Wall clock time and date at job start Tue Mar 31 2020 14:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4 10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4 11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 N 1.34775 * 119.99585 * 179.72218 * 14 13 12 17 17 C 1.47424 * 125.65091 * 0.02789 * 16 14 13 18 18 C 1.54908 * 104.83265 * 155.83115 * 17 16 14 19 19 C 1.55155 * 101.58416 * 37.00898 * 18 17 16 20 20 C 1.47025 * 125.64746 * 179.71346 * 16 14 13 21 21 H 1.09008 * 109.88254 * 300.51409 * 20 16 14 22 22 C 1.50696 * 109.88198 * 61.68103 * 20 16 14 23 23 C 1.33392 * 125.20282 * 218.27000 * 22 20 16 24 24 C 1.38428 * 114.91959 * 179.85958 * 23 22 20 25 25 C 1.33388 * 114.91992 * 0.42598 * 24 23 22 26 26 S 1.75881 * 109.59520 * 359.77331 * 25 24 23 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 37 37 H 1.08999 * 110.36505 * 274.66731 * 17 16 14 38 38 H 1.08999 * 110.37019 * 36.87988 * 17 16 14 39 39 H 1.09003 * 111.00205 * 155.07898 * 18 17 16 40 40 H 1.08999 * 111.00758 * 278.89176 * 18 17 16 41 41 H 1.08997 * 110.72377 * 82.86033 * 19 18 17 42 42 H 1.08996 * 110.72272 * 205.95823 * 19 18 17 43 43 H 1.08004 * 122.53875 * 0.02562 * 23 22 20 44 44 H 1.08004 * 122.53472 * 180.19597 * 24 23 22 45 45 H 1.07998 * 125.19854 * 179.74744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5808 -1.4763 3.7812 16 7 1.4372 0.1510 4.7699 17 6 0.5861 1.3548 4.7797 18 6 -0.1324 1.3212 6.1517 19 6 0.9833 0.7633 7.0742 20 6 1.7151 -0.2412 6.1594 21 1 1.3437 -1.2498 6.3413 22 6 3.1980 -0.1829 6.4215 23 6 3.8817 -1.0518 7.1677 24 6 5.2390 -0.7971 7.2632 25 6 5.6559 0.2837 6.6019 26 16 4.2906 1.0455 5.7964 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7090 1.1613 -3.4845 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7584 2.3564 37 1 1.1981 2.2526 4.6939 38 1 -0.1402 1.3126 3.9681 39 1 -0.4305 2.3230 6.4611 40 1 -0.9913 0.6506 6.1266 41 1 1.6549 1.5604 7.3927 42 1 0.5523 0.2561 7.9374 43 1 3.4123 -1.8920 7.6579 44 1 5.9088 -1.4238 7.8333 45 1 6.6759 0.6370 6.5669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459227237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:24 Heat of formation + Delta-G solvation = 5.988501 kcal Electronic energy + Delta-G solvation = -25647.626576 eV Core-core repulsion = 22177.837445 eV Total energy + Delta-G solvation = -3469.789131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19296 -38.11652 -37.13614 -36.14682 -33.29887 -31.67547 -31.13455 -30.34767 -27.49154 -25.69829 -25.61133 -24.97734 -23.92971 -22.68621 -21.32079 -19.72374 -19.37057 -18.80080 -18.08365 -16.81550 -16.34628 -15.79159 -15.38408 -14.88693 -14.76055 -14.56416 -14.00169 -13.62656 -13.34800 -13.22394 -13.00351 -12.81379 -12.78105 -12.47029 -12.38625 -12.15695 -11.86848 -11.52730 -11.40947 -11.34987 -11.16553 -11.08607 -10.84321 -10.66891 -10.62710 -10.35513 -10.18113 -9.70932 -9.60156 -9.28280 -8.77690 -8.75938 -8.54676 -8.38658 -8.34740 -8.10158 -5.99822 -4.09472 1.05740 1.71019 2.11422 2.72589 3.01174 3.30104 3.36913 3.41646 3.64864 4.27408 4.37440 4.42149 4.60681 4.63718 4.91437 5.08261 5.13607 5.27031 5.30816 5.48389 5.49018 5.54315 5.60172 5.65154 5.75678 5.94547 6.11740 6.17847 6.32448 6.36835 6.40275 6.52131 6.55477 6.83551 6.85331 6.96069 7.06217 7.14347 7.35837 7.44391 7.58590 7.72202 8.03696 8.15043 8.40672 8.47627 8.90339 9.08824 9.56124 11.01632 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003361 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.851596 B = 8329.524729 C = 9111.748483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.730 5.730 14 C 0.716 3.284 15 O -0.585 6.585 16 N -0.640 5.640 17 C 0.096 3.904 18 C -0.130 4.130 19 C -0.123 4.123 20 C 0.227 3.773 21 H 0.089 0.911 22 C -0.166 4.166 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.225 4.225 26 S 0.118 5.882 27 H 0.004 0.996 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.004 0.996 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.393 0.607 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 4.048 20.990 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.028 3.972 13 N -0.385 5.385 14 C 0.418 3.582 15 O -0.463 6.463 16 N -0.380 5.380 17 C -0.027 4.027 18 C -0.168 4.168 19 C -0.162 4.162 20 C 0.120 3.880 21 H 0.107 0.893 22 C -0.285 4.285 23 C -0.168 4.168 24 C -0.163 4.163 25 C -0.361 4.361 26 S 0.381 5.619 27 H 0.023 0.977 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.227 4.649 19.854 20.393 hybrid contribution 0.396 -1.388 -0.095 1.446 sum 0.623 3.261 19.759 20.036 Atomic orbital electron populations 1.21808 0.97804 0.99103 0.99897 1.18363 0.92766 0.92793 0.90535 1.21805 0.98582 0.98330 0.99900 1.20985 1.31377 1.12045 0.89855 0.92436 1.24870 0.94895 0.94908 0.98803 1.69804 1.36817 1.22743 1.23155 0.86579 0.79353 0.79380 0.82607 1.20734 1.21290 1.19896 1.21585 0.97887 0.95371 0.82347 1.45522 1.55453 1.33163 1.04322 1.15576 0.80249 0.82543 0.79832 1.90906 1.42589 1.27398 1.85403 1.47748 1.55361 1.30554 1.04306 1.22288 0.93528 0.88327 0.98569 1.22770 0.97730 1.02253 0.94034 1.22740 0.97363 0.98511 0.97541 1.19722 0.87634 0.99459 0.81170 0.89280 1.24857 0.99458 1.00457 1.03714 1.19979 0.93683 1.00595 1.02564 1.20080 0.95621 0.98251 1.02387 1.25603 1.02643 1.02259 1.05550 1.84276 0.98292 1.28288 1.51002 0.97699 0.89644 0.95488 0.95460 0.89665 0.97657 0.93056 0.92990 0.93027 0.77211 0.91572 0.90480 0.89623 0.90262 0.90175 0.89573 0.84650 0.84675 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.50 -13.37 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.71 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -13.81 4.92 -65.22 -0.32 -14.13 16 14 C 0.72 13.47 8.28 -86.92 -0.72 12.76 16 15 O -0.59 -13.24 16.17 5.29 0.09 -13.15 16 16 N -0.64 -9.14 2.83 -170.01 -0.48 -9.62 16 17 C 0.10 1.03 6.58 -2.53 -0.02 1.01 16 18 C -0.13 -0.99 7.08 -24.58 -0.17 -1.17 16 19 C -0.12 -1.02 6.46 -24.90 -0.16 -1.18 16 20 C 0.23 2.78 3.28 -68.11 -0.22 2.56 16 21 H 0.09 1.13 8.13 -51.92 -0.42 0.71 16 22 C -0.17 -2.22 4.55 -36.00 -0.16 -2.38 16 23 C -0.14 -1.73 10.04 -41.21 -0.41 -2.14 16 24 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 25 C -0.22 -2.72 11.23 29.04 0.33 -2.39 16 26 S 0.12 1.58 23.06 -107.50 -2.48 -0.90 16 27 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.39 6.75 4.64 -40.82 -0.19 6.56 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.81 7.29 -51.93 -0.38 0.44 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -30.58 368.34 -10.91 -41.49 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.93 Total: 5.66 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.83 Total: -7.60 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.28 Total: -46.95 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.48 Total: -0.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.58 -10.91 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459227237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.482 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds