.34768 * 119.99906 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99970 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.57958 * 324.72917 * 17 16 14 19 19 C 1.52972 * 109.58232 * 204.31393 * 17 16 14 20 20 C 1.53079 * 109.33629 * 189.05424 * 19 17 16 21 21 C 1.53169 * 108.99386 * 70.51200 * 20 19 17 22 22 C 1.51416 * 108.70040 * 310.36924 * 21 20 19 23 23 S 1.75833 * 125.24210 * 196.27755 * 22 21 20 24 24 C 1.75726 * 91.07530 * 180.02562 * 23 22 21 25 25 C 1.32908 * 109.58945 * 0.02562 * 24 23 22 26 26 C 1.34627 * 124.78485 * 16.31668 * 22 21 20 27 27 H 1.08996 * 109.46989 * 300.00417 * 1 2 3 28 28 H 1.09004 * 109.46815 * 60.00065 * 1 2 3 29 29 H 1.08996 * 109.47474 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46973 * 174.12099 * 3 2 1 31 31 H 1.08998 * 109.47427 * 294.12348 * 3 2 1 32 32 H 1.09006 * 109.47163 * 54.12680 * 3 2 1 33 33 H 0.97001 * 120.00578 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46808 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47484 * 300.00126 * 12 2 1 36 36 H 0.96995 * 119.99786 * 359.97438 * 13 12 2 37 37 H 0.97004 * 120.00238 * 0.02562 * 16 14 13 38 38 H 1.08993 * 109.50488 * 308.97333 * 19 17 16 39 39 H 1.09005 * 109.49872 * 69.08328 * 19 17 16 40 40 H 1.08997 * 109.51481 * 310.67736 * 20 19 17 41 41 H 1.08995 * 109.56897 * 190.38031 * 20 19 17 42 42 H 1.08998 * 109.59860 * 190.60532 * 21 20 19 43 43 H 1.08998 * 109.72751 * 70.21362 * 21 20 19 44 44 H 1.08006 * 125.20524 * 180.02562 * 24 23 22 45 45 H 1.07989 * 122.15231 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6860 -1.5644 1.1320 6 6 1.6616 -0.2668 2.4822 7 7 0.9768 0.8488 2.6084 8 14 2.1324 -1.2503 3.9990 9 1 3.3923 -0.7088 4.5688 10 1 1.0488 -1.1505 5.0096 11 1 2.3301 -2.6736 3.6243 12 6 2.0400 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8778 -0.4908 -3.6695 15 8 2.5768 -1.4795 -3.7810 16 7 1.4282 0.1442 -4.7699 17 6 1.7821 -0.3563 -6.1005 18 1 2.7944 -0.7602 -6.0816 19 6 1.7013 0.7850 -7.1159 20 6 1.8488 0.2170 -8.5297 21 6 0.5869 -0.5761 -8.8826 22 6 0.2827 -1.5336 -7.7497 23 16 -0.7999 -2.9153 -7.8521 24 6 -0.4887 -3.3257 -6.1720 25 6 0.3650 -2.4507 -5.6504 26 6 0.8044 -1.4490 -6.5115 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1250 1.4442 0.1053 31 1 1.7652 1.9250 -0.9379 32 1 1.5934 1.9858 0.8328 33 1 0.7163 1.1612 3.4890 34 1 3.1300 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2492 36 1 0.9939 0.7578 -2.3564 37 1 0.8703 0.9327 -4.6809 38 1 0.7375 1.2857 -7.0245 39 1 2.5024 1.4991 -6.9251 40 1 2.7164 -0.4416 -8.5688 41 1 1.9767 1.0340 -9.2398 42 1 0.7533 -1.1381 -9.8015 43 1 -0.2512 0.1074 -9.0187 44 1 -0.9246 -4.1611 -5.6441 45 1 0.6967 -2.5130 -4.6246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458643415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:44 Heat of formation + Delta-G solvation = -13.313960 kcal Electronic energy + Delta-G solvation = -25271.689103 eV Core-core repulsion = 21801.062955 eV Total energy + Delta-G solvation = -3470.626148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23519 -38.69732 -36.39796 -35.39122 -33.94822 -33.20349 -30.91581 -29.58756 -28.60966 -25.71662 -25.55648 -24.81330 -23.76888 -23.01741 -21.00798 -20.51104 -18.78933 -18.63981 -17.80972 -17.30823 -15.98522 -15.79840 -15.71463 -14.73766 -14.67130 -14.42471 -14.35317 -13.88584 -13.68919 -13.34469 -13.07978 -12.94256 -12.84300 -12.72935 -12.16652 -12.16005 -11.80797 -11.44092 -11.41830 -11.18722 -11.18410 -10.96008 -10.87335 -10.66661 -10.63319 -10.36211 -10.20624 -9.76341 -9.61125 -9.30034 -9.01707 -8.79225 -8.56683 -8.39230 -8.35031 -8.18495 -6.02020 -4.10254 0.97436 1.59909 1.96552 2.65278 3.20395 3.28617 3.36250 3.41521 3.63769 4.38791 4.41345 4.54813 4.62415 4.79722 4.85111 4.94933 5.18887 5.25310 5.26711 5.33199 5.46813 5.60727 5.62871 5.81175 5.85418 5.98282 6.14638 6.22671 6.37728 6.37975 6.51640 6.52163 6.72509 6.81464 6.83929 6.91718 7.04077 7.11265 7.32333 7.43249 7.56968 7.71479 8.00924 8.13013 8.38861 8.49870 8.89304 9.05512 9.55014 11.00059 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002765 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.833637 B =10125.464149 C =10764.938899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.229 3.771 18 H 0.099 0.901 19 C -0.126 4.126 20 C -0.110 4.110 21 C -0.046 4.046 22 C -0.178 4.178 23 S 0.071 5.929 24 C -0.218 4.218 25 C -0.107 4.107 26 C -0.109 4.109 27 H 0.081 0.919 28 H 0.007 0.993 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.004 0.996 32 H 0.083 0.917 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.394 0.606 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 0.824 -22.513 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C -0.185 4.185 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.475 6.475 16 N -0.401 5.401 17 C 0.121 3.879 18 H 0.117 0.883 19 C -0.164 4.164 20 C -0.150 4.150 21 C -0.086 4.086 22 C -0.296 4.296 23 S 0.336 5.664 24 C -0.353 4.353 25 C -0.136 4.136 26 C -0.123 4.123 27 H 0.100 0.900 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.023 0.977 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.179 0.821 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.657 -0.671 -23.530 23.822 hybrid contribution 0.411 0.600 2.231 2.347 sum -3.246 -0.071 -21.299 21.545 Atomic orbital electron populations 1.21789 0.97862 0.99107 0.99877 1.18356 0.92670 0.92813 0.90602 1.21840 0.99371 0.98469 0.98867 1.20985 1.29742 1.13924 0.89903 0.92401 1.24869 0.95007 0.94749 0.98788 1.69841 1.38991 1.20362 1.23166 0.86590 0.78015 0.80733 0.82743 1.20828 1.21223 1.19816 1.21559 0.97876 0.95358 0.82405 1.45534 1.55497 1.33070 1.04606 1.16086 0.80435 0.83021 0.80682 1.90892 1.43101 1.27495 1.86014 1.45159 1.57377 1.33111 1.04406 1.19535 0.96857 0.90754 0.80778 0.88292 1.21802 1.03144 0.97312 0.94161 1.21514 0.97668 0.99717 0.96074 1.20302 0.98447 0.95466 0.94338 1.24761 1.04122 1.01662 0.99045 1.83982 1.46517 1.24629 1.11251 1.25334 1.06651 1.05956 0.97310 1.20272 0.97258 0.93957 1.02140 1.20091 1.00916 0.98845 0.92430 0.90017 0.97434 0.95434 0.95275 0.97706 0.89821 0.93071 0.92968 0.93005 0.77205 0.77220 0.90984 0.90454 0.91015 0.90557 0.90533 0.90277 0.82071 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.05 37.16 0.30 -2.58 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 4 C -0.51 -13.30 8.00 -34.44 -0.28 -13.58 16 5 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.12 -17.82 -0.09 1.68 16 7 N -0.89 -23.61 9.47 55.43 0.52 -23.08 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.15 3.22 4.50 -4.04 -0.02 3.20 16 13 N -0.73 -12.95 4.91 -65.23 -0.32 -13.27 16 14 C 0.70 12.05 7.43 -86.92 -0.65 11.40 16 15 O -0.60 -12.44 14.65 5.29 0.08 -12.36 16 16 N -0.75 -9.64 4.97 -59.05 -0.29 -9.93 16 17 C 0.23 2.72 2.77 -68.31 -0.19 2.53 16 18 H 0.10 1.37 7.59 -51.93 -0.39 0.97 16 19 C -0.13 -1.03 5.35 -26.70 -0.14 -1.17 16 20 C -0.11 -0.76 5.94 -26.60 -0.16 -0.92 16 21 C -0.05 -0.36 6.26 -27.44 -0.17 -0.53 16 22 C -0.18 -1.94 6.35 -35.23 -0.22 -2.17 16 23 S 0.07 0.77 23.31 -107.50 -2.51 -1.74 16 24 C -0.22 -2.77 11.20 28.89 0.32 -2.44 16 25 C -0.11 -1.56 9.33 -41.06 -0.38 -1.94 16 26 C -0.11 -1.39 5.53 -104.75 -0.58 -1.97 16 27 H 0.08 2.02 6.15 -51.93 -0.32 1.71 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.00 0.08 6.72 -51.93 -0.35 -0.27 16 32 H 0.08 2.07 6.20 -51.93 -0.32 1.75 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.39 6.27 6.17 -40.82 -0.25 6.01 16 37 H 0.39 4.12 8.61 -40.82 -0.35 3.76 16 38 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.15 2.50 5.84 -52.49 -0.31 2.20 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -29.26 362.22 -10.95 -40.22 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.84 Total: 8.80 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.03 Total: -9.84 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.09 Total: -46.28 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.26 -10.95 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458643415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.904 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds