Wall clock time and date at job start Tue Mar 31 2020 14:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 C 1.50700 * 109.47056 * 240.00374 * 2 1 3 5 5 H 1.08007 * 120.00088 * 240.00067 * 4 2 1 6 6 C 1.37877 * 120.00402 * 59.99931 * 4 2 1 7 7 N 1.31521 * 119.99579 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00415 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 60.00002 * 8 6 4 10 10 H 1.48501 * 109.47421 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47086 * 300.00011 * 8 6 4 12 12 C 1.53001 * 109.47431 * 120.00229 * 2 1 3 13 13 N 1.46500 * 109.46767 * 300.00033 * 12 2 1 14 14 C 1.34782 * 119.99589 * 179.97438 * 13 12 2 15 15 O 1.21583 * 120.00201 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99490 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99848 * 180.02562 * 16 14 13 18 18 H 1.09010 * 109.69036 * 35.34313 * 17 16 14 19 19 C 1.52971 * 109.58581 * 155.68605 * 17 16 14 20 20 C 1.53150 * 109.29939 * 170.98716 * 19 17 16 21 21 C 1.53303 * 108.83258 * 289.29476 * 20 19 17 22 22 C 1.51407 * 108.63330 * 49.96105 * 21 20 19 23 23 S 1.75829 * 125.24988 * 163.62282 * 22 21 20 24 24 C 1.75730 * 91.08169 * 179.74685 * 23 22 21 25 25 C 1.32912 * 109.57955 * 359.97438 * 24 23 22 26 26 C 1.34637 * 124.78126 * 343.31092 * 22 21 20 27 27 H 1.09002 * 109.46361 * 299.99729 * 1 2 3 28 28 H 1.09002 * 109.46945 * 59.99650 * 1 2 3 29 29 H 1.08995 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47313 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46920 * 300.00242 * 3 2 1 32 32 H 1.09004 * 109.46789 * 60.00123 * 3 2 1 33 33 H 0.96999 * 119.99714 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47372 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46902 * 59.99941 * 12 2 1 36 36 H 0.96998 * 120.00017 * 359.97438 * 13 12 2 37 37 H 0.97000 * 120.00693 * 0.02562 * 16 14 13 38 38 H 1.09001 * 109.50376 * 290.93736 * 19 17 16 39 39 H 1.09004 * 109.50055 * 51.03941 * 19 17 16 40 40 H 1.09001 * 109.55433 * 49.28058 * 20 19 17 41 41 H 1.09003 * 109.55613 * 169.48521 * 20 19 17 42 42 H 1.08999 * 109.73947 * 290.15300 * 21 20 19 43 43 H 1.09006 * 109.52619 * 169.63672 * 21 20 19 44 44 H 1.07990 * 125.20674 * 179.97438 * 24 23 22 45 45 H 1.08008 * 122.14218 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8259 -0.4204 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5761 -1.4800 3.7810 16 7 1.4273 0.1435 4.7699 17 6 1.7813 -0.3570 6.1005 18 1 2.7940 -0.7601 6.0839 19 6 1.7003 0.7843 7.1159 20 6 1.8492 0.2152 8.5300 21 6 0.5831 -0.5746 8.8814 22 6 0.2820 -1.5344 7.7498 23 16 -0.8016 -2.9154 7.8517 24 6 -0.4906 -3.3256 6.1714 25 6 0.3638 -2.4510 5.6502 26 6 0.8037 -1.4497 6.5115 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7087 1.1614 -3.4844 34 1 3.1301 -0.7217 1.2490 35 1 1.6768 -1.7490 1.2491 36 1 0.9944 0.7582 2.3564 37 1 0.8693 0.9320 4.6810 38 1 2.5011 1.4987 6.9251 39 1 0.7363 1.2847 7.0247 40 1 2.7166 -0.4438 8.5686 41 1 1.9794 1.0318 9.2401 42 1 -0.2542 0.1110 9.0118 43 1 0.7468 -1.1348 9.8020 44 1 -0.9269 -4.1604 5.6433 45 1 0.6955 -2.5133 4.6242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458643422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:48 Heat of formation + Delta-G solvation = -13.499475 kcal Electronic energy + Delta-G solvation = -25270.418323 eV Core-core repulsion = 21799.784130 eV Total energy + Delta-G solvation = -3470.634193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23205 -38.69365 -36.39662 -35.38611 -33.94367 -33.20691 -30.91040 -29.58323 -28.60393 -25.70961 -25.55634 -24.81134 -23.76541 -23.01472 -21.00923 -20.50910 -18.78978 -18.63821 -17.80808 -17.30798 -15.98384 -15.79432 -15.71197 -14.74893 -14.66697 -14.42309 -14.35112 -13.88445 -13.68572 -13.34470 -13.07961 -12.93622 -12.84762 -12.73024 -12.16773 -12.15916 -11.80649 -11.44551 -11.37960 -11.18579 -11.17560 -10.95982 -10.85157 -10.71612 -10.62753 -10.36011 -10.19967 -9.76325 -9.61410 -9.29625 -9.01637 -8.78534 -8.56564 -8.40322 -8.34905 -8.18756 -6.01059 -4.11032 0.97510 1.60005 1.96678 2.65446 3.20497 3.30953 3.35100 3.39417 3.63902 4.38668 4.41372 4.54852 4.62561 4.79915 4.85141 4.94869 5.18856 5.25685 5.26942 5.33155 5.46704 5.60672 5.63015 5.81152 5.85352 5.98286 6.14711 6.22881 6.37842 6.38140 6.51696 6.52284 6.72614 6.81641 6.84352 6.92373 7.04567 7.11363 7.32327 7.43445 7.57355 7.70878 8.02629 8.13848 8.39545 8.49964 8.88715 9.05627 9.54684 11.00330 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.002753 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.201778 B =10168.308628 C =10777.140471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.229 3.771 18 H 0.099 0.901 19 C -0.126 4.126 20 C -0.110 4.110 21 C -0.046 4.046 22 C -0.178 4.178 23 S 0.071 5.929 24 C -0.218 4.218 25 C -0.107 4.107 26 C -0.109 4.109 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.084 0.916 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.393 0.607 37 H 0.394 0.606 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.162 0.838 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 0.895 22.443 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.475 6.475 16 N -0.401 5.401 17 C 0.121 3.879 18 H 0.117 0.883 19 C -0.164 4.164 20 C -0.150 4.150 21 C -0.085 4.085 22 C -0.296 4.296 23 S 0.336 5.664 24 C -0.352 4.352 25 C -0.136 4.136 26 C -0.123 4.123 27 H 0.024 0.976 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.179 0.821 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.537 -0.594 23.456 23.729 hybrid contribution 0.493 0.634 -2.214 2.355 sum -3.044 0.040 21.243 21.460 Atomic orbital electron populations 1.21816 0.97806 0.99116 0.99973 1.18349 0.92751 0.92751 0.90538 1.21818 0.98564 0.98377 0.99977 1.20960 1.31497 1.12116 0.89914 0.92473 1.24875 0.94859 0.94925 0.98824 1.69798 1.36649 1.22775 1.23299 0.86635 0.79248 0.79806 0.82182 1.20283 1.21350 1.20267 1.21573 0.97860 0.95359 0.82423 1.45527 1.55540 1.33023 1.04599 1.16088 0.80432 0.83021 0.80683 1.90890 1.43089 1.27512 1.86012 1.45157 1.57375 1.33118 1.04401 1.19530 0.96855 0.90758 0.80779 0.88302 1.21822 1.03137 0.97312 0.94175 1.21554 0.97624 0.99740 0.96062 1.20328 0.98418 0.95438 0.94360 1.24763 1.04120 1.01661 0.99059 1.83981 1.46441 1.24706 1.11247 1.25333 1.06646 1.05967 0.97302 1.20273 0.97253 0.93965 1.02140 1.20090 1.00926 0.98845 0.92417 0.97565 0.89682 0.95508 0.95464 0.89683 0.97556 0.92978 0.92966 0.93037 0.77209 0.77216 0.90468 0.90981 0.90996 0.90574 0.90244 0.90535 0.82072 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.22 4.50 -4.04 -0.02 3.20 16 13 N -0.73 -12.98 4.96 -65.22 -0.32 -13.30 16 14 C 0.70 12.07 7.43 -86.91 -0.65 11.42 16 15 O -0.60 -12.45 14.65 5.29 0.08 -12.37 16 16 N -0.75 -9.66 4.97 -59.05 -0.29 -9.95 16 17 C 0.23 2.73 2.76 -68.31 -0.19 2.54 16 18 H 0.10 1.37 7.60 -51.92 -0.39 0.97 16 19 C -0.13 -1.03 5.35 -26.67 -0.14 -1.17 16 20 C -0.11 -0.77 5.95 -26.50 -0.16 -0.92 16 21 C -0.05 -0.36 6.26 -27.38 -0.17 -0.53 16 22 C -0.18 -1.95 6.35 -35.24 -0.22 -2.17 16 23 S 0.07 0.77 23.31 -107.50 -2.51 -1.73 16 24 C -0.22 -2.77 11.20 28.89 0.32 -2.45 16 25 C -0.11 -1.56 9.33 -41.06 -0.38 -1.94 16 26 C -0.11 -1.40 5.53 -104.76 -0.58 -1.98 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.39 6.28 6.18 -40.82 -0.25 6.03 16 37 H 0.39 4.13 8.61 -40.82 -0.35 3.78 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 40 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.15 2.51 5.85 -52.48 -0.31 2.20 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -29.21 362.15 -10.96 -40.17 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.84 Total: 8.99 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.03 Total: -9.90 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.10 Total: -46.36 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.21 -10.96 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458643422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.673 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds