Wall clock time and date at job start Tue Mar 31 2020 14:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46566 * 120.00030 * 2 1 3 5 5 H 1.07997 * 119.99748 * 122.50324 * 4 2 1 6 6 C 1.37871 * 120.00192 * 302.22823 * 4 2 1 7 7 N 1.31517 * 120.00150 * 353.49029 * 6 4 2 8 8 Si 1.86800 * 120.00100 * 173.49569 * 6 4 2 9 9 H 1.48501 * 109.47425 * 94.98534 * 8 6 4 10 10 H 1.48506 * 109.46958 * 214.98758 * 8 6 4 11 11 H 1.48500 * 109.47040 * 334.98144 * 8 6 4 12 12 C 1.52996 * 109.47093 * 239.99780 * 2 1 3 13 13 N 1.46501 * 109.47120 * 60.00456 * 12 2 1 14 14 C 1.34781 * 120.00113 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99622 * 0.02562 * 14 13 12 16 16 N 1.34768 * 119.99906 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99970 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.57958 * 324.72917 * 17 16 14 19 19 C 1.52972 * 109.58232 * 204.31393 * 17 16 14 20 20 C 1.53079 * 109.33629 * 189.05424 * 19 17 16 21 21 C 1.53169 * 108.99386 * 70.51200 * 20 19 17 22 22 C 1.51416 * 108.70040 * 310.36924 * 21 20 19 23 23 S 1.75833 * 125.24210 * 196.27755 * 22 21 20 24 24 C 1.75726 * 91.07530 * 180.02562 * 23 22 21 25 25 C 1.32908 * 109.58945 * 0.02562 * 24 23 22 26 26 C 1.34627 * 124.78485 * 16.31668 * 22 21 20 27 27 H 1.08996 * 109.46989 * 300.00417 * 1 2 3 28 28 H 1.09004 * 109.46815 * 60.00065 * 1 2 3 29 29 H 1.08996 * 109.47474 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46973 * 174.12099 * 3 2 1 31 31 H 1.08998 * 109.47427 * 294.12348 * 3 2 1 32 32 H 1.09006 * 109.47163 * 54.12680 * 3 2 1 33 33 H 0.97001 * 120.00578 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46808 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47484 * 300.00126 * 12 2 1 36 36 H 0.96995 * 119.99786 * 359.97438 * 13 12 2 37 37 H 0.97004 * 120.00238 * 0.02562 * 16 14 13 38 38 H 1.08993 * 109.50488 * 308.97333 * 19 17 16 39 39 H 1.09005 * 109.49872 * 69.08328 * 19 17 16 40 40 H 1.08997 * 109.51481 * 310.67736 * 20 19 17 41 41 H 1.08995 * 109.56897 * 190.38031 * 20 19 17 42 42 H 1.08998 * 109.59860 * 190.60532 * 21 20 19 43 43 H 1.08998 * 109.72751 * 70.21362 * 21 20 19 44 44 H 1.08006 * 125.20524 * 180.02562 * 24 23 22 45 45 H 1.07989 * 122.15231 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6860 -1.5644 1.1320 6 6 1.6616 -0.2668 2.4822 7 7 0.9768 0.8488 2.6084 8 14 2.1324 -1.2503 3.9990 9 1 3.3923 -0.7088 4.5688 10 1 1.0488 -1.1505 5.0096 11 1 2.3301 -2.6736 3.6243 12 6 2.0400 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8778 -0.4908 -3.6695 15 8 2.5768 -1.4795 -3.7810 16 7 1.4282 0.1442 -4.7699 17 6 1.7821 -0.3563 -6.1005 18 1 2.7944 -0.7602 -6.0816 19 6 1.7013 0.7850 -7.1159 20 6 1.8488 0.2170 -8.5297 21 6 0.5869 -0.5761 -8.8826 22 6 0.2827 -1.5336 -7.7497 23 16 -0.7999 -2.9153 -7.8521 24 6 -0.4887 -3.3257 -6.1720 25 6 0.3650 -2.4507 -5.6504 26 6 0.8044 -1.4490 -6.5115 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1250 1.4442 0.1053 31 1 1.7652 1.9250 -0.9379 32 1 1.5934 1.9858 0.8328 33 1 0.7163 1.1612 3.4890 34 1 3.1300 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2492 36 1 0.9939 0.7578 -2.3564 37 1 0.8703 0.9327 -4.6809 38 1 0.7375 1.2857 -7.0245 39 1 2.5024 1.4991 -6.9251 40 1 2.7164 -0.4416 -8.5688 41 1 1.9767 1.0340 -9.2398 42 1 0.7533 -1.1381 -9.8015 43 1 -0.2512 0.1074 -9.0187 44 1 -0.9246 -4.1611 -5.6441 45 1 0.6967 -2.5130 -4.6246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458643415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:43 Heat of formation + Delta-G solvation = -30.209601 kcal Electronic energy + Delta-G solvation = -25272.421753 eV Core-core repulsion = 21801.062955 eV Total energy + Delta-G solvation = -3471.358798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41058 -39.85512 -38.11997 -36.28216 -35.07815 -34.88584 -32.69930 -30.48024 -29.55520 -27.56442 -27.42388 -26.54508 -24.61224 -23.96768 -22.00575 -21.70518 -20.58684 -19.78073 -19.01432 -18.15499 -17.76399 -17.13798 -16.88480 -16.60849 -15.76943 -15.63535 -15.37721 -15.18664 -14.81235 -14.60244 -14.46414 -14.11276 -14.05492 -13.88203 -13.81334 -13.25690 -13.07782 -12.97806 -12.70784 -12.62007 -12.59032 -12.24719 -12.17799 -12.13831 -11.95417 -11.63439 -11.49262 -11.43184 -11.31908 -11.11148 -10.71986 -10.39095 -10.27330 -9.68011 -9.47058 -9.24916 -8.03514 -6.17389 0.04580 0.71831 1.02043 1.41322 1.44681 1.53305 1.58204 1.99977 2.24811 2.46253 3.20529 3.42835 3.71032 3.81769 4.02630 4.16767 4.20953 4.33956 4.42573 4.52321 4.54367 4.57138 4.71861 4.77697 4.91888 4.96064 5.01160 5.05991 5.09011 5.11172 5.14166 5.19961 5.24478 5.37061 5.39315 5.44937 5.51629 5.64338 5.66813 5.68405 5.70966 6.11003 6.14070 6.21929 6.43313 6.86558 7.19571 7.49799 7.67921 8.96219 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002765 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.833637 B =10125.464149 C =10764.938899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.116 4.116 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.170 3.830 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.635 6.635 16 N -0.726 5.726 17 C 0.227 3.773 18 H 0.073 0.927 19 C -0.118 4.118 20 C -0.107 4.107 21 C -0.048 4.048 22 C -0.168 4.168 23 S 0.113 5.887 24 C -0.234 4.234 25 C -0.131 4.131 26 C -0.136 4.136 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.404 0.596 37 H 0.410 0.590 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.169 0.831 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 2.188 -25.182 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.045 3.955 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.517 6.517 16 N -0.381 5.381 17 C 0.119 3.881 18 H 0.091 0.909 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.087 4.087 22 C -0.286 4.286 23 S 0.378 5.622 24 C -0.369 4.369 25 C -0.162 4.162 26 C -0.149 4.149 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.241 0.759 37 H 0.246 0.754 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.186 0.814 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.590 0.735 -26.234 26.643 hybrid contribution 0.666 0.122 2.969 3.045 sum -3.925 0.856 -23.265 23.609 Atomic orbital electron populations 1.21626 0.97176 0.98533 1.00216 1.18341 0.93128 0.93091 0.90199 1.21667 0.98260 0.97845 0.99654 1.21274 1.30029 1.14022 0.91659 0.93827 1.25431 0.95158 0.95549 1.00846 1.69937 1.39236 1.20887 1.23595 0.85781 0.77828 0.79351 0.80071 1.20531 1.20687 1.20120 1.21065 0.96600 0.94500 0.83293 1.45216 1.55810 1.33265 1.03931 1.16186 0.80109 0.82642 0.81263 1.90867 1.44909 1.29326 1.86579 1.45003 1.56490 1.32844 1.03780 1.19690 0.95312 0.92249 0.80811 0.90934 1.21808 1.04341 0.95861 0.93612 1.21545 0.96957 1.00408 0.95692 1.20520 0.99479 0.95271 0.93413 1.25271 1.02499 1.01613 0.99201 1.83808 1.45665 1.23997 1.08729 1.25538 1.06326 1.05881 0.99116 1.20192 0.98901 0.95917 1.01161 1.20088 1.02354 0.99288 0.93190 0.92198 0.94406 0.96426 0.96503 0.94486 0.91920 0.93026 0.94751 0.94965 0.75899 0.75389 0.89608 0.89370 0.91807 0.87548 0.88906 0.88295 0.81379 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.05 71.98 0.58 -4.70 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -28.54 8.00 25.60 0.20 -28.34 16 5 H 0.04 2.40 7.75 -2.91 -0.02 2.38 16 6 C 0.03 1.60 5.12 84.65 0.43 2.04 16 7 N -0.90 -48.19 9.47 21.45 0.20 -47.98 16 8 Si 0.94 43.04 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C 0.17 7.44 4.50 86.38 0.39 7.83 16 13 N -0.73 -25.68 4.91 -478.53 -2.35 -28.03 16 14 C 0.70 24.49 7.43 179.06 1.33 25.82 16 15 O -0.63 -27.73 14.65 -3.99 -0.06 -27.79 16 16 N -0.73 -18.29 4.97 -459.01 -2.28 -20.57 16 17 C 0.23 5.23 2.77 44.74 0.12 5.36 16 18 H 0.07 2.06 7.59 -2.39 -0.02 2.04 16 19 C -0.12 -1.58 5.35 30.61 0.16 -1.41 16 20 C -0.11 -1.09 5.94 30.68 0.18 -0.91 16 21 C -0.05 -0.55 6.26 30.13 0.19 -0.36 16 22 C -0.17 -3.29 6.35 25.09 0.16 -3.13 16 23 S 0.11 2.22 23.31 -56.49 -1.32 0.90 16 24 C -0.23 -5.97 11.20 66.65 0.75 -5.22 16 25 C -0.13 -3.96 9.33 21.33 0.20 -3.76 16 26 C -0.14 -3.41 5.53 -19.95 -0.11 -3.52 16 27 H 0.06 2.97 6.15 -2.39 -0.01 2.95 16 28 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 31 H 0.04 1.37 6.72 -2.39 -0.02 1.35 16 32 H 0.06 3.09 6.20 -2.38 -0.01 3.07 16 33 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.40 12.31 6.17 -92.71 -0.57 11.73 16 37 H 0.41 7.76 8.61 -92.71 -0.80 6.96 16 38 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 39 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.11 4.07 5.84 -2.92 -0.02 4.05 16 Total: -1.00 -65.73 362.22 1.01 -64.71 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.36 Total: 26.16 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.15 Total: -12.47 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -4.43 Total: -96.58 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.06 Total: -27.79 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -65.73 1.01 -64.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458643415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.503 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds