Wall clock time and date at job start Tue Mar 31 2020 14:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 C 1.50700 * 109.47056 * 240.00374 * 2 1 3 5 5 H 1.08007 * 120.00088 * 240.00067 * 4 2 1 6 6 C 1.37877 * 120.00402 * 59.99931 * 4 2 1 7 7 N 1.31521 * 119.99579 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00415 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 60.00002 * 8 6 4 10 10 H 1.48501 * 109.47421 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47086 * 300.00011 * 8 6 4 12 12 C 1.53001 * 109.47431 * 120.00229 * 2 1 3 13 13 N 1.46500 * 109.46767 * 300.00033 * 12 2 1 14 14 C 1.34782 * 119.99589 * 179.97438 * 13 12 2 15 15 O 1.21583 * 120.00201 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99490 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99848 * 180.02562 * 16 14 13 18 18 H 1.09010 * 109.69036 * 35.34313 * 17 16 14 19 19 C 1.52971 * 109.58581 * 155.68605 * 17 16 14 20 20 C 1.53150 * 109.29939 * 170.98716 * 19 17 16 21 21 C 1.53303 * 108.83258 * 289.29476 * 20 19 17 22 22 C 1.51407 * 108.63330 * 49.96105 * 21 20 19 23 23 S 1.75829 * 125.24988 * 163.62282 * 22 21 20 24 24 C 1.75730 * 91.08169 * 179.74685 * 23 22 21 25 25 C 1.32912 * 109.57955 * 359.97438 * 24 23 22 26 26 C 1.34637 * 124.78126 * 343.31092 * 22 21 20 27 27 H 1.09002 * 109.46361 * 299.99729 * 1 2 3 28 28 H 1.09002 * 109.46945 * 59.99650 * 1 2 3 29 29 H 1.08995 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47313 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46920 * 300.00242 * 3 2 1 32 32 H 1.09004 * 109.46789 * 60.00123 * 3 2 1 33 33 H 0.96999 * 119.99714 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47372 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46902 * 59.99941 * 12 2 1 36 36 H 0.96998 * 120.00017 * 359.97438 * 13 12 2 37 37 H 0.97000 * 120.00693 * 0.02562 * 16 14 13 38 38 H 1.09001 * 109.50376 * 290.93736 * 19 17 16 39 39 H 1.09004 * 109.50055 * 51.03941 * 19 17 16 40 40 H 1.09001 * 109.55433 * 49.28058 * 20 19 17 41 41 H 1.09003 * 109.55613 * 169.48521 * 20 19 17 42 42 H 1.08999 * 109.73947 * 290.15300 * 21 20 19 43 43 H 1.09006 * 109.52619 * 169.63672 * 21 20 19 44 44 H 1.07990 * 125.20674 * 179.97438 * 24 23 22 45 45 H 1.08008 * 122.14218 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8259 -0.4204 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5761 -1.4800 3.7810 16 7 1.4273 0.1435 4.7699 17 6 1.7813 -0.3570 6.1005 18 1 2.7940 -0.7601 6.0839 19 6 1.7003 0.7843 7.1159 20 6 1.8492 0.2152 8.5300 21 6 0.5831 -0.5746 8.8814 22 6 0.2820 -1.5344 7.7498 23 16 -0.8016 -2.9154 7.8517 24 6 -0.4906 -3.3256 6.1714 25 6 0.3638 -2.4510 5.6502 26 6 0.8037 -1.4497 6.5115 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7087 1.1614 -3.4844 34 1 3.1301 -0.7217 1.2490 35 1 1.6768 -1.7490 1.2491 36 1 0.9944 0.7582 2.3564 37 1 0.8693 0.9320 4.6810 38 1 2.5011 1.4987 6.9251 39 1 0.7363 1.2847 7.0247 40 1 2.7166 -0.4438 8.5686 41 1 1.9794 1.0318 9.2401 42 1 -0.2542 0.1110 9.0118 43 1 0.7468 -1.1348 9.8020 44 1 -0.9269 -4.1604 5.6433 45 1 0.6955 -2.5133 4.6242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458643422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:47 Heat of formation + Delta-G solvation = -30.362971 kcal Electronic energy + Delta-G solvation = -25271.149579 eV Core-core repulsion = 21799.784130 eV Total energy + Delta-G solvation = -3471.365449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40933 -39.85307 -38.12060 -36.27965 -35.07652 -34.88671 -32.69300 -30.47753 -29.55091 -27.55988 -27.42510 -26.54194 -24.61006 -23.96547 -22.00578 -21.70728 -20.58815 -19.77918 -19.01584 -18.15684 -17.75762 -17.13893 -16.88549 -16.61902 -15.76975 -15.63305 -15.37393 -15.18510 -14.81254 -14.60601 -14.46503 -14.11404 -14.05241 -13.88136 -13.80996 -13.20665 -13.08832 -12.98065 -12.68868 -12.62554 -12.61359 -12.25039 -12.17912 -12.13171 -11.95351 -11.63769 -11.49257 -11.43024 -11.32299 -11.10737 -10.70971 -10.40222 -10.27702 -9.68166 -9.47121 -9.24941 -8.02341 -6.18052 0.04488 0.71765 1.01999 1.43940 1.44772 1.51272 1.58062 1.99927 2.24739 2.46363 3.21185 3.42785 3.71036 3.81716 4.02670 4.16787 4.20650 4.33886 4.42502 4.52332 4.54316 4.57108 4.71713 4.77441 4.91931 4.95869 5.01052 5.06401 5.08792 5.11356 5.13958 5.20444 5.24342 5.37023 5.39474 5.44905 5.51561 5.64209 5.66990 5.67654 5.70884 6.11004 6.15548 6.22417 6.43966 6.86107 7.19518 7.49626 7.67838 8.96472 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.002753 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.201778 B =10168.308628 C =10777.140471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.054 3.946 3 C -0.119 4.119 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.170 3.830 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.635 6.635 16 N -0.726 5.726 17 C 0.227 3.773 18 H 0.073 0.927 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.048 4.048 22 C -0.168 4.168 23 S 0.113 5.887 24 C -0.234 4.234 25 C -0.131 4.131 26 C -0.136 4.136 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.404 0.596 37 H 0.410 0.590 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.169 0.831 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.014 2.296 25.107 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.045 3.955 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.517 6.517 16 N -0.381 5.381 17 C 0.119 3.881 18 H 0.091 0.909 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.087 4.087 22 C -0.286 4.286 23 S 0.378 5.622 24 C -0.369 4.369 25 C -0.162 4.162 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.241 0.759 37 H 0.246 0.754 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.186 0.814 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.397 0.848 26.155 26.536 hybrid contribution 0.719 0.141 -2.949 3.039 sum -3.678 0.989 23.206 23.517 Atomic orbital electron populations 1.21651 0.97210 0.98463 1.00298 1.18335 0.93139 0.93084 0.90154 1.21653 0.97894 0.97763 1.00362 1.21264 1.31821 1.12234 0.91663 0.93809 1.25441 0.95114 0.95593 1.00914 1.69901 1.36907 1.23275 1.23674 0.85831 0.78669 0.78801 0.79598 1.20344 1.20710 1.20209 1.21079 0.96603 0.94481 0.83309 1.45211 1.55852 1.33216 1.03930 1.16189 0.80107 0.82642 0.81264 1.90865 1.44898 1.29339 1.86577 1.45001 1.56488 1.32850 1.03779 1.19686 0.95317 0.92257 0.80809 0.90933 1.21828 1.04333 0.95860 0.93626 1.21585 0.96915 1.00430 0.95677 1.20547 0.99447 0.95233 0.93442 1.25274 1.02490 1.01614 0.99211 1.83806 1.45586 1.24071 1.08715 1.25537 1.06321 1.05890 0.99115 1.20193 0.98900 0.95930 1.01157 1.20087 1.02368 0.99287 0.93177 0.94557 0.91871 0.96606 0.96342 0.91905 0.94411 0.92998 0.94713 0.95030 0.75913 0.75390 0.89385 0.89608 0.91785 0.87563 0.88264 0.88901 0.81385 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 4 C -0.53 -28.54 8.01 25.60 0.21 -28.33 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -48.22 9.35 21.45 0.20 -48.02 16 8 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.17 7.45 4.50 86.38 0.39 7.84 16 13 N -0.73 -25.75 4.96 -478.52 -2.37 -28.12 16 14 C 0.70 24.54 7.43 179.05 1.33 25.87 16 15 O -0.63 -27.77 14.65 -3.98 -0.06 -27.83 16 16 N -0.73 -18.34 4.97 -459.00 -2.28 -20.62 16 17 C 0.23 5.24 2.76 44.74 0.12 5.37 16 18 H 0.07 2.06 7.60 -2.38 -0.02 2.04 16 19 C -0.12 -1.59 5.35 30.63 0.16 -1.42 16 20 C -0.11 -1.09 5.95 30.75 0.18 -0.91 16 21 C -0.05 -0.55 6.26 30.17 0.19 -0.36 16 22 C -0.17 -3.29 6.35 25.08 0.16 -3.13 16 23 S 0.11 2.22 23.31 -56.49 -1.32 0.91 16 24 C -0.23 -5.98 11.20 66.65 0.75 -5.23 16 25 C -0.13 -3.97 9.33 21.33 0.20 -3.77 16 26 C -0.14 -3.41 5.53 -19.95 -0.11 -3.52 16 27 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 28 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 29 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 32 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 33 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.40 12.35 6.18 -92.71 -0.57 11.78 16 37 H 0.41 7.79 8.61 -92.71 -0.80 6.99 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.95 8.10 -2.38 -0.02 0.93 16 40 H 0.06 0.78 8.11 -2.39 -0.02 0.77 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.17 3.82 8.06 -2.92 -0.02 3.80 16 45 H 0.11 4.07 5.85 -2.91 -0.02 4.06 16 Total: -1.00 -65.61 362.15 0.99 -64.62 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.36 Total: 26.66 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.15 Total: -12.62 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.45 Total: -96.76 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.83 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.91 kcal Total: -65.61 0.99 -64.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458643422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.257 kcal (2) G-P(sol) polarization free energy of solvation -65.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds